Experiment set22IT074 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Choline chloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -8.1 -21.9 response regulator compare
PFLU_RS10765 -7.7 -30.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS19015 -7.5 -30.6 anti-sigma factor compare
PFLU_RS06430 -5.4 -35.8 RNA polymerase sigma factor RpoS compare
PFLU_RS20575 -5.1 -6.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS21530 -4.9 -37.4 transporter substrate-binding domain-containing protein compare
PFLU_RS27890 -4.7 -6.4 hypothetical protein compare
PFLU_RS27805 -4.5 -3.1 sarcosine oxidase subunit gamma family protein compare
PFLU_RS27970 -4.4 -10.9 choline ABC transporter permease subunit compare
PFLU_RS27895 -4.4 -11.9 membrane dipeptidase compare
PFLU_RS03240 -4.4 -16.0 copper-translocating P-type ATPase compare
PFLU_RS27865 -4.3 -14.4 glycine-betaine demethylase subunit GbcA compare
PFLU_RS27815 -4.3 -6.5 sarcosine oxidase subunit delta compare
PFLU_RS27820 -4.3 -11.9 sarcosine oxidase subunit beta compare
PFLU_RS27860 -4.2 -8.1 glycine-betaine demethylase subunit GbcB compare
PFLU_RS27870 -4.2 -14.3 electron transfer flavoprotein subunit beta compare
PFLU_RS20565 -4.2 -14.6 3-isopropylmalate dehydrogenase compare
PFLU_RS27810 -4.2 -17.2 sarcosine oxidase subunit alpha compare
PFLU_RS08660 -4.2 -5.6 heme exporter protein CcmD compare
PFLU_RS27885 -4.1 -13.5 dimethylglycine demethylation protein DgcA compare
PFLU_RS01605 -4.1 -8.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28390 -4.1 -11.2 methionine biosynthesis protein MetW compare
PFLU_RS06055 -4.0 -2.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS27880 -4.0 -8.9 dimethylglycine demethylation protein DgcB compare
PFLU_RS08655 -4.0 -7.1 heme ABC transporter permease compare
PFLU_RS27365 -3.9 -10.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS08670 -3.9 -10.7 heme lyase CcmF/NrfE family subunit compare
PFLU_RS27875 -3.9 -12.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS27995 -3.9 -16.7 choline dehydrogenase conserved
PFLU_RS27370 -3.9 -14.2 anthranilate phosphoribosyltransferase compare
PFLU_RS01900 -3.9 -6.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24765 -3.9 -22.9 2-isopropylmalate synthase compare
PFLU_RS25640 -3.9 -14.2 ketol-acid reductoisomerase compare
PFLU_RS20540 -3.9 -11.3 phosphoribosylanthranilate isomerase compare
PFLU_RS20510 -3.8 -15.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01610 -3.8 -10.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS02590 -3.8 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28385 -3.8 -15.2 homoserine O-acetyltransferase compare
PFLU_RS01620 -3.8 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28535 -3.7 -16.3 dihydroxy-acid dehydratase compare
PFLU_RS28165 -3.7 -12.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25360 -3.7 -8.2 glutamate 5-kinase compare
PFLU_RS27955 -3.7 -11.9 GlxA family transcriptional regulator compare
PFLU_RS08650 -3.6 -4.2 heme exporter protein CcmB compare
PFLU_RS27965 -3.6 -15.3 choline ABC transporter substrate-binding protein compare
PFLU_RS25645 -3.6 -3.5 acetolactate synthase small subunit compare
PFLU_RS27975 -3.6 -8.0 choline ABC transporter ATP-binding protein compare
PFLU_RS20580 -3.6 -13.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27825 -3.5 -14.1 serine hydroxymethyltransferase compare
PFLU_RS02275 -3.4 -4.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS04470 -3.3 -12.8 histidinol dehydrogenase compare
PFLU_RS27990 -3.3 -9.9 betaine-aldehyde dehydrogenase conserved
PFLU_RS28645 -3.3 -15.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22520 -3.3 -5.3 GntR family transcriptional regulator compare
PFLU_RS27985 -3.3 -7.8 transcriptional regulator BetI conserved
PFLU_RS04465 -3.3 -10.3 ATP phosphoribosyltransferase compare
PFLU_RS29290 -3.2 -8.3 hypothetical protein compare
PFLU_RS00175 -3.2 -6.5 tryptophan synthase subunit alpha compare
PFLU_RS12980 -3.1 -10.9 nitrite/sulfite reductase compare
PFLU_RS00180 -3.1 -7.5 tryptophan synthase subunit beta compare
PFLU_RS08675 -3.1 -6.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS22740 -3.1 -4.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS01625 -3.0 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS13010 -3.0 -3.5 Fe-S biogenesis protein NfuA compare
