Experiment set23IT019 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -9.3 -9.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04470 -7.7 -11.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS02995 -7.5 -11.6 aspartate carbamoyltransferase compare
BWI76_RS09645 -6.9 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS23265 -6.5 -6.2 hypothetical protein compare
BWI76_RS10990 -6.1 -6.0 dihydroorotase compare
BWI76_RS01210 -5.0 -4.5 tyrosine recombinase XerC compare
BWI76_RS15110 -4.9 -13.7 putative excinuclease ABC subunit A compare
BWI76_RS09910 -4.6 -14.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS27385 -4.5 -9.2 orotate phosphoribosyltransferase compare
BWI76_RS26085 -4.4 -3.0 3-dehydroquinate synthase compare
BWI76_RS15825 -4.3 -5.0 hypothetical protein compare
BWI76_RS15850 -3.9 -1.8 DUF1317 domain-containing protein compare
BWI76_RS01615 -3.7 -10.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS27430 -3.7 -2.1 (p)ppGpp synthetase compare
BWI76_RS20965 -3.7 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS09660 -3.3 -2.3 DNA translocase FtsK compare
BWI76_RS23240 -3.3 -2.3 exonuclease V subunit gamma compare
BWI76_RS16965 -3.3 -8.1 murein lipoprotein compare
BWI76_RS15115 -3.2 -3.8 MFS transporter compare
BWI76_RS01200 -3.2 -2.2 diaminopimelate epimerase compare
BWI76_RS04510 -3.2 -2.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS11965 -3.2 -3.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20355 -3.1 -4.4 colicin V production protein compare
BWI76_RS01220 -3.0 -6.5 DNA-dependent helicase II compare
BWI76_RS00180 -3.0 -1.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS02530 -3.0 -2.0 tRNA dimethylallyltransferase compare
BWI76_RS07070 -3.0 -4.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS09190 -2.8 -4.3 hypothetical protein compare
BWI76_RS21370 -2.8 -1.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS17980 -2.8 -7.1 RNA chaperone ProQ compare
BWI76_RS20650 -2.7 -1.9 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS21265 -2.6 -10.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20895 -2.6 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS15225 -2.6 -2.5 DeoR family transcriptional regulator compare
BWI76_RS17720 -2.5 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS25335 -2.5 -5.2 stringent starvation protein A compare
BWI76_RS25070 -2.5 -2.5 hypothetical protein compare
BWI76_RS08525 -2.5 -5.3 colicin transporter compare
BWI76_RS27390 -2.4 -3.4 ribonuclease PH compare
BWI76_RS17975 -2.4 -7.4 tail-specific protease compare
BWI76_RS18605 -2.4 -1.8 oxidoreductase molybdopterin-binding protein compare
BWI76_RS23230 -2.3 -2.2 exodeoxyribonuclease V subunit beta compare
BWI76_RS08500 -2.3 -4.0 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS06535 -2.3 -5.1 endopeptidase La compare
BWI76_RS20995 -2.2 -6.6 RNA degradosome polyphosphate kinase compare
BWI76_RS05120 -2.2 -12.9 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS27440 -2.2 -3.8 DNA helicase RecG compare
BWI76_RS00140 -2.2 -1.8 phosphate transport system regulator PhoU compare
BWI76_RS12090 -2.2 -1.8 HNH endonuclease compare
BWI76_RS20350 -2.1 -6.6 amidophosphoribosyltransferase compare
BWI76_RS18165 -2.1 -1.4 NUDIX pyrophosphatase compare
BWI76_RS01610 -2.1 -7.7 phosphoribosylamine--glycine ligase compare
BWI76_RS26395 -2.1 -5.8 cell division protein FtsE compare
BWI76_RS07065 -2.0 -8.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS15830 -2.0 -2.6 hypothetical protein compare
BWI76_RS00600 -2.0 -10.7 LacI family transcriptional regulator compare
BWI76_RS27310 -2.0 -11.0 glycosyltransferase compare
BWI76_RS15840 -1.9 -2.6 prophage protein compare
BWI76_RS05200 -1.9 -2.2 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26775 -1.9 -4.8 endo-1,4-D-glucanase compare
BWI76_RS15835 -1.8 -1.3 hypothetical protein compare
BWI76_RS25065 -1.8 -2.9 polyribonucleotide nucleotidyltransferase compare
BWI76_RS25425 -1.8 -2.6 arginine repressor compare
BWI76_RS25060 -1.7 -2.8 lipoprotein NlpI compare
BWI76_RS26075 -1.7 -4.9 DNA adenine methylase compare
BWI76_RS02735 -1.7 -2.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS08530 -1.7 -2.8 protein TolA compare
BWI76_RS00240 -1.6 -2.3 FMN-binding protein MioC compare
BWI76_RS05015 -1.6 -1.7 transcriptional regulator compare
BWI76_RS04715 -1.6 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS01205 -1.6 -4.1 DUF484 family protein compare
BWI76_RS21350 -1.5 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS15990 -1.5 -3.9 serine protease compare
BWI76_RS23480 -1.5 -7.9 EAL domain-containing protein compare
BWI76_RS04705 -1.5 -8.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS15660 -1.5 -1.0 hypothetical protein compare
BWI76_RS09640 -1.5 -2.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS19845 -1.4 -3.9 phosphatase compare
BWI76_RS01870 -1.4 -3.8 diacylglycerol kinase compare
BWI76_RS08210 -1.4 -2.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS13595 -1.4 -2.9 transcriptional regulator compare
BWI76_RS23885 -1.4 -1.6 2-octaprenylphenol hydroxylase compare
BWI76_RS09635 -1.4 -0.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS06525 -1.4 -3.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS16525 -1.4 -7.0 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS05840 -1.4 -3.2 glutamate 5-kinase compare
BWI76_RS07645 -1.4 -2.3 short-chain dehydrogenase/reductase compare
BWI76_RS20970 -1.3 -1.7 phosphoribosylglycinamide formyltransferase compare
BWI76_RS26405 -1.3 -1.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS04815 -1.3 -2.4 cell division protein ZapD compare
BWI76_RS14065 -1.3 -1.8 hypothetical protein compare
BWI76_RS19325 -1.3 -2.0 mandelate racemase compare
BWI76_RS00715 -1.3 -4.0 two-component sensor histidine kinase compare
BWI76_RS02725 -1.2 -1.2 HxlR family transcriptional regulator compare
BWI76_RS00400 -1.2 -1.3 glutamine synthetase compare
BWI76_RS23805 -1.2 -6.7 ssDNA exonuclease RecJ compare
BWI76_RS09825 -1.2 -8.7 envelope biogenesis factor ElyC compare
BWI76_RS26570 -1.2 -1.4 anion permease compare
BWI76_RS04160 -1.2 -3.8 phosphoserine phosphatase compare
BWI76_RS20435 -1.2 -1.1 chorismate synthase compare
BWI76_RS02410 -1.2 -1.3 EF-P beta-lysylation protein EpmB compare
BWI76_RS27435 -1.2 -3.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS06475 -1.2 -1.6 protoheme IX farnesyltransferase compare
BWI76_RS14625 -1.2 -1.4 protein TolA compare
BWI76_RS26390 -1.2 -2.6 cell division protein FtsX compare
BWI76_RS12390 -1.2 -2.7 antibiotic biosynthesis monooxygenase compare
BWI76_RS18920 -1.2 -3.0 ATP phosphoribosyltransferase compare
BWI76_RS12345 -1.1 -3.6 nitrite transporter compare
BWI76_RS13915 -1.1 -5.7 magnesium transport protein MgtC compare
BWI76_RS07380 -1.1 -2.3 hypothetical protein compare
BWI76_RS26455 -1.1 -4.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS13090 -1.1 -3.1 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS05555 -1.1 -3.0 Crl family RNA polymerase assembly factor compare
BWI76_RS21235 -1.1 -1.3 hypothetical protein compare
BWI76_RS14410 -1.1 -2.3 hypothetical protein compare
BWI76_RS12270 -1.1 -3.1 hypothetical protein compare
BWI76_RS09760 -1.1 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS12330 -1.1 -4.5 hypothetical protein compare
BWI76_RS12145 -1.1 -1.9 hypothetical protein compare
BWI76_RS21140 -1.0 -1.2 molecular chaperone HscA compare
BWI76_RS20130 -1.0 -3.5 NADH-quinone oxidoreductase subunit N compare
BWI76_RS12245 -1.0 -5.6 hypothetical protein compare
BWI76_RS07985 -1.0 -1.1 fluoride ion transporter CrcB compare
BWI76_RS27165 -1.0 -3.3 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS02580 -1.0 -1.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS15235 -1.0 -2.7 hypothetical protein compare
BWI76_RS08495 -1.0 -2.2 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS12265 -1.0 -4.2 hypothetical protein compare
BWI76_RS09195 -1.0 -1.5 N-acetyltransferase compare
BWI76_RS20135 -1.0 -3.1 NADH-quinone oxidoreductase subunit M compare
BWI76_RS22755 -1.0 -3.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS22760 -1.0 -3.0 sulfite reductase subunit beta compare
BWI76_RS11155 -0.9 -1.3 penicillin-binding protein activator LpoB compare
BWI76_RS14450 -0.9 -2.3 hypothetical protein compare
BWI76_RS00345 -0.9 -2.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS09755 -0.9 -2.3 phosphoserine transaminase compare
BWI76_RS20170 -0.9 -3.1 NADH-quinone oxidoreductase subunit F compare
BWI76_RS24585 -0.9 -3.1 glycerol dehydrogenase compare
BWI76_RS12305 -0.9 -3.5 hypothetical protein compare
BWI76_RS19010 -0.9 -1.8 polysaccharide pyruvyl transferase yvff compare
BWI76_RS21660 -0.9 -1.6 antirestriction protein compare
BWI76_RS12255 -0.9 -5.3 hypothetical protein compare
BWI76_RS07465 -0.9 -1.2 TetR family transcriptional regulator compare
BWI76_RS22765 -0.9 -5.3 sulfite reductase subunit alpha compare
BWI76_RS21580 -0.9 -0.8 SsrA-binding protein compare
BWI76_RS12545 -0.9 -1.8 hypothetical protein compare
BWI76_RS25000 -0.9 -1.4 malonate decarboxylase acyl carrier protein compare
BWI76_RS24115 -0.9 -4.0 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
BWI76_RS08520 -0.9 -1.4 colicin transporter TolQ compare
BWI76_RS26460 -0.9 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS22645 -0.9 -4.2 RNA polymerase sigma factor RpoS compare
BWI76_RS26080 -0.9 -2.5 cell division protein DamX compare
BWI76_RS14005 -0.9 -1.2 TetR family transcriptional regulator compare
BWI76_RS09970 -0.9 -1.6 porin OmpA compare
BWI76_RS04645 -0.9 -2.2 3-dehydroquinase compare
BWI76_RS13560 -0.9 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS22955 -0.9 -3.3 transcriptional regulator GcvA compare
BWI76_RS16275 -0.8 -1.7 fumarate hydratase FumA compare
BWI76_RS15210 -0.8 -1.9 LysR family transcriptional regulator compare
BWI76_RS12275 -0.8 -4.5 hypothetical protein compare
BWI76_RS22690 -0.8 -1.4 adenylyl-sulfate kinase compare
BWI76_RS10500 -0.8 -1.1 flavoprotein monooxygenase compare
BWI76_RS05450 -0.8 -0.7 ribonuclease HI compare
BWI76_RS08330 -0.8 -1.4 hypothetical protein compare
BWI76_RS04305 -0.8 -0.9 molecular chaperone DnaJ compare
BWI76_RS09625 -0.8 -1.2 hypothetical protein compare
BWI76_RS12150 -0.8 -3.3 DNA damage-inducible protein I compare
BWI76_RS22805 -0.8 -4.3 GTP diphosphokinase compare
BWI76_RS13920 -0.8 -3.4 magnesium-translocating P-type ATPase compare
BWI76_RS18915 -0.8 -2.3 NAD(P)-dependent oxidoreductase compare
BWI76_RS12385 -0.8 -3.3 DNA polymerase V subunit UmuC compare
BWI76_RS24275 -0.8 -2.1 biopolymer transport protein ExbD compare
BWI76_RS12595 -0.8 -1.7 hypothetical protein compare
BWI76_RS01585 -0.8 -3.3 transcriptional regulator compare
BWI76_RS00760 -0.8 -2.2 cell division protein FtsN compare
BWI76_RS25245 -0.8 -2.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS11205 -0.8 -1.5 transcription-repair coupling factor compare
BWI76_RS18270 -0.8 -1.6 hypothetical protein compare
BWI76_RS12325 -0.8 -5.7 hypothetical protein compare
BWI76_RS20155 -0.8 -1.8 NADH-quinone oxidoreductase subunit I compare
BWI76_RS12085 -0.8 -2.1 regulatory protein CII from bacteriophage origin compare
BWI76_RS13025 -0.8 -2.6 histidine phosphatase family protein compare
BWI76_RS12335 -0.8 -2.8 hypothetical protein compare
BWI76_RS19575 -0.8 -1.7 maleylacetoacetate isomerase compare
BWI76_RS23150 -0.8 -3.1 propanediol utilization phosphotransacylase compare
BWI76_RS23920 -0.8 -2.9 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS27365 -0.8 -2.0 hypothetical protein compare
BWI76_RS04605 -0.8 -1.2 thiamine ABC transporter ATP-binding protein compare
BWI76_RS26665 -0.8 -1.5 DNA-binding response regulator compare
BWI76_RS17665 -0.7 -1.3 proteasome-type protease compare
BWI76_RS23915 -0.7 -1.1 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS19865 -0.7 -1.6 ecotin compare
BWI76_RS03880 -0.7 -2.2 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS21780 -0.7 -2.4 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS20190 -0.7 -3.3 NADH-quinone oxidoreductase subunit A compare
BWI76_RS03920 -0.7 -2.2 N-acetyltransferase compare
BWI76_RS08380 -0.7 -0.8 endonuclease VIII compare
BWI76_RS12485 -0.7 -1.5 TyrR family transcriptional regulator compare
BWI76_RS27505 -0.7 -1.7 septal ring assembly protein ZapB compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms