Experiment set23IT008 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -10.0 -6.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04470 -9.5 -11.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS23265 -7.8 -3.1 hypothetical protein compare
BWI76_RS20355 -7.6 -3.8 colicin V production protein compare
BWI76_RS02995 -7.4 -6.0 aspartate carbamoyltransferase compare
BWI76_RS10990 -7.3 -3.2 dihydroorotase compare
BWI76_RS09645 -7.0 -2.0 thioredoxin-disulfide reductase compare
BWI76_RS27385 -6.7 -7.9 orotate phosphoribosyltransferase compare
BWI76_RS09910 -6.4 -20.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS15110 -5.6 -6.7 putative excinuclease ABC subunit A compare
BWI76_RS11700 -5.3 -1.5 hypothetical protein compare
BWI76_RS17720 -5.1 -1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS17975 -4.9 -5.0 tail-specific protease compare
BWI76_RS04510 -4.9 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS25600 -4.7 -1.3 tRNA-Thr compare
BWI76_RS01350 -4.7 -1.3 NAD(P)H-flavin reductase compare
BWI76_RS26085 -4.1 -2.0 3-dehydroquinate synthase compare
BWI76_RS01615 -4.0 -8.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS17980 -3.9 -2.7 RNA chaperone ProQ compare
BWI76_RS00715 -3.7 -3.1 two-component sensor histidine kinase compare
BWI76_RS09640 -3.6 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS01210 -3.6 -2.7 tyrosine recombinase XerC compare
BWI76_RS16965 -3.5 -5.4 murein lipoprotein compare
BWI76_RS27430 -3.4 -1.4 (p)ppGpp synthetase compare
BWI76_RS09660 -3.4 -2.1 DNA translocase FtsK compare
BWI76_RS15115 -3.3 -4.6 MFS transporter compare
BWI76_RS07065 -3.2 -4.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS09625 -3.2 -1.6 hypothetical protein compare
BWI76_RS00600 -3.2 -7.0 LacI family transcriptional regulator compare
BWI76_RS01610 -3.2 -3.4 phosphoribosylamine--glycine ligase compare
BWI76_RS23240 -3.1 -2.2 exonuclease V subunit gamma compare
BWI76_RS01870 -3.1 -3.2 diacylglycerol kinase compare
BWI76_RS27390 -3.1 -2.8 ribonuclease PH compare
BWI76_RS09760 -3.0 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01220 -3.0 -6.1 DNA-dependent helicase II compare
BWI76_RS20390 -3.0 -2.4 erythronate-4-phosphate dehydrogenase compare
BWI76_RS16360 -2.9 -1.2 electron transport complex subunit RsxB compare
BWI76_RS00400 -2.8 -1.3 glutamine synthetase compare
BWI76_RS20350 -2.8 -2.5 amidophosphoribosyltransferase compare
BWI76_RS04305 -2.8 -1.1 molecular chaperone DnaJ compare
BWI76_RS11965 -2.8 -1.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS13560 -2.8 -1.1 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS01200 -2.8 -1.7 diaminopimelate epimerase compare
BWI76_RS25335 -2.8 -2.4 stringent starvation protein A compare
BWI76_RS08495 -2.8 -4.1 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS21395 -2.7 -2.2 DTW domain-containing protein compare
BWI76_RS21265 -2.7 -7.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04605 -2.7 -1.5 thiamine ABC transporter ATP-binding protein compare
BWI76_RS02735 -2.7 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00180 -2.7 -1.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS08605 -2.7 -2.5 phosphoglyceromutase compare
BWI76_RS02530 -2.7 -1.7 tRNA dimethylallyltransferase compare
BWI76_RS12330 -2.7 -1.8 hypothetical protein compare
BWI76_RS05915 -2.7 -2.6 helix-turn-helix transcriptional regulator compare
BWI76_RS09655 -2.6 -3.2 leucine-responsive regulatory protein compare
BWI76_RS22755 -2.6 -4.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS05200 -2.6 -1.7 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS20490 -2.6 -2.5 hypothetical protein compare
BWI76_RS09190 -2.5 -4.0 hypothetical protein compare
BWI76_RS16485 -2.3 -1.3 ribonuclease T compare
BWI76_RS24100 -2.3 -3.3 YggS family pyridoxal phosphate enzyme compare
BWI76_RS26045 -2.3 -2.4 nitrite reductase small subunit compare
BWI76_RS05120 -2.2 -7.7 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS23885 -2.2 -1.2 2-octaprenylphenol hydroxylase compare
BWI76_RS11235 -2.2 -1.1 hypothetical protein compare
BWI76_RS20650 -2.2 -1.9 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20970 -2.2 -1.4 phosphoribosylglycinamide formyltransferase compare
BWI76_RS27165 -2.2 -3.0 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS01205 -2.2 -2.8 DUF484 family protein compare
BWI76_RS15835 -2.2 -1.5 hypothetical protein compare
BWI76_RS15195 -2.1 -1.7 DUF4186 domain-containing protein compare
BWI76_RS25070 -2.1 -1.4 hypothetical protein compare
BWI76_RS07070 -2.1 -1.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS15990 -2.1 -4.4 serine protease compare
BWI76_RS20995 -2.1 -5.0 RNA degradosome polyphosphate kinase compare
BWI76_RS11580 -2.0 -1.4 L-asparaginase 1 compare
BWI76_RS15830 -2.0 -3.3 hypothetical protein compare
BWI76_RS14410 -2.0 -1.7 hypothetical protein compare
BWI76_RS15980 -2.0 -1.7 lysine transporter LysE compare
BWI76_RS21580 -1.9 -1.2 SsrA-binding protein compare
BWI76_RS17920 -1.9 -2.4 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS05840 -1.9 -3.5 glutamate 5-kinase compare
BWI76_RS02410 -1.9 -1.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS15225 -1.8 -1.6 DeoR family transcriptional regulator compare
BWI76_RS23230 -1.8 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS08395 -1.8 -1.5 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS26775 -1.8 -3.4 endo-1,4-D-glucanase compare
BWI76_RS09825 -1.8 -3.6 envelope biogenesis factor ElyC compare
BWI76_RS26405 -1.8 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS17565 -1.8 -1.6 hypothetical protein compare
BWI76_RS26390 -1.8 -4.6 cell division protein FtsX compare
BWI76_RS02180 -1.7 -1.0 hypothetical protein compare
BWI76_RS12295 -1.7 -3.2 hypothetical protein compare
BWI76_RS21480 -1.7 -4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS20965 -1.7 -1.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS01330 -1.7 -2.6 twin-arginine translocase subunit TatC compare
BWI76_RS05790 -1.7 -1.4 phage DNA-binding protein compare
BWI76_RS19770 -1.7 -1.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS24885 -1.7 -1.3 PTS galactitol transporter subunit IIB compare
BWI76_RS15950 -1.7 -1.4 dethiobiotin synthase compare
BWI76_RS04645 -1.6 -2.8 3-dehydroquinase compare
BWI76_RS15235 -1.6 -2.7 hypothetical protein compare
BWI76_RS25870 -1.6 -0.9 elongation factor Tu compare
BWI76_RS21350 -1.6 -3.4 anti-RNA polymerase sigma factor SigE compare
BWI76_RS15850 -1.6 -0.6 DUF1317 domain-containing protein compare
BWI76_RS08525 -1.6 -2.4 colicin transporter compare
BWI76_RS12275 -1.6 -4.9 hypothetical protein compare
BWI76_RS01775 -1.6 -1.1 hypothetical protein compare
BWI76_RS26570 -1.6 -1.7 anion permease compare
BWI76_RS24900 -1.5 -1.9 DeoR family transcriptional regulator compare
BWI76_RS25960 -1.5 -1.9 NUDIX hydrolase compare
BWI76_RS20895 -1.5 -1.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04705 -1.5 -2.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS12290 -1.5 -2.9 hypothetical protein compare
BWI76_RS05075 -1.5 -0.8 type II secretion system protein GspG compare
BWI76_RS05015 -1.5 -1.4 transcriptional regulator compare
BWI76_RS24075 -1.5 -2.1 glutathione synthase compare
BWI76_RS09635 -1.5 -0.8 amino acid ABC transporter ATP-binding protein compare
BWI76_RS09755 -1.5 -2.4 phosphoserine transaminase compare
BWI76_RS10910 -1.5 -1.2 hypothetical protein compare
BWI76_RS13955 -1.5 -1.3 hypothetical protein compare
BWI76_RS09690 -1.5 -1.2 dimethyl sulfoxide reductase compare
BWI76_RS16315 -1.5 -1.1 SirA-like protein compare
BWI76_RS20145 -1.5 -1.2 NADH-quinone oxidoreductase subunit K compare
BWI76_RS03180 -1.5 -2.5 phage transcriptional regulator, AlpA compare
BWI76_RS26075 -1.4 -2.0 DNA adenine methylase compare
BWI76_RS25645 -1.4 -4.1 shikimate dehydrogenase compare
BWI76_RS15825 -1.4 -2.9 hypothetical protein compare
BWI76_RS15760 -1.4 -1.1 hypothetical protein compare
BWI76_RS12255 -1.4 -6.3 hypothetical protein compare
BWI76_RS23480 -1.4 -4.9 EAL domain-containing protein compare
BWI76_RS06535 -1.4 -2.5 endopeptidase La compare
BWI76_RS23360 -1.4 -1.1 diaminopimelate decarboxylase compare
BWI76_RS25065 -1.4 -2.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS05835 -1.4 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS12400 -1.4 -3.3 TetR family transcriptional regulator compare
BWI76_RS20720 -1.4 -1.2 hypothetical protein compare
BWI76_RS21115 -1.4 -1.6 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS07255 -1.3 -1.0 hypothetical protein compare
BWI76_RS01585 -1.3 -1.9 transcriptional regulator compare
BWI76_RS04715 -1.3 -0.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS08500 -1.3 -2.2 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS27440 -1.3 -1.7 DNA helicase RecG compare
BWI76_RS12305 -1.3 -2.7 hypothetical protein compare
BWI76_RS06800 -1.3 -0.9 DUF2496 domain-containing protein compare
BWI76_RS08380 -1.3 -1.1 endonuclease VIII compare
BWI76_RS15840 -1.3 -2.5 prophage protein compare
BWI76_RS16525 -1.3 -3.8 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS09305 -1.3 -1.8 hypothetical protein compare
BWI76_RS01325 -1.3 -0.7 twin-arginine translocase subunit TatB compare
BWI76_RS08535 -1.3 -1.3 translocation protein TolB compare
BWI76_RS21100 -1.3 -1.7 nucleoside-diphosphate kinase compare
BWI76_RS16455 -1.3 -1.4 superoxide dismutase compare
BWI76_RS19840 -1.3 -1.0 hypothetical protein compare
BWI76_RS06735 -1.3 -1.2 50S ribosomal protein L31 compare
BWI76_RS04160 -1.3 -3.1 phosphoserine phosphatase compare
BWI76_RS21685 -1.3 -1.0 hypothetical protein compare
BWI76_RS12270 -1.3 -2.2 hypothetical protein compare
BWI76_RS27310 -1.3 -3.4 glycosyltransferase compare
BWI76_RS18270 -1.3 -1.6 hypothetical protein compare
BWI76_RS17530 -1.3 -1.9 hypothetical protein compare
BWI76_RS12210 -1.3 -5.0 hypothetical protein compare
BWI76_RS13820 -1.3 -1.0 hypothetical protein compare
BWI76_RS13625 -1.3 -1.6 hypothetical protein compare
BWI76_RS19700 -1.3 -1.8 deoxyribonuclease IV compare
BWI76_RS21075 -1.3 -1.2 membrane protein compare
BWI76_RS26620 -1.3 -0.8 Fe-S biogenesis protein NfuA compare
BWI76_RS20130 -1.3 -2.8 NADH-quinone oxidoreductase subunit N compare
BWI76_RS06740 -1.3 -2.4 50S ribosomal protein L36 compare
BWI76_RS12860 -1.3 -1.4 hypothetical protein compare
BWI76_RS12040 -1.2 -1.0 hypothetical protein compare
BWI76_RS12345 -1.2 -2.1 nitrite transporter compare
BWI76_RS04565 -1.2 -2.3 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS18375 -1.2 -1.9 hypothetical protein compare
BWI76_RS15095 -1.2 -1.7 isochorismatase compare
BWI76_RS19375 -1.2 -1.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS21235 -1.2 -0.9 hypothetical protein compare
BWI76_RS22805 -1.2 -5.5 GTP diphosphokinase compare
BWI76_RS19845 -1.2 -3.5 phosphatase compare
BWI76_RS12090 -1.2 -1.0 HNH endonuclease compare
BWI76_RS06680 -1.2 -0.8 hypothetical protein compare
BWI76_RS17655 -1.2 -1.7 MFS transporter compare
BWI76_RS12070 -1.2 -0.7 hypothetical protein compare
BWI76_RS14515 -1.2 -2.8 yersiniabactin-iron ABC transporter permease ATP-binding protein YbtQ compare
BWI76_RS16275 -1.2 -1.6 fumarate hydratase FumA compare
BWI76_RS15730 -1.2 -2.0 hypothetical protein compare
BWI76_RS13400 -1.2 -2.8 GntR family transcriptional regulator compare
BWI76_RS23805 -1.2 -4.6 ssDNA exonuclease RecJ compare
BWI76_RS17280 -1.2 -1.8 patatin family protein compare
BWI76_RS18855 -1.2 -2.3 cysteine desulfurase NifS compare
BWI76_RS10575 -1.2 -1.0 polar amino acid ABC transporter permease compare
BWI76_RS07595 -1.2 -1.2 putative oxidoreductase compare
BWI76_RS26175 -1.2 -1.6 DeoR/GlpR family transcriptional regulator compare
BWI76_RS12470 -1.2 -0.9 thiosulfate sulfurtransferase PspE compare
BWI76_RS23810 -1.2 -1.7 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
BWI76_RS25320 -1.2 -2.4 glutamate synthase compare
BWI76_RS15765 -1.2 -2.2 hypothetical protein compare
BWI76_RS21500 -1.1 -2.3 membrane protein compare
BWI76_RS11790 -1.1 -1.4 acyl-CoA thioesterase compare
BWI76_RS11040 -1.1 -2.0 ribonuclease E compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms