Experiment set23IT007 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Group: supernatant
Media: + supernatant from Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered (1 X)
Culturing: Koxy_ML2a, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Cat_Manuel_Trenton on 3-Mar-21

Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms

SEED Subsystems

Subsystem #Specific
DNA-replication 1
DNA Repair Base Excision 1
DNA repair, bacterial RecFOR pathway 1
Pyridoxin (Vitamin B6) Biosynthesis 1
Thiamin biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I 2 2 1
superpathway of thiamine diphosphate biosynthesis I 10 10 2
superpathway of thiamine diphosphate biosynthesis II 11 9 2
thiazole component of thiamine diphosphate biosynthesis I 6 6 1
pyridoxal 5'-phosphate biosynthesis I 7 7 1
thiazole component of thiamine diphosphate biosynthesis II 7 5 1
superpathway of thiamine diphosphate biosynthesis III (eukaryotes) 7 3 1
superpathway of pyridoxal 5'-phosphate biosynthesis and salvage 12 12 1