Experiment set23IT020 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -10.2 -7.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS02995 -8.0 -11.0 aspartate carbamoyltransferase compare
BWI76_RS04470 -7.3 -8.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS10990 -7.1 -3.8 dihydroorotase compare
BWI76_RS09645 -6.8 -2.6 thioredoxin-disulfide reductase compare
BWI76_RS15110 -5.1 -11.4 putative excinuclease ABC subunit A compare
BWI76_RS04510 -5.0 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS07070 -4.9 -4.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS09910 -4.8 -19.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS01210 -4.6 -3.1 tyrosine recombinase XerC compare
BWI76_RS23265 -4.5 -6.3 hypothetical protein compare
BWI76_RS11965 -4.1 -4.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS27385 -4.0 -7.2 orotate phosphoribosyltransferase compare
BWI76_RS27390 -3.9 -4.9 ribonuclease PH compare
BWI76_RS15115 -3.6 -3.5 MFS transporter compare
BWI76_RS00140 -3.3 -1.7 phosphate transport system regulator PhoU compare
BWI76_RS09660 -3.2 -2.2 DNA translocase FtsK compare
BWI76_RS23240 -3.2 -2.2 exonuclease V subunit gamma compare
BWI76_RS26085 -3.1 -2.3 3-dehydroquinate synthase compare
BWI76_RS01615 -3.0 -8.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00180 -3.0 -1.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS07185 -2.9 -2.8 hypothetical protein compare
BWI76_RS10035 -2.9 -2.1 hypothetical protein compare
BWI76_RS20995 -2.7 -3.7 RNA degradosome polyphosphate kinase compare
BWI76_RS09640 -2.7 -2.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS12090 -2.7 -2.6 HNH endonuclease compare
BWI76_RS01610 -2.7 -7.9 phosphoribosylamine--glycine ligase compare
BWI76_RS01200 -2.7 -2.4 diaminopimelate epimerase compare
BWI76_RS16965 -2.7 -6.9 murein lipoprotein compare
BWI76_RS27440 -2.7 -4.3 DNA helicase RecG compare
BWI76_RS25335 -2.6 -3.8 stringent starvation protein A compare
BWI76_RS20650 -2.6 -1.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20350 -2.6 -3.6 amidophosphoribosyltransferase compare
BWI76_RS08525 -2.5 -2.8 colicin transporter compare
BWI76_RS01220 -2.5 -7.4 DNA-dependent helicase II compare
BWI76_RS23230 -2.5 -1.7 exodeoxyribonuclease V subunit beta compare
BWI76_RS21265 -2.5 -7.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS26620 -2.5 -1.6 Fe-S biogenesis protein NfuA compare
BWI76_RS15225 -2.4 -2.9 DeoR family transcriptional regulator compare
BWI76_RS04530 -2.4 -1.7 peptidylprolyl isomerase SurA compare
BWI76_RS15825 -2.4 -3.8 hypothetical protein compare
BWI76_RS00600 -2.4 -11.9 LacI family transcriptional regulator compare
BWI76_RS09190 -2.4 -4.7 hypothetical protein compare
BWI76_RS02735 -2.3 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS17980 -2.3 -3.9 RNA chaperone ProQ compare
BWI76_RS08520 -2.3 -1.9 colicin transporter TolQ compare
BWI76_RS17975 -2.2 -5.3 tail-specific protease compare
BWI76_RS26570 -2.2 -2.9 anion permease compare
BWI76_RS02410 -2.1 -1.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS15850 -2.1 -0.9 DUF1317 domain-containing protein compare
BWI76_RS20895 -2.1 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS07065 -2.1 -4.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS05120 -2.1 -10.8 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS17300 -2.0 -1.8 tRNA-Tyr compare
BWI76_RS20355 -2.0 -2.0 colicin V production protein compare
BWI76_RS22690 -2.0 -3.8 adenylyl-sulfate kinase compare
BWI76_RS05200 -2.0 -1.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS20965 -2.0 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00400 -2.0 -1.7 glutamine synthetase compare
BWI76_RS19865 -1.9 -1.7 ecotin compare
BWI76_RS26775 -1.9 -4.6 endo-1,4-D-glucanase compare
BWI76_RS21350 -1.9 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS17720 -1.9 -1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS26075 -1.9 -4.0 DNA adenine methylase compare
BWI76_RS15840 -1.9 -2.2 prophage protein compare
BWI76_RS21580 -1.9 -1.8 SsrA-binding protein compare
BWI76_RS07465 -1.8 -1.6 TetR family transcriptional regulator compare
BWI76_RS08500 -1.8 -2.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS25065 -1.7 -2.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS26395 -1.7 -4.3 cell division protein FtsE compare
BWI76_RS25425 -1.7 -1.7 arginine repressor compare
BWI76_RS08385 -1.7 -3.2 citrate (Si)-synthase compare
BWI76_RS08530 -1.7 -1.8 protein TolA compare
BWI76_RS27310 -1.7 -8.2 glycosyltransferase compare
BWI76_RS19935 -1.6 -2.0 hypothetical protein compare
BWI76_RS13595 -1.6 -3.3 transcriptional regulator compare
BWI76_RS01185 -1.6 -1.9 adenylate cyclase compare
BWI76_RS14415 -1.6 -2.3 transcriptional regulator, TetR family protein compare
BWI76_RS19870 -1.6 -2.3 malate:quinone oxidoreductase compare
BWI76_RS20970 -1.5 -1.6 phosphoribosylglycinamide formyltransferase compare
BWI76_RS26455 -1.5 -3.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS12340 -1.5 -2.4 molecular chaperone Tir compare
BWI76_RS23805 -1.5 -6.8 ssDNA exonuclease RecJ compare
BWI76_RS16525 -1.5 -3.5 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS15835 -1.4 -1.0 hypothetical protein compare
BWI76_RS15830 -1.4 -1.8 hypothetical protein compare
BWI76_RS01205 -1.4 -3.3 DUF484 family protein compare
BWI76_RS05835 -1.4 -2.5 gamma-glutamyl-phosphate reductase compare
BWI76_RS04305 -1.4 -1.1 molecular chaperone DnaJ compare
BWI76_RS19845 -1.4 -4.2 phosphatase compare
BWI76_RS23480 -1.3 -6.3 EAL domain-containing protein compare
BWI76_RS08210 -1.3 -2.4 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS09635 -1.3 -0.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS02580 -1.3 -1.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS20160 -1.3 -2.3 NADH-quinone oxidoreductase subunit H compare
BWI76_RS13480 -1.3 -1.3 XRE family transcriptional regulator compare
BWI76_RS04645 -1.3 -3.4 3-dehydroquinase compare
BWI76_RS14625 -1.3 -1.3 protein TolA compare
BWI76_RS10500 -1.3 -2.0 flavoprotein monooxygenase compare
BWI76_RS00345 -1.2 -2.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS06525 -1.2 -4.9 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS17045 -1.2 -1.1 hypothetical protein compare
BWI76_RS05840 -1.2 -3.6 glutamate 5-kinase compare
BWI76_RS22645 -1.2 -3.6 RNA polymerase sigma factor RpoS compare
BWI76_RS17195 -1.2 -1.9 hypothetical protein compare
BWI76_RS21140 -1.2 -1.1 molecular chaperone HscA compare
BWI76_RS20155 -1.2 -2.0 NADH-quinone oxidoreductase subunit I compare
BWI76_RS16935 -1.1 -1.2 shikimate dehydrogenase compare
BWI76_RS01870 -1.1 -2.3 diacylglycerol kinase compare
BWI76_RS11700 -1.1 -1.1 hypothetical protein compare
BWI76_RS13590 -1.1 -2.1 hypothetical protein compare
BWI76_RS03015 -1.1 -1.5 RNase E inhibitor protein compare
BWI76_RS11300 -1.1 -0.9 cupin compare
BWI76_RS17920 -1.1 -2.5 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS06535 -1.1 -3.0 endopeptidase La compare
BWI76_RS03595 -1.1 -1.4 ethanolamine utilization protein EutM compare
BWI76_RS06190 -1.0 -2.0 hypothetical protein compare
BWI76_RS12265 -1.0 -3.1 hypothetical protein compare
BWI76_RS20490 -1.0 -1.4 hypothetical protein compare
BWI76_RS06325 -1.0 -0.9 hypothetical protein compare
BWI76_RS27820 -1.0 -1.5 ilvB operon leader peptide IvbL compare
BWI76_RS12195 -1.0 -2.1 hypothetical protein compare
BWI76_RS19770 -1.0 -0.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS19495 -1.0 -0.9 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS19325 -1.0 -1.6 mandelate racemase compare
BWI76_RS02990 -1.0 -2.5 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS08645 -1.0 -1.4 molybdate ABC transporter substrate-binding protein compare
BWI76_RS27430 -1.0 -0.9 (p)ppGpp synthetase compare
BWI76_RS26665 -1.0 -2.4 DNA-binding response regulator compare
BWI76_RS17665 -1.0 -1.8 proteasome-type protease compare
BWI76_RS24485 -1.0 -1.6 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS12545 -1.0 -2.2 hypothetical protein compare
BWI76_RS25070 -1.0 -1.3 hypothetical protein compare
BWI76_RS20130 -1.0 -4.4 NADH-quinone oxidoreductase subunit N compare
BWI76_RS22755 -1.0 -3.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21450 -1.0 -1.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS22960 -0.9 -1.7 YgdI/YgdR family lipoprotein compare
BWI76_RS01195 -0.9 -1.1 membrane protein compare
BWI76_RS01800 -0.9 -2.8 glucose-6-phosphate isomerase compare
BWI76_RS12225 -0.9 -1.8 hypothetical protein compare
BWI76_RS12895 -0.9 -2.3 hypothetical protein compare
BWI76_RS23920 -0.9 -2.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS06465 -0.9 -1.3 IclR family transcriptional regulator compare
BWI76_RS09825 -0.9 -3.1 envelope biogenesis factor ElyC compare
BWI76_RS05555 -0.9 -1.3 Crl family RNA polymerase assembly factor compare
BWI76_RS16360 -0.9 -0.8 electron transport complex subunit RsxB compare
BWI76_RS00715 -0.9 -1.8 two-component sensor histidine kinase compare
BWI76_RS00025 -0.9 -0.7 hypothetical protein compare
BWI76_RS17155 -0.9 -1.3 hypothetical protein compare
BWI76_RS05975 -0.9 -2.1 ABC transporter ATP-binding protein compare
BWI76_RS11155 -0.9 -2.0 penicillin-binding protein activator LpoB compare
BWI76_RS13820 -0.9 -1.2 hypothetical protein compare
BWI76_RS12275 -0.9 -5.6 hypothetical protein compare
BWI76_RS12070 -0.9 -0.8 hypothetical protein compare
BWI76_RS04705 -0.9 -3.1 DNA-binding transcriptional regulator FruR compare
BWI76_RS27165 -0.9 -2.9 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS24275 -0.9 -2.0 biopolymer transport protein ExbD compare
BWI76_RS20170 -0.9 -1.4 NADH-quinone oxidoreductase subunit F compare
BWI76_RS04955 -0.9 -1.2 hypoxanthine phosphoribosyltransferase compare
BWI76_RS18605 -0.9 -1.0 oxidoreductase molybdopterin-binding protein compare
BWI76_RS15695 -0.8 -2.7 hypothetical protein compare
BWI76_RS22955 -0.8 -2.6 transcriptional regulator GcvA compare
BWI76_RS17570 -0.8 -1.3 iron-sulfur-binding protein compare
BWI76_RS06830 -0.8 -1.8 recombination protein RecR compare
BWI76_RS16515 -0.8 -1.3 LysR family transcriptional regulator compare
BWI76_RS25245 -0.8 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS08515 -0.8 -1.5 acyl-CoA thioesterase YbgC compare
BWI76_RS18565 -0.8 -1.5 pemk protein compare
BWI76_RS27435 -0.8 -2.8 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS01330 -0.8 -1.6 twin-arginine translocase subunit TatC compare
BWI76_RS24100 -0.8 -2.0 YggS family pyridoxal phosphate enzyme compare
BWI76_RS26460 -0.8 -2.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS19470 -0.8 -1.4 DNA-binding response regulator compare
BWI76_RS21095 -0.8 -3.3 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN compare
BWI76_RS12450 -0.8 -2.3 phage shock protein PspA compare
BWI76_RS01775 -0.8 -1.1 hypothetical protein compare
BWI76_RS01580 -0.8 -3.4 hypothetical protein compare
BWI76_RS08330 -0.8 -1.1 hypothetical protein compare
BWI76_RS16035 -0.8 -1.7 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS16955 -0.8 -0.7 hypothetical protein compare
BWI76_RS25060 -0.8 -1.9 lipoprotein NlpI compare
BWI76_RS15990 -0.8 -2.9 serine protease compare
BWI76_RS12240 -0.8 -3.2 terminase small subunit compare
BWI76_RS02740 -0.8 -2.2 putative transcriptional regulator compare
BWI76_RS01165 -0.8 -2.3 protoheme IX biogenesis protein HemY compare
BWI76_RS11200 -0.8 -1.8 transpeptidase compare
BWI76_RS20190 -0.8 -3.5 NADH-quinone oxidoreductase subunit A compare
BWI76_RS27425 -0.8 -1.0 DNA-directed RNA polymerase subunit omega compare
BWI76_RS09625 -0.8 -1.0 hypothetical protein compare
BWI76_RS05880 -0.8 -1.1 AraC-type DNA-binding domain-containing protein compare
BWI76_RS26685 -0.8 -3.4 glutathione-disulfide reductase compare
BWI76_RS19515 -0.8 -1.7 D-lactate dehydrogenase (cytochrome c-553) (EC 1.1.2.5) (from data) compare
BWI76_RS13140 -0.8 -3.3 phenylacetate-CoA ligase compare
BWI76_RS11335 -0.8 -0.7 tautomerase compare
BWI76_RS16220 -0.8 -1.3 hypothetical protein compare
BWI76_RS12170 -0.8 -2.2 hypothetical protein compare
BWI76_RS13175 -0.8 -2.8 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS12860 -0.8 -1.4 hypothetical protein compare
BWI76_RS03045 -0.8 -0.9 hypothetical protein compare
BWI76_RS02220 -0.8 -1.7 carbon-phosphorus lyase subunit PhnH compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms