Experiment set23IT010 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -10.4 -7.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS02995 -8.2 -13.6 aspartate carbamoyltransferase compare
BWI76_RS04470 -8.1 -8.5 carbamoyl phosphate synthase large subunit compare
BWI76_RS10990 -7.4 -4.1 dihydroorotase compare
BWI76_RS23265 -6.6 -5.9 hypothetical protein compare
BWI76_RS09645 -5.4 -3.0 thioredoxin-disulfide reductase compare
BWI76_RS04510 -5.2 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS09910 -5.1 -16.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS15110 -4.9 -13.8 putative excinuclease ABC subunit A compare
BWI76_RS27385 -4.8 -7.1 orotate phosphoribosyltransferase compare
BWI76_RS26085 -4.5 -3.0 3-dehydroquinate synthase compare
BWI76_RS01210 -4.2 -2.1 tyrosine recombinase XerC compare
BWI76_RS12090 -3.8 -5.5 HNH endonuclease compare
BWI76_RS09640 -3.7 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS15115 -3.7 -3.6 MFS transporter compare
BWI76_RS00140 -3.5 -1.9 phosphate transport system regulator PhoU compare
BWI76_RS09660 -3.5 -2.4 DNA translocase FtsK compare
BWI76_RS17975 -3.4 -8.4 tail-specific protease compare
BWI76_RS11965 -3.2 -4.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS23240 -3.1 -3.0 exonuclease V subunit gamma compare
BWI76_RS20350 -3.0 -5.3 amidophosphoribosyltransferase compare
BWI76_RS27390 -3.0 -4.6 ribonuclease PH compare
BWI76_RS20650 -2.9 -2.0 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS27430 -2.8 -2.1 (p)ppGpp synthetase compare
BWI76_RS20995 -2.8 -8.6 RNA degradosome polyphosphate kinase compare
BWI76_RS01220 -2.7 -8.3 DNA-dependent helicase II compare
BWI76_RS16965 -2.7 -5.4 murein lipoprotein compare
BWI76_RS01615 -2.5 -7.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS27440 -2.5 -4.8 DNA helicase RecG compare
BWI76_RS20155 -2.5 -3.3 NADH-quinone oxidoreductase subunit I compare
BWI76_RS20965 -2.4 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS25065 -2.4 -2.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS07065 -2.4 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS08525 -2.3 -3.0 colicin transporter compare
BWI76_RS20970 -2.3 -2.2 phosphoribosylglycinamide formyltransferase compare
BWI76_RS05120 -2.3 -12.1 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS20895 -2.3 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS25335 -2.3 -3.6 stringent starvation protein A compare
BWI76_RS21265 -2.3 -8.2 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23895 -2.3 -2.1 Xaa-Pro aminopeptidase compare
BWI76_RS26075 -2.2 -5.7 DNA adenine methylase compare
BWI76_RS05015 -2.2 -3.9 transcriptional regulator compare
BWI76_RS23230 -2.2 -2.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS02410 -2.2 -1.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS00600 -2.2 -9.0 LacI family transcriptional regulator compare
BWI76_RS15840 -2.1 -2.7 prophage protein compare
BWI76_RS06535 -2.1 -5.1 endopeptidase La compare
BWI76_RS17980 -2.1 -4.4 RNA chaperone ProQ compare
BWI76_RS09190 -2.1 -5.0 hypothetical protein compare
BWI76_RS26775 -2.1 -4.9 endo-1,4-D-glucanase compare
BWI76_RS08535 -2.1 -2.5 translocation protein TolB compare
BWI76_RS08530 -2.0 -3.3 protein TolA compare
BWI76_RS00180 -2.0 -1.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS05450 -2.0 -1.8 ribonuclease HI compare
BWI76_RS15835 -2.0 -1.4 hypothetical protein compare
BWI76_RS05200 -1.9 -2.2 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26395 -1.9 -4.3 cell division protein FtsE compare
BWI76_RS08210 -1.9 -3.8 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21310 -1.8 -1.7 DNA repair protein RecO compare
BWI76_RS01610 -1.8 -4.0 phosphoribosylamine--glycine ligase compare
BWI76_RS21580 -1.8 -1.3 SsrA-binding protein compare
BWI76_RS19330 -1.8 -1.5 HAD family hydrolase compare
BWI76_RS20355 -1.8 -3.9 colicin V production protein compare
BWI76_RS15225 -1.8 -1.7 DeoR family transcriptional regulator compare
BWI76_RS21350 -1.7 -2.7 anti-RNA polymerase sigma factor SigE compare
BWI76_RS06525 -1.6 -4.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS15830 -1.6 -2.2 hypothetical protein compare
BWI76_RS05075 -1.6 -1.3 type II secretion system protein GspG compare
BWI76_RS08520 -1.6 -1.9 colicin transporter TolQ compare
BWI76_RS27310 -1.5 -6.8 glycosyltransferase compare
BWI76_RS07070 -1.5 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS01205 -1.5 -3.9 DUF484 family protein compare
BWI76_RS19845 -1.5 -6.0 phosphatase compare
BWI76_RS15825 -1.5 -1.2 hypothetical protein compare
BWI76_RS04605 -1.4 -1.9 thiamine ABC transporter ATP-binding protein compare
BWI76_RS02735 -1.4 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00965 -1.4 -1.3 acetolactate synthase 2 small subunit compare
BWI76_RS00400 -1.4 -1.1 glutamine synthetase compare
BWI76_RS04530 -1.4 -1.8 peptidylprolyl isomerase SurA compare
BWI76_RS19870 -1.4 -1.9 malate:quinone oxidoreductase compare
BWI76_RS05840 -1.3 -2.9 glutamate 5-kinase compare
BWI76_RS26390 -1.3 -5.2 cell division protein FtsX compare
BWI76_RS16525 -1.3 -7.0 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS04160 -1.3 -4.5 phosphoserine phosphatase compare
BWI76_RS04305 -1.3 -1.2 molecular chaperone DnaJ compare
BWI76_RS27165 -1.3 -3.4 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS17400 -1.3 -1.5 transporter compare
BWI76_RS27435 -1.3 -4.3 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS09825 -1.3 -8.8 envelope biogenesis factor ElyC compare
BWI76_RS23805 -1.2 -5.4 ssDNA exonuclease RecJ compare
BWI76_RS22755 -1.2 -4.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS22645 -1.2 -6.0 RNA polymerase sigma factor RpoS compare
BWI76_RS26455 -1.2 -2.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS10935 -1.2 -3.8 glucan biosynthesis glucosyltransferase H compare
BWI76_RS19325 -1.2 -1.8 mandelate racemase compare
BWI76_RS05835 -1.2 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS15990 -1.2 -4.2 serine protease compare
BWI76_RS21140 -1.2 -1.6 molecular chaperone HscA compare
BWI76_RS20135 -1.1 -3.8 NADH-quinone oxidoreductase subunit M compare
BWI76_RS06530 -1.1 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS13595 -1.1 -2.6 transcriptional regulator compare
BWI76_RS04715 -1.1 -1.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS08310 -1.1 -2.2 potassium-transporting ATPase subunit C compare
BWI76_RS17720 -1.1 -1.2 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS08500 -1.1 -2.3 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS12280 -1.1 -2.7 hypothetical protein compare
BWI76_RS27735 -1.0 -2.3 hypothetical protein compare
BWI76_RS07465 -1.0 -1.7 TetR family transcriptional regulator compare
BWI76_RS12255 -1.0 -6.4 hypothetical protein compare
BWI76_RS13915 -1.0 -3.9 magnesium transport protein MgtC compare
BWI76_RS03015 -1.0 -1.5 RNase E inhibitor protein compare
BWI76_RS25070 -1.0 -1.5 hypothetical protein compare
BWI76_RS09635 -1.0 -0.8 amino acid ABC transporter ATP-binding protein compare
BWI76_RS00715 -1.0 -3.2 two-component sensor histidine kinase compare
BWI76_RS11155 -1.0 -2.5 penicillin-binding protein activator LpoB compare
BWI76_RS21370 -1.0 -0.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS08040 -1.0 -2.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS12330 -1.0 -2.2 hypothetical protein compare
BWI76_RS11360 -1.0 -3.1 L-asparaginase compare
BWI76_RS12185 -1.0 -2.1 hypothetical protein compare
BWI76_RS26095 -1.0 -0.7 shikimate kinase compare
BWI76_RS09615 -1.0 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS02530 -1.0 -1.1 tRNA dimethylallyltransferase compare
BWI76_RS19840 -1.0 -1.3 hypothetical protein compare
BWI76_RS19770 -0.9 -1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS08385 -0.9 -1.8 citrate (Si)-synthase compare
BWI76_RS16315 -0.9 -0.6 SirA-like protein compare
BWI76_RS12245 -0.9 -4.4 hypothetical protein compare
BWI76_RS25600 -0.9 -1.0 tRNA-Thr compare
BWI76_RS24115 -0.9 -3.4 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
BWI76_RS17920 -0.9 -2.5 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS20145 -0.9 -1.3 NADH-quinone oxidoreductase subunit K compare
BWI76_RS27425 -0.9 -1.3 DNA-directed RNA polymerase subunit omega compare
BWI76_RS25920 -0.9 -1.8 peptidylprolyl isomerase compare
BWI76_RS12305 -0.9 -3.9 hypothetical protein compare
BWI76_RS04895 -0.9 -2.2 hypothetical protein compare
BWI76_RS13755 -0.9 -1.3 hypothetical protein compare
BWI76_RS12270 -0.9 -3.0 hypothetical protein compare
BWI76_RS03915 -0.9 -5.3 MurR/RpiR family transcriptional regulator compare
BWI76_RS13970 -0.9 -1.4 ABC transporter compare
BWI76_RS04705 -0.9 -3.2 DNA-binding transcriptional regulator FruR compare
BWI76_RS12265 -0.9 -3.7 hypothetical protein compare
BWI76_RS01905 -0.8 -2.6 envelope stress response protein PspG compare
BWI76_RS23480 -0.8 -4.4 EAL domain-containing protein compare
BWI76_RS12965 -0.8 -2.7 LysR family transcriptional regulator compare
BWI76_RS26590 -0.8 -2.6 transcriptional regulator compare
BWI76_RS26665 -0.8 -2.7 DNA-binding response regulator compare
BWI76_RS11900 -0.8 -0.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS12170 -0.8 -2.8 hypothetical protein compare
BWI76_RS25960 -0.8 -2.4 NUDIX hydrolase compare
BWI76_RS20140 -0.8 -3.5 NADH-quinone oxidoreductase subunit L compare
BWI76_RS01800 -0.8 -2.4 glucose-6-phosphate isomerase compare
BWI76_RS21345 -0.8 -1.6 sigma-E factor regulatory protein RseB compare
BWI76_RS01870 -0.8 -2.2 diacylglycerol kinase compare
BWI76_RS02745 -0.8 -1.2 hypothetical protein compare
BWI76_RS12195 -0.8 -2.1 hypothetical protein compare
BWI76_RS04645 -0.8 -2.7 3-dehydroquinase compare
BWI76_RS14300 -0.8 -2.3 hypothetical protein compare
BWI76_RS23945 -0.8 -2.2 methylmalonyl-CoA decarboxylase compare
BWI76_RS12665 -0.8 -1.6 hypothetical protein compare
BWI76_RS13920 -0.8 -3.8 magnesium-translocating P-type ATPase compare
BWI76_RS00790 -0.8 -3.4 bifunctional aspartokinase II/homoserine dehydrogenase II compare
BWI76_RS19935 -0.8 -1.5 hypothetical protein compare
BWI76_RS25060 -0.8 -2.4 lipoprotein NlpI compare
BWI76_RS05880 -0.8 -1.7 AraC-type DNA-binding domain-containing protein compare
BWI76_RS04570 -0.8 -4.2 RNA polymerase-associated protein RapA compare
BWI76_RS01350 -0.8 -0.9 NAD(P)H-flavin reductase compare
BWI76_RS15445 -0.8 -1.6 hypothetical protein compare
BWI76_RS12345 -0.8 -2.5 nitrite transporter compare
BWI76_RS26670 -0.8 -4.2 two-component sensor histidine kinase compare
BWI76_RS21675 -0.8 -1.2 hypothetical protein compare
BWI76_RS09625 -0.8 -1.1 hypothetical protein compare
BWI76_RS14435 -0.8 -1.1 glutamine ABC transporter ATP-binding protein compare
BWI76_RS19010 -0.8 -1.8 polysaccharide pyruvyl transferase yvff compare
BWI76_RS20720 -0.8 -1.2 hypothetical protein compare
BWI76_RS05135 -0.8 -2.5 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS13950 -0.8 -2.1 hypothetical protein compare
BWI76_RS14975 -0.8 -1.7 glyoxalase-like domain protein compare
BWI76_RS19310 -0.8 -1.7 ABC transporter permease compare
BWI76_RS08515 -0.8 -1.6 acyl-CoA thioesterase YbgC compare
BWI76_RS12250 -0.7 -4.3 terminase compare
BWI76_RS06830 -0.7 -3.7 recombination protein RecR compare
BWI76_RS06495 -0.7 -3.7 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS12275 -0.7 -4.7 hypothetical protein compare
BWI76_RS10700 -0.7 -1.7 XRE family transcriptional regulator compare
BWI76_RS24400 -0.7 -3.2 outer membrane channel protein TolC compare
BWI76_RS24770 -0.7 -1.6 hypothetical protein compare
BWI76_RS13805 -0.7 -2.0 inorganic diphosphatase compare
BWI76_RS00760 -0.7 -2.9 cell division protein FtsN compare
BWI76_RS26460 -0.7 -3.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS00940 -0.7 -3.7 transcriptional regulator HdfR compare
BWI76_RS09520 -0.7 -1.4 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS20435 -0.7 -0.8 chorismate synthase compare
BWI76_RS23000 -0.7 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BWI76_RS01580 -0.7 -1.9 hypothetical protein compare
BWI76_RS19575 -0.7 -0.9 maleylacetoacetate isomerase compare
BWI76_RS16200 -0.7 -1.4 NAD(P) transhydrogenase subunit beta compare
BWI76_RS12225 -0.7 -1.7 hypothetical protein compare
BWI76_RS18745 -0.7 -1.7 adenosylhomocysteinase compare
BWI76_RS15090 -0.7 -3.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms