Experiment set22IT075 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Choline chloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -8.5 -19.0 response regulator compare
PFLU_RS10765 -8.0 -31.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS19015 -7.5 -17.9 anti-sigma factor compare
PFLU_RS06430 -5.5 -36.8 RNA polymerase sigma factor RpoS compare
PFLU_RS20575 -4.8 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS21530 -4.8 -39.3 transporter substrate-binding domain-containing protein compare
PFLU_RS27890 -4.7 -4.6 hypothetical protein compare
PFLU_RS27365 -4.4 -8.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27805 -4.4 -3.0 sarcosine oxidase subunit gamma family protein compare
PFLU_RS27860 -4.4 -6.7 glycine-betaine demethylase subunit GbcB compare
PFLU_RS27820 -4.4 -9.3 sarcosine oxidase subunit beta compare
PFLU_RS27815 -4.4 -6.0 sarcosine oxidase subunit delta compare
PFLU_RS27370 -4.4 -10.9 anthranilate phosphoribosyltransferase compare
PFLU_RS27875 -4.3 -9.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS27865 -4.3 -13.2 glycine-betaine demethylase subunit GbcA compare
PFLU_RS27870 -4.2 -13.3 electron transfer flavoprotein subunit beta compare
PFLU_RS27885 -4.2 -12.1 dimethylglycine demethylation protein DgcA compare
PFLU_RS27895 -4.1 -11.0 membrane dipeptidase compare
PFLU_RS27810 -4.1 -16.3 sarcosine oxidase subunit alpha compare
PFLU_RS27825 -4.1 -12.3 serine hydroxymethyltransferase compare
PFLU_RS27975 -4.1 -7.3 choline ABC transporter ATP-binding protein compare
PFLU_RS03240 -4.1 -15.0 copper-translocating P-type ATPase compare
PFLU_RS27970 -4.1 -10.4 choline ABC transporter permease subunit compare
PFLU_RS28390 -4.0 -10.9 methionine biosynthesis protein MetW compare
PFLU_RS20565 -4.0 -14.6 3-isopropylmalate dehydrogenase compare
PFLU_RS27965 -3.9 -13.8 choline ABC transporter substrate-binding protein compare
PFLU_RS25640 -3.9 -12.0 ketol-acid reductoisomerase compare
PFLU_RS27995 -3.8 -16.2 choline dehydrogenase conserved
PFLU_RS08670 -3.8 -10.1 heme lyase CcmF/NrfE family subunit compare
PFLU_RS02410 -3.8 -4.5 multidrug efflux SMR transporter compare
PFLU_RS01900 -3.8 -6.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS00180 -3.8 -4.5 tryptophan synthase subunit beta compare
PFLU_RS01605 -3.8 -8.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27990 -3.8 -8.4 betaine-aldehyde dehydrogenase conserved
PFLU_RS06055 -3.8 -2.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS28535 -3.8 -15.4 dihydroxy-acid dehydratase compare
PFLU_RS04465 -3.7 -9.6 ATP phosphoribosyltransferase compare
PFLU_RS20580 -3.7 -12.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS24765 -3.7 -21.6 2-isopropylmalate synthase compare
PFLU_RS01620 -3.7 -7.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04470 -3.7 -10.3 histidinol dehydrogenase compare
PFLU_RS20510 -3.7 -14.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20540 -3.6 -10.8 phosphoribosylanthranilate isomerase compare
PFLU_RS28385 -3.6 -14.9 homoserine O-acetyltransferase compare
PFLU_RS08655 -3.5 -7.1 heme ABC transporter permease compare
PFLU_RS28645 -3.5 -15.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29290 -3.5 -10.7 hypothetical protein compare
PFLU_RS27955 -3.5 -12.0 GlxA family transcriptional regulator compare
PFLU_RS22600 -3.5 -6.4 RNA polymerase sigma factor SigX compare
PFLU_RS28165 -3.4 -12.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08660 -3.4 -6.0 heme exporter protein CcmD compare
PFLU_RS00175 -3.4 -4.7 tryptophan synthase subunit alpha compare
PFLU_RS02590 -3.4 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25360 -3.4 -7.5 glutamate 5-kinase compare
PFLU_RS25645 -3.4 -3.2 acetolactate synthase small subunit compare
PFLU_RS08665 -3.3 -7.6 cytochrome c maturation protein CcmE compare
PFLU_RS12975 -3.3 -6.2 DUF934 domain-containing protein compare
PFLU_RS12980 -3.3 -10.4 nitrite/sulfite reductase compare
PFLU_RS27880 -3.3 -9.1 dimethylglycine demethylation protein DgcB compare
PFLU_RS01610 -3.3 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20515 -3.1 -5.2 amidophosphoribosyltransferase compare
PFLU_RS02275 -3.1 -4.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS22740 -3.1 -3.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS29515 -3.0 -12.2 RidA family protein compare
PFLU_RS27985 -3.0 -7.5 transcriptional regulator BetI conserved
PFLU_RS05690 -3.0 -2.8 Grx4 family monothiol glutaredoxin compare
PFLU_RS18505 -2.9 -10.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22105 -2.9 -4.7 cysteine synthase CysM compare
PFLU_RS26290 -2.7 -1.8 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS08650 -2.7 -3.1 heme exporter protein CcmB compare
PFLU_RS01625 -2.6 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28655 -2.6 -12.7 HAD family hydrolase compare
PFLU_RS24025 -2.5 -12.5 quinolinate synthase NadA compare
PFLU_RS22095 -2.5 -13.1 GTP diphosphokinase compare
PFLU_RS29095 -2.5 -19.0 polyphosphate kinase 1 compare
PFLU_RS07690 -2.4 -11.5 helix-turn-helix transcriptional regulator compare
PFLU_RS25715 -2.4 -5.2 RNA polymerase-binding protein DksA compare
PFLU_RS25215 -2.4 -11.4 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS20290 -2.4 -2.9 integration host factor subunit alpha compare
PFLU_RS13010 -2.4 -4.2 Fe-S biogenesis protein NfuA compare
PFLU_RS04140 -2.4 -3.5 response regulator transcription factor compare
PFLU_RS29480 -2.3 -17.1 exodeoxyribonuclease III compare
PFLU_RS08675 -2.3 -4.7 DsbE family thiol:disulfide interchange protein compare
PFLU_RS26250 -2.3 -13.6 ferredoxin--NADP reductase compare
PFLU_RS27980 -2.2 -12.4 BCCT family transporter compare
PFLU_RS15990 -2.2 -1.9 SDR family oxidoreductase compare
PFLU_RS07665 -2.2 -1.5 type I DNA topoisomerase compare
PFLU_RS29505 -2.2 -6.3 DNA-directed RNA polymerase subunit omega compare
PFLU_RS22520 -2.2 -3.8 GntR family transcriptional regulator compare
PFLU_RS23305 -2.1 -10.0 arginine N-succinyltransferase compare
PFLU_RS01895 -2.1 -6.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS13915 -2.1 -5.1 hypothetical protein compare
PFLU_RS23380 -2.1 -3.1 HAD-IB family hydrolase compare
PFLU_RS09055 -2.1 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23310 -2.1 -8.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27475 -2.0 -3.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS25205 -2.0 -5.7 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS18670 -2.0 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS25735 -1.9 -2.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00415 -1.9 -1.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS11380 -1.9 -2.4 sarcosine oxidase subunit delta compare
PFLU_RS21315 -1.9 -6.1 GTP cyclohydrolase I FolE compare
PFLU_RS03970 -1.8 -8.7 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25210 -1.8 -5.9 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS28965 -1.8 -9.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22310 -1.8 -13.2 methyl-accepting chemotaxis protein compare
PFLU_RS25730 -1.8 -8.6 PAS domain S-box protein compare
PFLU_RS29875 -1.7 -11.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS25220 -1.7 -8.0 ubiquinol oxidase subunit II compare
PFLU_RS08125 -1.6 -3.5 integration host factor subunit beta compare
PFLU_RS18665 -1.6 -2.5 NADH-quinone oxidoreductase subunit L compare
PFLU_RS04935 -1.6 -4.8 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS04455 -1.6 -4.8 BolA family transcriptional regulator compare
PFLU_RS18645 -1.6 -1.7 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS08410 -1.6 -6.4 HTH-type transcriptional regulator CysB compare
PFLU_RS26890 -1.6 -6.8 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS07225 -1.5 -10.7 L-aspartate oxidase compare
PFLU_RS23235 -1.5 -3.6 Arc family DNA-binding protein compare
PFLU_RS04325 -1.5 -9.0 ribonuclease G compare
PFLU_RS23130 -1.5 -7.5 response regulator transcription factor compare
PFLU_RS05655 -1.5 -2.5 DeoR/GlpR family transcriptional regulator compare
PFLU_RS18755 -1.5 -7.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS24205 -1.5 -1.9 DNA binding protein compare
PFLU_RS25815 -1.5 -2.7 transcription termination/antitermination protein NusA compare
PFLU_RS26565 -1.5 -1.6 rRNA maturation RNase YbeY compare
PFLU_RS18640 -1.5 -2.5 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02350 -1.5 -6.6 carbamoyltransferase compare
PFLU_RS25740 -1.4 -4.1 polynucleotide adenylyltransferase PcnB compare
PFLU_RS03235 -1.4 -4.5 Cu(I)-responsive transcriptional regulator compare
PFLU_RS25200 -1.4 -7.2 protoheme IX farnesyltransferase compare
PFLU_RS30165 -1.4 -5.5 ParA family protein compare
PFLU_RS30345 -1.4 -3.3 DUF2559 family protein compare
PFLU_RS18530 -1.4 -3.3 DNA translocase FtsK compare
PFLU_RS24095 -1.4 -0.9 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS07910 -1.4 -2.1 type 1 fimbrial protein compare
PFLU_RS29880 -1.4 -8.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS14995 -1.3 -2.5 response regulator transcription factor compare
PFLU_RS24330 -1.3 -4.8 phosphogluconate dehydratase compare
PFLU_RS08165 -1.3 -2.0 acyl carrier protein compare
PFLU_RS29885 -1.3 -6.9 LysR family transcriptional regulator compare
PFLU_RS18625 -1.3 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS12660 -1.3 -4.9 hypothetical protein compare
PFLU_RS31675 -1.3 -1.8 hypothetical protein compare
PFLU_RS31755 -1.3 -1.4 hypothetical protein compare
PFLU_RS16390 -1.3 -1.2 DUF411 domain-containing protein compare
PFLU_RS29400 -1.3 -2.1 DUF1127 domain-containing protein compare
PFLU_RS23920 -1.3 -1.8 septation protein A compare
PFLU_RS23040 -1.3 -6.4 aminodeoxychorismate lyase compare
PFLU_RS25755 -1.3 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS29750 -1.3 -4.0 phosphate signaling complex protein PhoU compare
PFLU_RS25585 -1.2 -0.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25225 -1.2 -5.0 disulfide bond formation protein B compare
PFLU_RS22990 -1.2 -3.8 ADP-ribosylglycohydrolase compare
PFLU_RS18615 -1.2 -1.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS31440 -1.2 -1.7 hypothetical protein compare
PFLU_RS02115 -1.2 -2.4 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS09540 -1.2 -2.4 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS24085 -1.2 -1.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS19165 -1.2 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS14450 -1.2 -2.0 AzlD domain-containing protein compare
PFLU_RS04075 -1.2 -1.8 hypothetical protein compare
PFLU_RS15310 -1.2 -1.8 YgdI/YgdR family lipoprotein compare
PFLU_RS24090 -1.2 -1.7 Holliday junction branch migration protein RuvA compare
PFLU_RS08185 -1.2 -6.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS23065 -1.1 -6.5 phosphate acyltransferase PlsX compare
PFLU_RS13540 -1.1 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00460 -1.1 -8.0 glutamate/aspartate:proton symporter GltP compare
PFLU_RS30420 -1.1 -3.6 hypothetical protein compare
PFLU_RS19555 -1.1 -1.4 histidine phosphatase family protein compare
PFLU_RS10295 -1.1 -4.1 HAD-IA family hydrolase compare
PFLU_RS20660 -1.1 -8.3 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS31800 -1.1 -1.3 hypothetical protein compare
PFLU_RS03770 -1.1 -7.4 sulfate adenylyltransferase subunit CysN compare
PFLU_RS17060 -1.1 -1.8 monooxygenase compare
PFLU_RS29810 -1.1 -7.9 LysR family transcriptional regulator compare
PFLU_RS17675 -1.1 -3.7 hypothetical protein compare
PFLU_RS30160 -1.1 -2.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS03765 -1.1 -6.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS21995 -1.1 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS29280 -1.1 -4.8 tyrosine recombinase XerC compare
PFLU_RS05250 -1.1 -1.8 elongation factor 4 compare
PFLU_RS22665 -1.1 -3.0 alanyl-tRNA editing protein compare
PFLU_RS19520 -1.1 -2.8 substrate-binding domain-containing protein compare
PFLU_RS02360 -1.1 -5.9 PIG-L family deacetylase compare
PFLU_RS29755 -1.1 -6.7 phosphate ABC transporter ATP-binding protein compare
PFLU_RS20955 -1.1 -2.2 DUF1028 domain-containing protein compare
PFLU_RS02825 -1.1 -1.8 phosphate starvation-inducible protein PsiF compare
PFLU_RS02565 -1.0 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS28320 -1.0 -1.6 glutathione synthase compare
PFLU_RS18595 -1.0 -2.8 cupin domain-containing protein compare
PFLU_RS04945 -1.0 -2.6 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS13920 -1.0 -2.6 recombination protein NinG compare
PFLU_RS19170 -1.0 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS26595 -1.0 -1.4 lipoprotein compare
PFLU_RS00895 -1.0 -2.7 hypothetical protein compare
PFLU_RS05965 -1.0 -1.1 hypothetical protein compare
PFLU_RS24535 -1.0 -2.0 DUF3509 domain-containing protein compare
PFLU_RS27795 -1.0 -5.7 formaldehyde dehydrogenase, glutathione-independent compare
PFLU_RS06320 -1.0 -2.1 OmpH family outer membrane protein compare
PFLU_RS29255 -1.0 -2.2 iron donor protein CyaY compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Choline chloride in Pseudomonas fluorescens SBW25-INTG

For carbon source Choline chloride across organisms