Experiment set23IT023 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sucrose 10 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5527 -6.1 -4.2 Cold shock protein CspC compare
Pf6N2E2_64 -5.2 -3.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4825 -4.6 -8.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4826 -4.6 -3.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3752 -4.5 -17.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_71 -4.5 -6.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3839 -4.5 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3630 -4.4 -6.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2897 -4.2 -9.4 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_77 -4.2 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4597 -4.0 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3253 -4.0 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -3.9 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4048 -3.8 -4.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3932 -3.8 -9.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3782 -3.8 -7.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4564 -3.7 -8.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3940 -3.7 -10.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -3.6 -6.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3841 -3.5 -2.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2885 -3.5 -4.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1650 -3.5 -4.7 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_4279 -3.4 -15.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3751 -3.3 -10.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3610 -3.3 -5.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_63 -3.2 -5.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2258 -3.2 -10.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_1648 -3.2 -7.5 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_5150 -3.2 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5176 -3.1 -5.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5728 -3.1 -6.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_6164 -3.1 -1.3 tRNA-Val-TAC compare
Pf6N2E2_3252 -3.1 -6.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4278 -3.1 -13.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3783 -3.0 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4047 -3.0 -3.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5177 -3.0 -7.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_302 -3.0 -4.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3248 -2.9 -5.9 Probable transmembrane protein compare
Pf6N2E2_66 -2.9 -7.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_1173 -2.8 -1.9 hypothetical protein compare
Pf6N2E2_4277 -2.8 -11.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2753 -2.8 -1.9 HtrA protease/chaperone protein compare
Pf6N2E2_5006 -2.8 -1.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_451 -2.7 -2.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_2073 -2.7 -6.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1647 -2.6 -4.7 Maltose/maltodextrin ABC transporter, permease protein MalF conserved
Pf6N2E2_1649 -2.6 -7.7 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) conserved
Pf6N2E2_5014 -2.6 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3170 -2.5 -8.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_98 -2.5 -2.2 putative transmembrane protein compare
Pf6N2E2_50 -2.4 -10.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_1981 -2.4 -2.3 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5175 -2.3 -6.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2675 -2.3 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2274 -2.3 -1.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2465 -2.3 -5.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_613 -2.2 -1.3 lipoprotein, putative compare
Pf6N2E2_2707 -2.2 -2.1 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5746 -2.1 -1.4 Cobalamin synthase compare
Pf6N2E2_579 -2.1 -1.7 FIG00962753: hypothetical protein compare
Pf6N2E2_4678 -2.1 -0.9 hypothetical protein compare
Pf6N2E2_1646 -2.1 -6.6 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE conserved
Pf6N2E2_2074 -2.1 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_178 -2.0 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5640 -2.0 -1.0 FIG00955597: hypothetical protein compare
Pf6N2E2_1238 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_2424 -2.0 -3.2 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_4009 -2.0 -10.8 GGDEF domain protein compare
Pf6N2E2_5571 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_1381 -2.0 -6.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2217 -2.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4706 -2.0 -1.2 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2899 -1.9 -4.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_1806 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_1512 -1.9 -2.1 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_2869 -1.9 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_819 -1.9 -1.7 Response regulator compare
Pf6N2E2_2518 -1.8 -3.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_5676 -1.8 -4.8 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3397 -1.8 -2.3 Phage protein compare
Pf6N2E2_1402 -1.8 -5.0 hypothetical protein compare
Pf6N2E2_1705 -1.7 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1774 -1.7 -1.0 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2129 -1.7 -1.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1870 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_5103 -1.7 -0.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3984 -1.7 -8.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3725 -1.7 -1.3 FIG085779: Lipoprotein compare
Pf6N2E2_2218 -1.6 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5579 -1.6 -4.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3938 -1.6 -9.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1450 -1.6 -2.0 FIG00960438: hypothetical protein compare
Pf6N2E2_2502 -1.6 -1.5 O-antigen acetylase compare
Pf6N2E2_4362 -1.6 -1.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3277 -1.6 -1.7 FagA protein compare
Pf6N2E2_4477 -1.6 -2.7 Z-ring-associated protein ZapA compare
Pf6N2E2_5862 -1.6 -1.6 Lipoprotein, putative compare
Pf6N2E2_1400 -1.5 -9.1 Sensory box histidine kinase/response regulator compare
Pf6N2E2_953 -1.5 -1.9 FIG00958851: hypothetical protein compare
Pf6N2E2_968 -1.5 -2.1 FIG00962395: hypothetical protein compare
Pf6N2E2_33 -1.5 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4305 -1.5 -0.9 FIG00959590: hypothetical protein compare
Pf6N2E2_4584 -1.5 -1.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2088 -1.5 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2012 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_4071 -1.5 -1.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2323 -1.5 -1.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_5666 -1.5 -7.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_648 -1.5 -1.5 General secretion pathway protein K compare
Pf6N2E2_4773 -1.4 -0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1652 -1.4 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_58 -1.4 -1.3 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4059 -1.4 -0.6 DNA-binding protein HU-alpha compare
Pf6N2E2_1860 -1.4 -2.4 Ferredoxin, 2Fe-2S compare
Pf6N2E2_3885 -1.4 -3.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2061 -1.4 -2.0 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_3569 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_3325 -1.4 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_288 -1.4 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2072 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_5667 -1.4 -6.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1441 -1.4 -0.8 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1009 -1.3 -1.8 Inositol transport system permease protein compare
Pf6N2E2_1401 -1.3 -6.6 FIG00955631: hypothetical protein compare
Pf6N2E2_5494 -1.3 -3.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2646 -1.3 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_1404 -1.3 -1.4 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3251 -1.3 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5258 -1.3 -5.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_285 -1.3 -2.1 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_3537 -1.3 -2.3 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_5223 -1.3 -3.7 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_6047 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_2381 -1.3 -2.5 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3198 -1.2 -0.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2674 -1.2 -0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_2292 -1.2 -1.9 Universal stress protein family COG0589 compare
Pf6N2E2_2089 -1.2 -2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_3661 -1.2 -8.0 hypothetical protein compare
Pf6N2E2_1128 -1.2 -1.0 Two-component response regulator compare
Pf6N2E2_4546 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_1203 -1.2 -1.4 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_4414 -1.2 -1.1 FIG00953808: hypothetical protein compare
Pf6N2E2_5160 -1.2 -0.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5262 -1.2 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_600 -1.2 -1.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_5564 -1.2 -8.0 Membrane protein glpM compare
Pf6N2E2_2507 -1.2 -3.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_5740 -1.2 -2.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_4276 -1.2 -3.7 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5156 -1.2 -0.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1335 -1.2 -2.0 Phospholipid-binding protein compare
Pf6N2E2_5049 -1.2 -0.7 acetyltransferase, GNAT family compare
Pf6N2E2_4638 -1.2 -0.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1932 -1.1 -2.9 Transcriptional regulator, IclR family compare
Pf6N2E2_491 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_1602 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_3249 -1.1 -5.5 Zn-dependent protease with chaperone function compare
Pf6N2E2_4372 -1.1 -2.1 FIG00460773: hypothetical protein compare
Pf6N2E2_1391 -1.1 -0.7 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2586 -1.1 -1.0 Hpt domain protein compare
Pf6N2E2_4984 -1.1 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2938 -1.1 -2.5 Outer membrane lipoprotein compare
Pf6N2E2_2588 -1.1 -2.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_664 -1.1 -2.5 Acetoin catabolism protein X compare
Pf6N2E2_942 -1.1 -0.7 Mll6465 protein compare
Pf6N2E2_813 -1.1 -1.4 Response regulator compare
Pf6N2E2_1645 -1.1 -5.8 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf6N2E2_367 -1.1 -1.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_945 -1.1 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_647 -1.1 -1.7 General secretion pathway protein G compare
Pf6N2E2_5452 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_2509 -1.1 -0.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5499 -1.1 -0.4 hypothetical protein compare
Pf6N2E2_2682 -1.1 -2.2 Transcriptional regulator, LysR family compare
Pf6N2E2_6100 -1.1 -0.9 tRNA-Val-TAC compare
Pf6N2E2_218 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_51 -1.1 -5.2 hypothetical protein compare
Pf6N2E2_2752 -1.1 -2.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3696 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_2447 -1.1 -4.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4353 -1.0 -1.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2510 -1.0 -0.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4052 -1.0 -0.6 FIG00955481: hypothetical protein compare
Pf6N2E2_5793 -1.0 -2.0 Aspartyl aminopeptidase compare
Pf6N2E2_4007 -1.0 -1.5 FIG00956018: hypothetical protein compare
Pf6N2E2_89 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_552 -1.0 -1.4 Uncharacterized protein ImpF compare
Pf6N2E2_700 -1.0 -3.2 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_3933 -1.0 -4.1 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_5574 -1.0 -3.1 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_1056 -1.0 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_248 -1.0 -3.3 hypothetical protein compare
Pf6N2E2_5723 -1.0 -6.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5261 -1.0 -0.4 FIG00956983: hypothetical protein compare
Pf6N2E2_300 -1.0 -2.9 CrcB protein compare
Pf6N2E2_5243 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_3514 -1.0 -2.0 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2E2

For carbon source Sucrose across organisms