Experiment set23IT021 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04470 -8.8 -14.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS04465 -7.8 -6.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS01210 -7.4 -5.1 tyrosine recombinase XerC compare
BWI76_RS10990 -7.2 -4.3 dihydroorotase compare
BWI76_RS02995 -7.0 -12.9 aspartate carbamoyltransferase compare
BWI76_RS09645 -6.8 -3.0 thioredoxin-disulfide reductase compare
BWI76_RS11965 -6.5 -5.8 orotidine-5'-phosphate decarboxylase compare
BWI76_RS27385 -5.7 -9.7 orotate phosphoribosyltransferase compare
BWI76_RS09910 -5.3 -17.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04510 -4.9 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS23265 -4.9 -5.3 hypothetical protein compare
BWI76_RS15110 -4.7 -13.3 putative excinuclease ABC subunit A compare
BWI76_RS20895 -4.5 -5.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS07070 -4.0 -4.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS27440 -3.7 -6.4 DNA helicase RecG compare
BWI76_RS01615 -3.6 -10.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS09640 -3.5 -2.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08535 -3.4 -3.3 translocation protein TolB compare
BWI76_RS20995 -3.4 -7.3 RNA degradosome polyphosphate kinase compare
BWI76_RS09660 -3.2 -2.2 DNA translocase FtsK compare
BWI76_RS27390 -3.2 -3.4 ribonuclease PH compare
BWI76_RS23240 -3.1 -2.2 exonuclease V subunit gamma compare
BWI76_RS15115 -3.1 -4.7 MFS transporter compare
BWI76_RS26085 -3.0 -2.4 3-dehydroquinate synthase compare
BWI76_RS00180 -3.0 -1.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS26570 -3.0 -4.0 anion permease compare
BWI76_RS20355 -2.9 -3.1 colicin V production protein compare
BWI76_RS15825 -2.9 -4.5 hypothetical protein compare
BWI76_RS02530 -2.9 -2.0 tRNA dimethylallyltransferase compare
BWI76_RS16965 -2.8 -7.2 murein lipoprotein compare
BWI76_RS20435 -2.7 -1.6 chorismate synthase compare
BWI76_RS01610 -2.6 -6.8 phosphoribosylamine--glycine ligase compare
BWI76_RS21450 -2.6 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS01220 -2.6 -8.5 DNA-dependent helicase II compare
BWI76_RS21265 -2.6 -8.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS15225 -2.5 -1.9 DeoR family transcriptional regulator compare
BWI76_RS08530 -2.4 -3.6 protein TolA compare
BWI76_RS18605 -2.4 -2.2 oxidoreductase molybdopterin-binding protein compare
BWI76_RS15840 -2.4 -3.6 prophage protein compare
BWI76_RS17975 -2.4 -5.4 tail-specific protease compare
BWI76_RS17720 -2.4 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS27430 -2.4 -1.6 (p)ppGpp synthetase compare
BWI76_RS09190 -2.3 -3.6 hypothetical protein compare
BWI76_RS05120 -2.3 -12.4 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS07065 -2.3 -6.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20965 -2.2 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS02735 -2.2 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS04305 -2.1 -1.6 molecular chaperone DnaJ compare
BWI76_RS17980 -2.1 -3.7 RNA chaperone ProQ compare
BWI76_RS23230 -2.1 -2.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS01205 -2.1 -4.6 DUF484 family protein compare
BWI76_RS02410 -2.1 -1.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS20350 -2.1 -5.1 amidophosphoribosyltransferase compare
BWI76_RS25335 -2.1 -3.3 stringent starvation protein A compare
BWI76_RS25065 -2.1 -3.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS08525 -2.1 -2.7 colicin transporter compare
BWI76_RS26075 -2.1 -3.9 DNA adenine methylase compare
BWI76_RS25070 -2.0 -2.3 hypothetical protein compare
BWI76_RS15835 -2.0 -1.7 hypothetical protein compare
BWI76_RS00600 -2.0 -8.3 LacI family transcriptional regulator compare
BWI76_RS21505 -1.9 -1.9 hypothetical protein compare
BWI76_RS04645 -1.9 -5.0 3-dehydroquinase compare
BWI76_RS26620 -1.9 -1.6 Fe-S biogenesis protein NfuA compare
BWI76_RS08210 -1.9 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS00400 -1.9 -1.7 glutamine synthetase compare
BWI76_RS20650 -1.8 -2.1 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS21140 -1.8 -2.5 molecular chaperone HscA compare
BWI76_RS26775 -1.8 -3.3 endo-1,4-D-glucanase compare
BWI76_RS06535 -1.8 -6.3 endopeptidase La compare
BWI76_RS24900 -1.7 -2.2 DeoR family transcriptional regulator compare
BWI76_RS19840 -1.7 -1.8 hypothetical protein compare
BWI76_RS20155 -1.7 -2.5 NADH-quinone oxidoreductase subunit I compare
BWI76_RS23885 -1.7 -1.6 2-octaprenylphenol hydroxylase compare
BWI76_RS13595 -1.7 -3.1 transcriptional regulator compare
BWI76_RS15850 -1.7 -0.7 DUF1317 domain-containing protein compare
BWI76_RS01200 -1.6 -1.9 diaminopimelate epimerase compare
BWI76_RS27310 -1.6 -7.0 glycosyltransferase compare
BWI76_RS16805 -1.6 -2.2 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS11515 -1.6 -1.1 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS05015 -1.6 -3.0 transcriptional regulator compare
BWI76_RS21350 -1.6 -3.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS12090 -1.6 -1.0 HNH endonuclease compare
BWI76_RS26395 -1.6 -6.0 cell division protein FtsE compare
BWI76_RS04715 -1.6 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS01350 -1.6 -1.5 NAD(P)H-flavin reductase compare
BWI76_RS22645 -1.5 -4.6 RNA polymerase sigma factor RpoS compare
BWI76_RS00715 -1.5 -3.5 two-component sensor histidine kinase compare
BWI76_RS12985 -1.4 -1.8 transcriptional regulator compare
BWI76_RS09825 -1.4 -8.8 envelope biogenesis factor ElyC compare
BWI76_RS05555 -1.4 -3.8 Crl family RNA polymerase assembly factor compare
BWI76_RS22755 -1.4 -5.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21370 -1.4 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS19770 -1.4 -2.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS01115 -1.4 -3.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS12225 -1.3 -2.6 hypothetical protein compare
BWI76_RS00140 -1.3 -1.4 phosphate transport system regulator PhoU compare
BWI76_RS05840 -1.3 -4.0 glutamate 5-kinase compare
BWI76_RS19845 -1.3 -3.7 phosphatase compare
BWI76_RS23480 -1.3 -6.8 EAL domain-containing protein compare
BWI76_RS09970 -1.3 -2.0 porin OmpA compare
BWI76_RS15990 -1.3 -5.8 serine protease compare
BWI76_RS06525 -1.3 -4.9 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS26665 -1.3 -3.9 DNA-binding response regulator compare
BWI76_RS05450 -1.2 -1.1 ribonuclease HI compare
BWI76_RS21235 -1.2 -1.4 hypothetical protein compare
BWI76_RS04530 -1.2 -1.3 peptidylprolyl isomerase SurA compare
BWI76_RS27435 -1.2 -4.3 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS24925 -1.2 -2.6 DnaA initiator-associating protein DiaA compare
BWI76_RS22690 -1.2 -2.3 adenylyl-sulfate kinase compare
BWI76_RS11610 -1.2 -2.1 glutamate dehydrogenase compare
BWI76_RS12170 -1.2 -2.7 hypothetical protein compare
BWI76_RS15830 -1.1 -1.5 hypothetical protein compare
BWI76_RS13915 -1.1 -4.7 magnesium transport protein MgtC compare
BWI76_RS04145 -1.1 -2.5 purine-nucleoside phosphorylase compare
BWI76_RS00965 -1.1 -1.2 acetolactate synthase 2 small subunit compare
BWI76_RS16525 -1.1 -5.5 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS26455 -1.1 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11205 -1.1 -2.2 transcription-repair coupling factor compare
BWI76_RS00240 -1.1 -2.1 FMN-binding protein MioC compare
BWI76_RS12070 -1.1 -1.1 hypothetical protein compare
BWI76_RS04705 -1.1 -5.8 DNA-binding transcriptional regulator FruR compare
BWI76_RS20170 -1.1 -1.9 NADH-quinone oxidoreductase subunit F compare
BWI76_RS20970 -1.1 -1.5 phosphoribosylglycinamide formyltransferase compare
BWI76_RS24115 -1.1 -3.1 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
BWI76_RS01330 -1.1 -3.5 twin-arginine translocase subunit TatC compare
BWI76_RS11155 -1.1 -2.9 penicillin-binding protein activator LpoB compare
BWI76_RS20160 -1.1 -2.4 NADH-quinone oxidoreductase subunit H compare
BWI76_RS04160 -1.1 -2.8 phosphoserine phosphatase compare
BWI76_RS13315 -1.1 -2.0 50S ribosomal protein L7/L12-serine acetyltransferase compare
BWI76_RS21460 -1.1 -1.4 translation inhibitor protein RaiA compare
BWI76_RS22955 -1.0 -1.9 transcriptional regulator GcvA compare
BWI76_RS10935 -1.0 -4.3 glucan biosynthesis glucosyltransferase H compare
BWI76_RS01775 -1.0 -1.5 hypothetical protein compare
BWI76_RS09655 -1.0 -2.9 leucine-responsive regulatory protein compare
BWI76_RS26460 -1.0 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS08385 -1.0 -1.7 citrate (Si)-synthase compare
BWI76_RS23805 -1.0 -5.6 ssDNA exonuclease RecJ compare
BWI76_RS14155 -1.0 -2.9 transketolase compare
BWI76_RS13400 -1.0 -3.0 GntR family transcriptional regulator compare
BWI76_RS19935 -1.0 -1.7 hypothetical protein compare
BWI76_RS20135 -1.0 -3.3 NADH-quinone oxidoreductase subunit M compare
BWI76_RS11935 -1.0 -2.7 YmiA family putative membrane protein compare
BWI76_RS21690 -1.0 -1.7 hypothetical protein compare
BWI76_RS12305 -1.0 -3.0 hypothetical protein compare
BWI76_RS16090 -1.0 -1.1 two-component system response regulator DcuR compare
BWI76_RS06530 -1.0 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS15195 -1.0 -1.5 DUF4186 domain-containing protein compare
BWI76_RS22850 -1.0 -1.9 tRNA pseudouridine synthase TruC compare
BWI76_RS25000 -0.9 -1.3 malonate decarboxylase acyl carrier protein compare
BWI76_RS21580 -0.9 -0.9 SsrA-binding protein compare
BWI76_RS05790 -0.9 -1.5 phage DNA-binding protein compare
BWI76_RS05075 -0.9 -1.0 type II secretion system protein GspG compare
BWI76_RS20065 -0.9 -3.7 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS15445 -0.9 -2.1 hypothetical protein compare
BWI76_RS26390 -0.9 -3.0 cell division protein FtsX compare
BWI76_RS12255 -0.9 -4.9 hypothetical protein compare
BWI76_RS13590 -0.9 -1.7 hypothetical protein compare
BWI76_RS05950 -0.9 -1.5 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS00760 -0.9 -2.4 cell division protein FtsN compare
BWI76_RS24885 -0.9 -0.8 PTS galactitol transporter subunit IIB compare
BWI76_RS19700 -0.9 -1.6 deoxyribonuclease IV compare
BWI76_RS02445 -0.9 -2.6 fumarate reductase subunit C compare
BWI76_RS10860 -0.9 -3.3 ACR family transporter compare
BWI76_RS18565 -0.9 -2.4 pemk protein compare
BWI76_RS27635 -0.9 -1.7 AraC family transcriptional regulator compare
BWI76_RS19360 -0.9 -2.2 glucose dehydrogenase compare
BWI76_RS09690 -0.9 -1.2 dimethyl sulfoxide reductase compare
BWI76_RS18455 -0.9 -1.1 tRNA-Ser compare
BWI76_RS19575 -0.9 -1.7 maleylacetoacetate isomerase compare
BWI76_RS15090 -0.9 -3.2 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS20140 -0.9 -3.8 NADH-quinone oxidoreductase subunit L compare
BWI76_RS16485 -0.8 -0.9 ribonuclease T compare
BWI76_RS13215 -0.8 -1.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS14650 -0.8 -1.3 helix-turn-helix transcriptional regulator compare
BWI76_RS09520 -0.8 -1.1 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS26590 -0.8 -1.7 transcriptional regulator compare
BWI76_RS07160 -0.8 -2.5 MBL fold hydrolase compare
BWI76_RS16645 -0.8 -2.1 DeoR family transcriptional regulator compare
BWI76_RS12330 -0.8 -2.8 hypothetical protein compare
BWI76_RS08395 -0.8 -1.4 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS12345 -0.8 -1.9 nitrite transporter compare
BWI76_RS15290 -0.8 -1.0 transcriptional regulator compare
BWI76_RS23015 -0.8 -1.2 cobalt transporter ATP-binding subunit compare
BWI76_RS08515 -0.8 -1.7 acyl-CoA thioesterase YbgC compare
BWI76_RS00440 -0.8 -1.3 CopG family transcriptional regulator compare
BWI76_RS12245 -0.8 -3.6 hypothetical protein compare
BWI76_RS02745 -0.8 -1.2 hypothetical protein compare
BWI76_RS04955 -0.8 -0.9 hypoxanthine phosphoribosyltransferase compare
BWI76_RS13920 -0.8 -3.0 magnesium-translocating P-type ATPase compare
BWI76_RS09755 -0.8 -1.8 phosphoserine transaminase compare
BWI76_RS24485 -0.8 -1.5 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS16690 -0.8 -3.2 peptide ABC transporter permease compare
BWI76_RS25480 -0.8 -1.9 ribonuclease E/G compare
BWI76_RS22300 -0.8 -1.6 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS12265 -0.8 -2.8 hypothetical protein compare
BWI76_RS06830 -0.8 -1.8 recombination protein RecR compare
BWI76_RS01085 -0.8 -3.0 polysaccharide chain length modulation protein compare
BWI76_RS14505 -0.8 -1.6 salicylate synthase Irp9 compare
BWI76_RS08585 -0.8 -2.7 nicotinamide riboside transporter PnuC compare
BWI76_RS23830 -0.8 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms