Experiment set23IT009 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04470 -9.1 -13.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS11965 -8.2 -5.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS10990 -7.2 -4.1 dihydroorotase compare
BWI76_RS02995 -7.0 -12.5 aspartate carbamoyltransferase compare
BWI76_RS04465 -6.9 -8.7 carbamoyl-phosphate synthase small subunit compare
BWI76_RS09645 -6.9 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS23265 -5.5 -5.7 hypothetical protein compare
BWI76_RS15110 -5.1 -10.4 putative excinuclease ABC subunit A compare
BWI76_RS09910 -4.7 -15.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS01210 -4.6 -3.1 tyrosine recombinase XerC compare
BWI76_RS26085 -4.3 -2.9 3-dehydroquinate synthase compare
BWI76_RS15825 -3.9 -5.0 hypothetical protein compare
BWI76_RS27385 -3.5 -6.8 orotate phosphoribosyltransferase compare
BWI76_RS15115 -3.5 -3.4 MFS transporter compare
BWI76_RS04715 -3.5 -2.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS25335 -3.5 -3.4 stringent starvation protein A compare
BWI76_RS20895 -3.3 -4.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS16965 -3.3 -4.1 murein lipoprotein compare
BWI76_RS20355 -3.3 -3.5 colicin V production protein compare
BWI76_RS09660 -3.2 -2.2 DNA translocase FtsK compare
BWI76_RS23240 -3.2 -2.2 exonuclease V subunit gamma compare
BWI76_RS21070 -3.1 -2.7 outer membrane protein assembly factor BamB compare
BWI76_RS17720 -3.1 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS01220 -3.1 -7.5 DNA-dependent helicase II compare
BWI76_RS27390 -3.1 -3.5 ribonuclease PH compare
BWI76_RS26075 -3.0 -4.7 DNA adenine methylase compare
BWI76_RS07070 -3.0 -3.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS12090 -2.8 -3.0 HNH endonuclease compare
BWI76_RS17975 -2.8 -5.2 tail-specific protease compare
BWI76_RS21580 -2.8 -2.0 SsrA-binding protein compare
BWI76_RS09640 -2.7 -2.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS20435 -2.7 -1.5 chorismate synthase compare
BWI76_RS01615 -2.6 -7.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS20350 -2.6 -4.9 amidophosphoribosyltransferase compare
BWI76_RS08525 -2.5 -4.7 colicin transporter compare
BWI76_RS25065 -2.4 -3.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS00400 -2.4 -1.6 glutamine synthetase compare
BWI76_RS12145 -2.4 -2.4 hypothetical protein compare
BWI76_RS17980 -2.3 -5.0 RNA chaperone ProQ compare
BWI76_RS20995 -2.3 -7.9 RNA degradosome polyphosphate kinase compare
BWI76_RS15830 -2.2 -2.7 hypothetical protein compare
BWI76_RS26570 -2.2 -2.6 anion permease compare
BWI76_RS23230 -2.1 -2.1 exodeoxyribonuclease V subunit beta compare
BWI76_RS21265 -2.1 -8.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04510 -2.1 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS01610 -2.0 -5.6 phosphoribosylamine--glycine ligase compare
BWI76_RS15225 -2.0 -2.3 DeoR family transcriptional regulator compare
BWI76_RS27430 -2.0 -1.8 (p)ppGpp synthetase compare
BWI76_RS26405 -2.0 -1.9 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS01350 -2.0 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS20155 -2.0 -2.6 NADH-quinone oxidoreductase subunit I compare
BWI76_RS02735 -2.0 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS27440 -2.0 -4.3 DNA helicase RecG compare
BWI76_RS05120 -2.0 -12.4 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01200 -1.9 -2.2 diaminopimelate epimerase compare
BWI76_RS00600 -1.9 -9.1 LacI family transcriptional regulator compare
BWI76_RS01205 -1.9 -4.3 DUF484 family protein compare
BWI76_RS00180 -1.9 -1.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS20965 -1.9 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS27310 -1.9 -8.2 glycosyltransferase compare
BWI76_RS15840 -1.9 -2.3 prophage protein compare
BWI76_RS05015 -1.8 -3.0 transcriptional regulator compare
BWI76_RS26775 -1.8 -4.7 endo-1,4-D-glucanase compare
BWI76_RS02530 -1.7 -1.6 tRNA dimethylallyltransferase compare
BWI76_RS21350 -1.7 -2.9 anti-RNA polymerase sigma factor SigE compare
BWI76_RS07065 -1.7 -5.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS26395 -1.7 -5.5 cell division protein FtsE compare
BWI76_RS25070 -1.7 -2.0 hypothetical protein compare
BWI76_RS08530 -1.6 -2.6 protein TolA compare
BWI76_RS08210 -1.6 -2.6 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS11250 -1.6 -2.4 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS09825 -1.6 -5.7 envelope biogenesis factor ElyC compare
BWI76_RS13915 -1.5 -6.5 magnesium transport protein MgtC compare
BWI76_RS15990 -1.5 -5.3 serine protease compare
BWI76_RS12185 -1.5 -2.9 hypothetical protein compare
BWI76_RS20970 -1.5 -1.7 phosphoribosylglycinamide formyltransferase compare
BWI76_RS09760 -1.5 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS06525 -1.5 -3.6 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS22755 -1.4 -4.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS14935 -1.4 -1.3 NIPSNAP family containing protein compare
BWI76_RS15835 -1.4 -0.9 hypothetical protein compare
BWI76_RS09050 -1.4 -3.2 MFS transporter compare
BWI76_RS09635 -1.3 -0.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS27165 -1.3 -2.6 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS09190 -1.3 -2.5 hypothetical protein compare
BWI76_RS08520 -1.3 -1.4 colicin transporter TolQ compare
BWI76_RS25060 -1.3 -2.2 lipoprotein NlpI compare
BWI76_RS19845 -1.3 -3.7 phosphatase compare
BWI76_RS26390 -1.3 -3.6 cell division protein FtsX compare
BWI76_RS04305 -1.3 -1.2 molecular chaperone DnaJ compare
BWI76_RS20650 -1.3 -1.9 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS21075 -1.3 -1.4 membrane protein compare
BWI76_RS11155 -1.3 -3.1 penicillin-binding protein activator LpoB compare
BWI76_RS04955 -1.3 -2.0 hypoxanthine phosphoribosyltransferase compare
BWI76_RS17920 -1.3 -1.9 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS00715 -1.3 -4.0 two-component sensor histidine kinase compare
BWI76_RS27435 -1.3 -3.7 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS09520 -1.3 -2.2 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS13595 -1.2 -2.7 transcriptional regulator compare
BWI76_RS04705 -1.2 -5.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS26440 -1.2 -1.5 hypothetical protein compare
BWI76_RS23915 -1.2 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS23805 -1.2 -6.0 ssDNA exonuclease RecJ compare
BWI76_RS01195 -1.2 -2.1 membrane protein compare
BWI76_RS20135 -1.2 -3.8 NADH-quinone oxidoreductase subunit M compare
BWI76_RS00710 -1.2 -1.7 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS04160 -1.2 -4.2 phosphoserine phosphatase compare
BWI76_RS06535 -1.1 -4.2 endopeptidase La compare
BWI76_RS16525 -1.1 -3.1 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS19330 -1.1 -1.1 HAD family hydrolase compare
BWI76_RS12255 -1.1 -6.6 hypothetical protein compare
BWI76_RS01775 -1.1 -1.5 hypothetical protein compare
BWI76_RS16000 -1.1 -1.2 multidrug transporter subunit MdtI compare
BWI76_RS11700 -1.1 -1.2 hypothetical protein compare
BWI76_RS05840 -1.1 -3.1 glutamate 5-kinase compare
BWI76_RS13955 -1.1 -2.0 hypothetical protein compare
BWI76_RS27820 -1.1 -1.5 ilvB operon leader peptide IvbL compare
BWI76_RS24485 -1.1 -1.8 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS15215 -1.1 -0.9 N-acetyltransferase compare
BWI76_RS26460 -1.1 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26260 -1.1 -2.9 hypothetical protein compare
BWI76_RS20380 -1.0 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS12265 -1.0 -4.9 hypothetical protein compare
BWI76_RS06830 -1.0 -2.7 recombination protein RecR compare
BWI76_RS16645 -1.0 -1.7 DeoR family transcriptional regulator compare
BWI76_RS06175 -1.0 -2.4 DUF188 domain-containing protein compare
BWI76_RS09755 -1.0 -3.3 phosphoserine transaminase compare
BWI76_RS13775 -1.0 -1.7 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS23480 -1.0 -5.4 EAL domain-containing protein compare
BWI76_RS17110 -1.0 -1.3 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS14825 -1.0 -1.9 dienelactone hydrolase family protein compare
BWI76_RS25425 -1.0 -1.2 arginine repressor compare
BWI76_RS02410 -1.0 -1.1 EF-P beta-lysylation protein EpmB compare
BWI76_RS21570 -1.0 -1.6 RnfH family protein compare
BWI76_RS12240 -1.0 -5.4 terminase small subunit compare
BWI76_RS02745 -1.0 -1.4 hypothetical protein compare
BWI76_RS22690 -1.0 -2.3 adenylyl-sulfate kinase compare
BWI76_RS12275 -1.0 -5.6 hypothetical protein compare
BWI76_RS08395 -1.0 -1.5 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS20165 -0.9 -2.4 NADH-quinone oxidoreductase subunit G compare
BWI76_RS20795 -0.9 -1.1 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS04645 -0.9 -2.2 3-dehydroquinase compare
BWI76_RS09960 -0.9 -1.3 Lon protease compare
BWI76_RS13950 -0.9 -2.9 hypothetical protein compare
BWI76_RS20130 -0.9 -3.3 NADH-quinone oxidoreductase subunit N compare
BWI76_RS05835 -0.9 -2.0 gamma-glutamyl-phosphate reductase compare
BWI76_RS26665 -0.9 -1.9 DNA-binding response regulator compare
BWI76_RS19935 -0.9 -1.5 hypothetical protein compare
BWI76_RS19770 -0.9 -1.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS19690 -0.9 -2.0 LysR family transcriptional regulator compare
BWI76_RS15850 -0.9 -0.4 DUF1317 domain-containing protein compare
BWI76_RS15210 -0.9 -2.3 LysR family transcriptional regulator compare
BWI76_RS14055 -0.9 -2.1 LacI family transcriptional regulator compare
BWI76_RS14970 -0.9 -1.3 pyrroline-5-carboxylate reductase compare
BWI76_RS16090 -0.9 -1.5 two-component system response regulator DcuR compare
BWI76_RS12520 -0.9 -2.5 hypothetical protein compare
BWI76_RS03015 -0.8 -2.2 RNase E inhibitor protein compare
BWI76_RS25245 -0.8 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS19580 -0.8 -2.0 FAA-hydrolase compare
BWI76_RS13240 -0.8 -1.2 hypothetical protein compare
BWI76_RS02990 -0.8 -2.6 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS22645 -0.8 -2.4 RNA polymerase sigma factor RpoS compare
BWI76_RS08535 -0.8 -1.1 translocation protein TolB compare
BWI76_RS16910 -0.8 -1.5 2-keto-4-pentenoate hydratase compare
BWI76_RS21475 -0.8 -3.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS22805 -0.8 -3.6 GTP diphosphokinase compare
BWI76_RS09025 -0.8 -1.7 GntR family transcriptional regulator compare
BWI76_RS16915 -0.8 -1.9 alpha/beta hydrolase fold protein compare
BWI76_RS12330 -0.8 -2.0 hypothetical protein compare
BWI76_RS12300 -0.8 -5.5 hypothetical protein compare
BWI76_RS20180 -0.8 -3.0 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS14030 -0.8 -2.7 ABC transporter permease compare
BWI76_RS04060 -0.8 -1.3 hypothetical protein compare
BWI76_RS00240 -0.8 -1.6 FMN-binding protein MioC compare
BWI76_RS06665 -0.8 -1.4 membrane protein compare
BWI76_RS16690 -0.8 -1.6 peptide ABC transporter permease compare
BWI76_RS12250 -0.8 -5.9 terminase compare
BWI76_RS24945 -0.8 -0.9 glutamine amidotransferase compare
BWI76_RS25160 -0.8 -1.4 transcription elongation factor GreA compare
BWI76_RS12305 -0.8 -3.4 hypothetical protein compare
BWI76_RS01870 -0.8 -2.8 diacylglycerol kinase compare
BWI76_RS01330 -0.8 -2.5 twin-arginine translocase subunit TatC compare
BWI76_RS19865 -0.8 -1.4 ecotin compare
BWI76_RS24650 -0.8 -2.5 putative transport system permease component compare
BWI76_RS26620 -0.8 -0.8 Fe-S biogenesis protein NfuA compare
BWI76_RS20925 -0.8 -2.6 peptidase M48 compare
BWI76_RS04175 -0.8 -2.5 energy-dependent translational throttle protein EttA compare
BWI76_RS21000 -0.8 -3.0 exopolyphosphatase compare
BWI76_RS12270 -0.8 -1.7 hypothetical protein compare
BWI76_RS17945 -0.7 -1.2 hypothetical protein compare
BWI76_RS24400 -0.7 -3.5 outer membrane channel protein TolC compare
BWI76_RS10500 -0.7 -1.4 flavoprotein monooxygenase compare
BWI76_RS15605 -0.7 -1.5 hypothetical protein compare
BWI76_RS09970 -0.7 -1.4 porin OmpA compare
BWI76_RS16955 -0.7 -0.7 hypothetical protein compare
BWI76_RS12280 -0.7 -2.7 hypothetical protein compare
BWI76_RS15950 -0.7 -1.0 dethiobiotin synthase compare
BWI76_RS01185 -0.7 -1.4 adenylate cyclase compare
BWI76_RS21565 -0.7 -0.6 outer membrane protein assembly factor BamE compare
BWI76_RS00140 -0.7 -0.8 phosphate transport system regulator PhoU compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms