Experiment set23IT018 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04470 -8.9 -14.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS04465 -8.1 -6.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS02995 -7.7 -12.8 aspartate carbamoyltransferase compare
BWI76_RS10990 -7.3 -4.1 dihydroorotase compare
BWI76_RS01210 -5.7 -3.3 tyrosine recombinase XerC compare
BWI76_RS15110 -5.2 -11.6 putative excinuclease ABC subunit A compare
BWI76_RS04510 -5.1 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS17720 -5.0 -2.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS11965 -5.0 -5.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS09910 -4.9 -17.9 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS09645 -4.6 -3.2 thioredoxin-disulfide reductase compare
BWI76_RS23265 -4.4 -7.5 hypothetical protein compare
BWI76_RS27385 -3.9 -8.0 orotate phosphoribosyltransferase compare
BWI76_RS07185 -3.8 -2.6 hypothetical protein compare
BWI76_RS07070 -3.6 -5.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS21310 -3.5 -2.0 DNA repair protein RecO compare
BWI76_RS15115 -3.5 -4.1 MFS transporter compare
BWI76_RS09660 -3.4 -2.3 DNA translocase FtsK compare
BWI76_RS21075 -3.3 -3.1 membrane protein compare
BWI76_RS23240 -3.3 -2.3 exonuclease V subunit gamma compare
BWI76_RS00400 -3.2 -2.1 glutamine synthetase compare
BWI76_RS01200 -3.2 -2.2 diaminopimelate epimerase compare
BWI76_RS26085 -3.2 -2.4 3-dehydroquinate synthase compare
BWI76_RS01615 -3.2 -11.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04305 -3.1 -1.7 molecular chaperone DnaJ compare
BWI76_RS16485 -3.1 -1.5 ribonuclease T compare
BWI76_RS00180 -3.0 -1.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS02530 -3.0 -2.0 tRNA dimethylallyltransferase compare
BWI76_RS27390 -2.9 -5.6 ribonuclease PH compare
BWI76_RS17980 -2.8 -6.1 RNA chaperone ProQ compare
BWI76_RS01220 -2.8 -11.9 DNA-dependent helicase II compare
BWI76_RS09190 -2.8 -5.0 hypothetical protein compare
BWI76_RS11435 -2.8 -2.4 hypothetical protein compare
BWI76_RS16965 -2.7 -7.7 murein lipoprotein compare
BWI76_RS21265 -2.6 -9.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS12090 -2.6 -3.3 HNH endonuclease compare
BWI76_RS23230 -2.6 -1.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS25600 -2.5 -1.7 tRNA-Thr compare
BWI76_RS25065 -2.5 -4.3 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20895 -2.4 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS15840 -2.4 -3.3 prophage protein compare
BWI76_RS20970 -2.4 -2.1 phosphoribosylglycinamide formyltransferase compare
BWI76_RS08535 -2.3 -2.8 translocation protein TolB compare
BWI76_RS17975 -2.3 -5.2 tail-specific protease compare
BWI76_RS15225 -2.3 -2.5 DeoR family transcriptional regulator compare
BWI76_RS27440 -2.3 -6.8 DNA helicase RecG compare
BWI76_RS16525 -2.3 -7.5 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS25335 -2.3 -3.0 stringent starvation protein A compare
BWI76_RS20650 -2.3 -2.2 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS02735 -2.2 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS02410 -2.2 -1.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS05120 -2.2 -11.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS26395 -2.1 -4.6 cell division protein FtsE compare
BWI76_RS01610 -2.1 -7.0 phosphoribosylamine--glycine ligase compare
BWI76_RS20965 -2.1 -1.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS08525 -2.0 -3.4 colicin transporter compare
BWI76_RS15825 -2.0 -2.4 hypothetical protein compare
BWI76_RS04715 -2.0 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS26075 -2.0 -6.6 DNA adenine methylase compare
BWI76_RS21350 -2.0 -3.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS00600 -1.9 -7.2 LacI family transcriptional regulator compare
BWI76_RS20355 -1.9 -2.1 colicin V production protein compare
BWI76_RS05450 -1.9 -1.5 ribonuclease HI compare
BWI76_RS13595 -1.9 -4.2 transcriptional regulator compare
BWI76_RS08210 -1.8 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS16920 -1.7 -1.7 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS26775 -1.7 -5.0 endo-1,4-D-glucanase compare
BWI76_RS20995 -1.7 -5.0 RNA degradosome polyphosphate kinase compare
BWI76_RS12070 -1.7 -1.3 hypothetical protein compare
BWI76_RS27165 -1.7 -3.8 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS15830 -1.6 -2.0 hypothetical protein compare
BWI76_RS27430 -1.6 -1.8 (p)ppGpp synthetase compare
BWI76_RS08385 -1.6 -2.2 citrate (Si)-synthase compare
BWI76_RS21580 -1.6 -1.2 SsrA-binding protein compare
BWI76_RS05200 -1.6 -2.1 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS15850 -1.6 -0.7 DUF1317 domain-containing protein compare
BWI76_RS11155 -1.6 -3.6 penicillin-binding protein activator LpoB compare
BWI76_RS15835 -1.6 -1.0 hypothetical protein compare
BWI76_RS25920 -1.5 -2.4 peptidylprolyl isomerase compare
BWI76_RS01185 -1.5 -2.0 adenylate cyclase compare
BWI76_RS06535 -1.5 -4.9 endopeptidase La compare
BWI76_RS07065 -1.5 -3.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS26570 -1.5 -2.1 anion permease compare
BWI76_RS27310 -1.5 -5.5 glycosyltransferase compare
BWI76_RS18565 -1.5 -3.2 pemk protein compare
BWI76_RS11205 -1.4 -4.5 transcription-repair coupling factor compare
BWI76_RS18165 -1.4 -1.0 NUDIX pyrophosphatase compare
BWI76_RS20350 -1.4 -5.0 amidophosphoribosyltransferase compare
BWI76_RS26665 -1.4 -2.8 DNA-binding response regulator compare
BWI76_RS01205 -1.4 -3.7 DUF484 family protein compare
BWI76_RS20155 -1.4 -1.9 NADH-quinone oxidoreductase subunit I compare
BWI76_RS26620 -1.4 -1.3 Fe-S biogenesis protein NfuA compare
BWI76_RS20170 -1.4 -3.8 NADH-quinone oxidoreductase subunit F compare
BWI76_RS09640 -1.4 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS20130 -1.4 -4.0 NADH-quinone oxidoreductase subunit N compare
BWI76_RS22755 -1.4 -4.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS10835 -1.3 -1.3 hypothetical protein compare
BWI76_RS23480 -1.3 -6.0 EAL domain-containing protein compare
BWI76_RS05835 -1.3 -2.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS13970 -1.3 -1.9 ABC transporter compare
BWI76_RS01325 -1.3 -1.8 twin-arginine translocase subunit TatB compare
BWI76_RS21165 -1.2 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS12170 -1.2 -1.9 hypothetical protein compare
BWI76_RS13915 -1.2 -6.3 magnesium transport protein MgtC compare
BWI76_RS08520 -1.2 -1.3 colicin transporter TolQ compare
BWI76_RS01350 -1.2 -1.2 NAD(P)H-flavin reductase compare
BWI76_RS06080 -1.2 -2.7 taurine dioxygenase compare
BWI76_RS15990 -1.2 -6.1 serine protease compare
BWI76_RS04160 -1.2 -3.0 phosphoserine phosphatase compare
BWI76_RS20380 -1.2 -0.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS27435 -1.2 -3.2 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS09825 -1.2 -8.5 envelope biogenesis factor ElyC compare
BWI76_RS18550 -1.2 -1.8 tRNA-Asn compare
BWI76_RS12040 -1.2 -1.4 hypothetical protein compare
BWI76_RS05015 -1.2 -3.0 transcriptional regulator compare
BWI76_RS23805 -1.2 -6.3 ssDNA exonuclease RecJ compare
BWI76_RS19845 -1.2 -4.2 phosphatase compare
BWI76_RS08330 -1.2 -1.7 hypothetical protein compare
BWI76_RS24925 -1.1 -1.2 DnaA initiator-associating protein DiaA compare
BWI76_RS02580 -1.1 -1.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS19840 -1.1 -1.3 hypothetical protein compare
BWI76_RS08495 -1.1 -2.7 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS09755 -1.1 -3.1 phosphoserine transaminase compare
BWI76_RS26455 -1.1 -3.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS21235 -1.1 -1.2 hypothetical protein compare
BWI76_RS06830 -1.1 -4.0 recombination protein RecR compare
BWI76_RS25070 -1.1 -1.6 hypothetical protein compare
BWI76_RS12790 -1.1 -1.1 lactate dehydrogenase compare
BWI76_RS26390 -1.1 -2.6 cell division protein FtsX compare
BWI76_RS15660 -1.0 -0.8 hypothetical protein compare
BWI76_RS10935 -1.0 -3.8 glucan biosynthesis glucosyltransferase H compare
BWI76_RS00715 -1.0 -2.9 two-component sensor histidine kinase compare
BWI76_RS24900 -1.0 -1.7 DeoR family transcriptional regulator compare
BWI76_RS12295 -1.0 -3.8 hypothetical protein compare
BWI76_RS05840 -1.0 -2.4 glutamate 5-kinase compare
BWI76_RS07730 -1.0 -1.2 iron-enterobactin transporter membrane protein compare
BWI76_RS25425 -1.0 -1.7 arginine repressor compare
BWI76_RS02990 -1.0 -4.0 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS01775 -1.0 -1.4 hypothetical protein compare
BWI76_RS12265 -1.0 -3.5 hypothetical protein compare
BWI76_RS04530 -1.0 -1.4 peptidylprolyl isomerase SurA compare
BWI76_RS06525 -1.0 -2.0 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09635 -1.0 -0.8 amino acid ABC transporter ATP-binding protein compare
BWI76_RS20145 -1.0 -1.3 NADH-quinone oxidoreductase subunit K compare
BWI76_RS08275 -1.0 -1.4 LexA regulated protein compare
BWI76_RS12305 -1.0 -4.8 hypothetical protein compare
BWI76_RS00240 -1.0 -1.5 FMN-binding protein MioC compare
BWI76_RS05235 -1.0 -0.7 hypothetical protein compare
BWI76_RS13095 -1.0 -1.1 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS14915 -1.0 -1.5 hypothetical protein compare
BWI76_RS24035 -1.0 -3.9 hypothetical protein compare
BWI76_RS12035 -0.9 -3.9 hypothetical protein compare
BWI76_RS01885 -0.9 -1.2 CsbD family protein compare
BWI76_RS12235 -0.9 -2.3 hypothetical protein compare
BWI76_RS03665 -0.9 -1.7 ABC transporter ATP-binding protein compare
BWI76_RS16315 -0.9 -1.0 SirA-like protein compare
BWI76_RS08530 -0.9 -1.5 protein TolA compare
BWI76_RS09450 -0.9 -1.3 30S ribosomal protein S6--L-glutamate ligase compare
BWI76_RS22475 -0.9 -1.8 heme ABC transporter ATP-binding protein compare
BWI76_RS12245 -0.9 -4.8 hypothetical protein compare
BWI76_RS20795 -0.9 -1.1 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS15955 -0.9 -2.1 transcriptional regulator compare
BWI76_RS22765 -0.9 -4.6 sulfite reductase subunit alpha compare
BWI76_RS00140 -0.9 -1.0 phosphate transport system regulator PhoU compare
BWI76_RS19375 -0.9 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS22805 -0.9 -4.5 GTP diphosphokinase compare
BWI76_RS00380 -0.9 -4.8 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS17645 -0.9 -1.6 hypothetical protein compare
BWI76_RS12210 -0.9 -5.5 hypothetical protein compare
BWI76_RS00755 -0.9 -2.5 ATP-dependent protease subunit HslV compare
BWI76_RS12925 -0.9 -1.8 efflux transporter periplasmic adaptor subunit compare
BWI76_RS06530 -0.9 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS08310 -0.9 -1.7 potassium-transporting ATPase subunit C compare
BWI76_RS17390 -0.9 -1.7 DsrE family protein compare
BWI76_RS20135 -0.9 -2.8 NADH-quinone oxidoreductase subunit M compare
BWI76_RS04805 -0.9 -2.8 8-oxo-dGTP diphosphatase compare
BWI76_RS17665 -0.8 -2.2 proteasome-type protease compare
BWI76_RS25060 -0.8 -2.3 lipoprotein NlpI compare
BWI76_RS14675 -0.8 -2.7 fimbrial chaperone YfcS compare
BWI76_RS08925 -0.8 -3.9 DNA-binding protein YbiB compare
BWI76_RS14155 -0.8 -2.6 transketolase compare
BWI76_RS06400 -0.8 -1.8 oxidative-stress-resistance chaperone compare
BWI76_RS19700 -0.8 -1.8 deoxyribonuclease IV compare
BWI76_RS12240 -0.8 -2.4 terminase small subunit compare
BWI76_RS12385 -0.8 -3.3 DNA polymerase V subunit UmuC compare
BWI76_RS26460 -0.8 -3.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS24180 -0.8 -1.5 hypothetical protein compare
BWI76_RS21325 -0.8 -1.1 hypothetical protein compare
BWI76_RS20190 -0.8 -2.9 NADH-quinone oxidoreductase subunit A compare
BWI76_RS24400 -0.8 -3.8 outer membrane channel protein TolC compare
BWI76_RS04605 -0.8 -1.2 thiamine ABC transporter ATP-binding protein compare
BWI76_RS00345 -0.8 -2.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS27635 -0.8 -1.7 AraC family transcriptional regulator compare
BWI76_RS12275 -0.8 -4.3 hypothetical protein compare
BWI76_RS20165 -0.8 -2.2 NADH-quinone oxidoreductase subunit G compare
BWI76_RS04875 -0.8 -3.6 transcriptional regulator PdhR compare
BWI76_RS27875 -0.8 -0.7 membrane protein compare
BWI76_RS16355 -0.8 -1.8 electron transport complex subunit A compare
BWI76_RS26405 -0.7 -1.2 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS12190 -0.7 -2.5 glycoside hydrolase family protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms