Experiment set23IT024 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sucrose 5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -5.0 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5527 -4.9 -4.8 Cold shock protein CspC compare
Pf6N2E2_3630 -4.5 -6.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3783 -4.5 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3839 -4.4 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3932 -4.4 -7.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4826 -4.3 -3.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3752 -4.3 -17.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3782 -4.1 -7.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_71 -4.0 -6.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_77 -4.0 -3.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2258 -3.9 -8.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4564 -3.9 -7.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5014 -3.8 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4825 -3.8 -9.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_1705 -3.8 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3842 -3.8 -6.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4048 -3.8 -3.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3940 -3.8 -8.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1649 -3.8 -7.1 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) conserved
Pf6N2E2_2897 -3.7 -8.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_4279 -3.7 -14.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4596 -3.7 -6.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_302 -3.6 -2.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1089 -3.5 -2.3 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2885 -3.5 -3.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4278 -3.5 -13.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_63 -3.4 -5.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3253 -3.4 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5176 -3.4 -4.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4597 -3.4 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2074 -3.4 -3.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3751 -3.3 -9.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3252 -3.3 -5.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_66 -3.3 -8.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5177 -3.2 -7.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_1650 -3.2 -3.8 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_5150 -3.2 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4047 -3.0 -2.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4054 -3.0 -1.7 Osmotically inducible protein C compare
Pf6N2E2_3170 -2.9 -10.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2073 -2.9 -5.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1648 -2.9 -6.1 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_2487 -2.8 -1.1 FIG00956090: hypothetical protein compare
Pf6N2E2_5676 -2.7 -5.0 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_1646 -2.6 -5.5 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE conserved
Pf6N2E2_2217 -2.6 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_50 -2.5 -9.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5006 -2.5 -1.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_1085 -2.5 -1.7 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_4277 -2.5 -9.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3610 -2.5 -3.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3841 -2.5 -3.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3480 -2.5 -1.7 Transcriptional regulator, ArsR family compare
Pf6N2E2_1647 -2.4 -5.4 Maltose/maltodextrin ABC transporter, permease protein MalF conserved
Pf6N2E2_367 -2.4 -1.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2899 -2.4 -3.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_1645 -2.3 -7.6 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf6N2E2_1116 -2.3 -1.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2088 -2.2 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3248 -2.2 -4.0 Probable transmembrane protein compare
Pf6N2E2_2938 -2.1 -2.9 Outer membrane lipoprotein compare
Pf6N2E2_4276 -2.1 -3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2274 -2.1 -1.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2465 -2.1 -3.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5728 -2.1 -5.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1400 -2.1 -10.8 Sensory box histidine kinase/response regulator compare
Pf6N2E2_6140 -2.1 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4762 -2.1 -2.0 Biotin synthesis protein BioH compare
Pf6N2E2_1381 -2.0 -6.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1758 -2.0 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_5175 -2.0 -6.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2424 -2.0 -3.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_178 -2.0 -0.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3885 -1.9 -4.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2072 -1.9 -3.1 hypothetical protein compare
Pf6N2E2_3984 -1.9 -9.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2753 -1.9 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_58 -1.9 -1.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_1401 -1.9 -8.0 FIG00955631: hypothetical protein compare
Pf6N2E2_4706 -1.8 -1.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_5950 -1.8 -1.3 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3346 -1.8 -6.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_600 -1.8 -1.7 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_1238 -1.8 -1.6 hypothetical protein compare
Pf6N2E2_4009 -1.8 -9.3 GGDEF domain protein compare
Pf6N2E2_6085 -1.8 -1.7 Aha1 domain superfamily compare
Pf6N2E2_3251 -1.8 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1806 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_2549 -1.7 -0.9 hypothetical protein compare
Pf6N2E2_146 -1.7 -1.6 Transcriptional regulator, MarR family compare
Pf6N2E2_2390 -1.7 -2.2 FIG00959101: hypothetical protein compare
Pf6N2E2_2022 -1.7 -3.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1673 -1.7 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_1774 -1.7 -0.9 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_5494 -1.6 -3.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_868 -1.6 -1.0 Transcriptional regulator, HxlR family compare
Pf6N2E2_4353 -1.6 -1.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5666 -1.6 -8.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4146 -1.6 -2.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2017 -1.6 -1.4 DNA-binding protein compare
Pf6N2E2_5667 -1.6 -6.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3204 -1.6 -1.0 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2129 -1.6 -1.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3534 -1.5 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5258 -1.5 -5.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_6164 -1.5 -0.8 tRNA-Val-TAC compare
Pf6N2E2_1490 -1.5 -2.5 hypothetical protein compare
Pf6N2E2_55 -1.5 -1.4 Probable hydrolase compare
Pf6N2E2_5013 -1.5 -2.7 Putative membrane protein compare
Pf6N2E2_3938 -1.5 -8.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4077 -1.5 -2.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5720 -1.5 -5.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3529 -1.4 -1.2 Toxin A compare
Pf6N2E2_1402 -1.4 -3.8 hypothetical protein compare
Pf6N2E2_5496 -1.4 -2.6 FIG00953991: hypothetical protein compare
Pf6N2E2_2999 -1.4 -2.3 probable tail fiber assembly protein compare
Pf6N2E2_4414 -1.4 -0.9 FIG00953808: hypothetical protein compare
Pf6N2E2_1797 -1.4 -1.3 Transcriptional regulator compare
Pf6N2E2_4305 -1.4 -0.8 FIG00959590: hypothetical protein compare
Pf6N2E2_4928 -1.4 -0.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_2003 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4050 -1.4 -2.3 FIG00953718: hypothetical protein compare
Pf6N2E2_2012 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_819 -1.3 -1.5 Response regulator compare
Pf6N2E2_4059 -1.3 -0.5 DNA-binding protein HU-alpha compare
Pf6N2E2_4584 -1.3 -0.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4145 -1.3 -1.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_2387 -1.3 -1.2 Ribonuclease E inhibitor RraA compare
Pf6N2E2_2218 -1.3 -1.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3466 -1.3 -1.6 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_4071 -1.3 -1.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5452 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_2286 -1.3 -2.2 FIG00953287: hypothetical protein compare
Pf6N2E2_2292 -1.3 -2.0 Universal stress protein family COG0589 compare
Pf6N2E2_5207 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_4963 -1.3 -1.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2693 -1.3 -0.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4715 -1.3 -2.6 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_1323 -1.3 -2.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2518 -1.3 -1.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2061 -1.2 -1.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_1545 -1.2 -2.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3504 -1.2 -3.7 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_288 -1.2 -0.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4918 -1.2 -2.0 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2636 -1.2 -1.8 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3537 -1.2 -2.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1441 -1.2 -0.7 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5564 -1.2 -6.8 Membrane protein glpM compare
Pf6N2E2_544 -1.2 -2.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4307 -1.2 -1.6 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_578 -1.2 -2.2 Mobile element protein compare
Pf6N2E2_3569 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_5391 -1.1 -6.5 Predicted ATPase related to phosphate starvation-inducible protein PhoH conserved
Pf6N2E2_6065 -1.1 -1.2 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_3702 -1.1 -1.6 FIG00953907: hypothetical protein compare
Pf6N2E2_1404 -1.1 -1.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1253 -1.1 -2.4 transcriptional regulator compare
Pf6N2E2_2384 -1.1 -2.1 CmpX compare
Pf6N2E2_494 -1.1 -1.8 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_5160 -1.1 -0.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_919 -1.1 -0.7 FIG00954373: hypothetical protein compare
Pf6N2E2_1694 -1.1 -0.4 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5746 -1.1 -1.2 Cobalamin synthase compare
Pf6N2E2_2418 -1.1 -1.7 DNA-binding response regulator, LuxR family compare
Pf6N2E2_1113 -1.1 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_1335 -1.1 -1.9 Phospholipid-binding protein compare
Pf6N2E2_2420 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2985 -1.1 -1.7 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_2646 -1.1 -0.7 FIG00953416: hypothetical protein compare
Pf6N2E2_193 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_4181 -1.1 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_5520 -1.1 -4.4 Sensory box histidine kinase compare
Pf6N2E2_2852 -1.1 -6.4 GGDEF domain/EAL domain protein compare
Pf6N2E2_5723 -1.1 -6.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_1983 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_2546 -1.1 -2.2 Carbon storage regulator compare
Pf6N2E2_4078 -1.1 -7.1 Aldose 1-epimerase conserved
Pf6N2E2_2325 -1.0 -2.3 Recombination protein RecR compare
Pf6N2E2_2588 -1.0 -2.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2706 -1.0 -1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2068 -1.0 -2.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_3198 -1.0 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1805 -1.0 -2.5 Multidrug resistance protein B compare
Pf6N2E2_1782 -1.0 -1.8 STAS domain protein compare
Pf6N2E2_2080 -1.0 -0.5 hypothetical protein compare
Pf6N2E2_1153 -1.0 -1.8 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_2752 -1.0 -1.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3737 -1.0 -0.9 General secretion pathway protein M compare
Pf6N2E2_5499 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_2007 -1.0 -4.8 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_5155 -1.0 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5156 -1.0 -0.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1081 -1.0 -1.0 probable membrane protein YPO3302 compare
Pf6N2E2_1156 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_775 -1.0 -1.9 FIG00955061: hypothetical protein compare
Pf6N2E2_725 -1.0 -2.5 Nitrate/nitrite response regulator protein compare
Pf6N2E2_2300 -1.0 -1.0 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_5761 -1.0 -1.1 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2E2

For carbon source Sucrose across organisms