PFLU_RS12975 -3.0 -6.4 DUF934 domain-containing protein compare
PFLU_RS29515 -3.0 -13.0 RidA family protein compare
PFLU_RS01965 -2.9 -2.0 ATP-dependent protease subunit HslV compare
PFLU_RS22105 -2.9 -5.4 cysteine synthase CysM compare
PFLU_RS08665 -2.8 -7.7 cytochrome c maturation protein CcmE compare
PFLU_RS28655 -2.8 -13.7 HAD family hydrolase compare
PFLU_RS18505 -2.7 -10.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20290 -2.7 -3.8 integration host factor subunit alpha compare
PFLU_RS20515 -2.6 -6.8 amidophosphoribosyltransferase compare
PFLU_RS05690 -2.6 -3.0 Grx4 family monothiol glutaredoxin compare
PFLU_RS07690 -2.6 -11.4 helix-turn-helix transcriptional regulator compare
PFLU_RS24025 -2.5 -12.2 quinolinate synthase NadA compare
PFLU_RS29480 -2.5 -16.3 exodeoxyribonuclease III compare
PFLU_RS22095 -2.4 -14.0 GTP diphosphokinase compare
PFLU_RS02410 -2.4 -5.1 multidrug efflux SMR transporter compare
PFLU_RS25715 -2.3 -6.8 RNA polymerase-binding protein DksA compare
PFLU_RS29095 -2.3 -17.5 polyphosphate kinase 1 compare
PFLU_RS09055 -2.3 -3.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS26250 -2.2 -14.1 ferredoxin--NADP reductase compare
PFLU_RS29505 -2.2 -6.5 DNA-directed RNA polymerase subunit omega compare
PFLU_RS23310 -2.2 -9.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS25205 -2.2 -7.0 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS22600 -2.2 -5.1 RNA polymerase sigma factor SigX compare
PFLU_RS23380 -2.2 -3.5 HAD-IB family hydrolase compare
PFLU_RS25735 -2.1 -1.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25215 -2.1 -11.8 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS04945 -2.1 -3.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS03970 -2.1 -8.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25220 -2.1 -10.0 ubiquinol oxidase subunit II compare
PFLU_RS25200 -2.1 -9.6 protoheme IX farnesyltransferase compare
PFLU_RS01910 -2.1 -1.9 sterol-binding protein compare
PFLU_RS27475 -2.1 -3.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS27980 -2.1 -11.7 BCCT family transporter compare
PFLU_RS00415 -2.0 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS18670 -2.0 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS13915 -1.9 -4.4 hypothetical protein compare
PFLU_RS23305 -1.8 -9.3 arginine N-succinyltransferase compare
PFLU_RS29255 -1.8 -3.9 iron donor protein CyaY compare
PFLU_RS30590 -1.8 -1.9 hypothetical protein compare
PFLU_RS12800 -1.7 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04455 -1.7 -5.0 BolA family transcriptional regulator compare
PFLU_RS22310 -1.7 -12.1 methyl-accepting chemotaxis protein compare
PFLU_RS25730 -1.7 -9.4 PAS domain S-box protein compare
PFLU_RS29880 -1.7 -10.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS18675 -1.7 -1.9 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS29755 -1.7 -9.8 phosphate ABC transporter ATP-binding protein compare
PFLU_RS08125 -1.6 -2.8 integration host factor subunit beta compare
PFLU_RS29875 -1.6 -11.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS18635 -1.6 -1.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS03555 -1.6 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS25210 -1.6 -6.3 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS28965 -1.6 -8.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23130 -1.5 -8.5 response regulator transcription factor compare
PFLU_RS18625 -1.5 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS18615 -1.5 -1.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS18665 -1.5 -2.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS30160 -1.5 -2.9 ParB/RepB/Spo0J family partition protein compare
PFLU_RS18950 -1.5 -7.2 MerR family DNA-binding transcriptional regulator compare
PFLU_RS05750 -1.5 -2.5 methionine--tRNA ligase compare
PFLU_RS24205 -1.5 -2.0 DNA binding protein compare
PFLU_RS03665 -1.5 -5.1 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS23235 -1.5 -2.8 Arc family DNA-binding protein compare
PFLU_RS28320 -1.5 -1.4 glutathione synthase compare
PFLU_RS13150 -1.4 -3.6 hypothetical protein compare
PFLU_RS21425 -1.4 -2.8 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS01895 -1.4 -4.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS18640 -1.4 -2.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS29750 -1.4 -4.5 phosphate signaling complex protein PhoU compare
PFLU_RS04140 -1.4 -3.0 response regulator transcription factor compare
PFLU_RS25190 -1.4 -2.3 hypothetical protein compare
PFLU_RS08410 -1.4 -6.5 HTH-type transcriptional regulator CysB compare
PFLU_RS29280 -1.4 -5.9 tyrosine recombinase XerC compare
PFLU_RS13895 -1.4 -1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS30165 -1.4 -5.8 ParA family protein compare
PFLU_RS25755 -1.3 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS24090 -1.3 -2.1 Holliday junction branch migration protein RuvA compare
PFLU_RS25585 -1.3 -0.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS15910 -1.3 -1.9 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS07225 -1.3 -9.2 L-aspartate oxidase compare
PFLU_RS18645 -1.3 -2.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS24900 -1.3 -2.9 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS22835 -1.3 -6.1 amidotransferase compare
PFLU_RS23885 -1.3 -2.8 transposase compare
PFLU_RS29165 -1.3 -2.3 TIGR02444 family protein compare
PFLU_RS10430 -1.3 -3.7 peptidase compare
PFLU_RS15200 -1.3 -2.8 ABC transporter substrate-binding protein compare
PFLU_RS19175 -1.2 -4.4 trigger factor compare
PFLU_RS09500 -1.2 -1.7 hypothetical protein compare
PFLU_RS23260 -1.2 -5.1 carbon storage regulator CsrA compare
PFLU_RS11380 -1.2 -1.8 sarcosine oxidase subunit delta compare
PFLU_RS14075 -1.2 -2.8 hypothetical protein compare
PFLU_RS02365 -1.2 -6.1 glycosyltransferase compare
PFLU_RS30345 -1.2 -2.4 DUF2559 family protein compare
PFLU_RS03765 -1.2 -6.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS02565 -1.2 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS20405 -1.2 -4.5 carbon storage regulator CsrA compare
PFLU_RS14500 -1.2 -4.4 hypothetical protein compare
PFLU_RS26890 -1.2 -4.9 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS29560 -1.2 -1.6 hypothetical protein compare
PFLU_RS06955 -1.2 -4.2 helix-turn-helix domain-containing protein compare
PFLU_RS22030 -1.2 -2.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS30510 -1.2 -3.5 glycosyltransferase family 4 protein compare
PFLU_RS25760 -1.1 -3.8 glucose-6-phosphate isomerase compare
PFLU_RS02350 -1.1 -6.0 carbamoyltransferase compare
PFLU_RS04930 -1.1 -7.1 PhoH family protein compare
PFLU_RS23065 -1.1 -6.2 phosphate acyltransferase PlsX compare
PFLU_RS18755 -1.1 -6.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS13795 -1.1 -2.4 hypothetical protein compare
PFLU_RS20260 -1.1 -3.8 terminase compare
PFLU_RS04325 -1.1 -7.2 ribonuclease G compare
PFLU_RS04075 -1.1 -1.0 hypothetical protein compare
PFLU_RS09535 -1.1 -1.2 TIGR03750 family conjugal transfer protein compare
PFLU_RS29020 -1.1 -5.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PFLU_RS24095 -1.1 -1.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS07275 -1.1 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS29885 -1.1 -5.7 LysR family transcriptional regulator compare
PFLU_RS13540 -1.1 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS23070 -1.1 -1.1 50S ribosomal protein L32 compare
PFLU_RS20660 -1.1 -7.5 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS26735 -1.1 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS01005 -1.0 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS02580 -1.0 -6.9 FtsH protease activity modulator HflK compare
PFLU_RS29810 -1.0 -6.7 LysR family transcriptional regulator compare
PFLU_RS29275 -1.0 -3.4 DUF484 family protein compare
PFLU_RS31075 -1.0 -4.2 hypothetical protein compare
PFLU_RS07235 -1.0 -3.1 sigma factor AlgU negative regulatory protein compare
PFLU_RS04220 -1.0 -5.0 FadR family transcriptional regulator compare
PFLU_RS05655 -1.0 -1.9 DeoR/GlpR family transcriptional regulator compare
PFLU_RS18530 -1.0 -3.1 DNA translocase FtsK compare
PFLU_RS00460 -1.0 -7.0 glutamate/aspartate:proton symporter GltP compare
PFLU_RS20955 -1.0 -1.6 DUF1028 domain-containing protein compare
PFLU_RS27375 -1.0 -4.4 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS22070 -1.0 -2.9 phosphoribosylglycinamide formyltransferase compare
PFLU_RS07665 -1.0 -1.7 type I DNA topoisomerase compare
PFLU_RS23220 -1.0 -2.7 tRNA-Arg compare
PFLU_RS29400 -1.0 -1.5 DUF1127 domain-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Choline chloride in Pseudomonas fluorescens SBW25-INTG

For carbon source Choline chloride across organisms