Experiment set22IT074 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.9 -4.4 phosphoglycerate kinase compare
BPHYT_RS17685 -6.8 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17690 -6.7 -7.9 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -6.6 -4.5 ketol-acid reductoisomerase compare
BPHYT_RS14050 -6.5 -7.7 UDP pyrophosphate phosphatase compare
BPHYT_RS17675 -6.5 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17945 -6.2 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS04955 -5.8 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS33835 -5.7 -10.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17680 -5.5 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06545 -5.4 -9.1 acetolactate synthase compare
BPHYT_RS02690 -5.4 -13.5 protoheme IX farnesyltransferase compare
BPHYT_RS33880 -5.3 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17670 -5.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS03150 -5.2 -13.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33865 -5.2 -9.3 tryptophan synthase alpha chain compare
BPHYT_RS16835 -5.2 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS15920 -5.2 -9.9 argininosuccinate synthase compare
BPHYT_RS08955 -5.1 -3.5 homoserine dehydrogenase compare
BPHYT_RS02590 -5.0 -9.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS12845 -4.8 -14.7 ATPase compare
BPHYT_RS18320 -4.7 -3.3 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -4.7 -9.6 phosphoserine aminotransferase compare
BPHYT_RS15915 -4.6 -10.6 ornithine carbamoyltransferase compare
BPHYT_RS17265 -4.5 -1.4 cell division protein compare
BPHYT_RS17405 -4.4 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS33875 -4.4 -7.2 tryptophan synthase subunit alpha compare
BPHYT_RS11390 -4.3 -10.5 penicillin-binding protein 1A compare
BPHYT_RS03135 -4.2 -13.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS12530 -4.2 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12725 -4.2 -17.8 regulator compare
BPHYT_RS18760 -4.1 -2.9 flagellar biosynthesis protein FliT compare
BPHYT_RS33645 -4.0 -2.8 homoserine kinase compare
BPHYT_RS17715 -4.0 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS14895 -3.9 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15620 -3.8 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06975 -3.8 -2.4 glutamate racemase compare
BPHYT_RS17380 -3.8 -8.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS06900 -3.7 -5.0 aspartate aminotransferase compare
BPHYT_RS33920 -3.6 -3.5 type II citrate synthase compare
BPHYT_RS14865 -3.6 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS13705 -3.6 -3.4 chorismate synthase compare
BPHYT_RS17700 -3.6 -3.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS01595 -3.5 -9.2 homoserine O-acetyltransferase compare
BPHYT_RS02685 -3.4 -8.3 cytochrome C oxidase subunit I compare
BPHYT_RS18255 -3.4 -2.5 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS06075 -3.4 -7.3 hypothetical protein compare
BPHYT_RS12055 -3.4 -15.1 phosphoenolpyruvate synthase compare
BPHYT_RS02525 -3.3 -7.1 membrane protein compare
BPHYT_RS09160 -3.2 -5.8 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS13245 -3.2 -6.9 hypothetical protein compare
BPHYT_RS04335 -3.2 -2.4 membrane protein compare
BPHYT_RS16245 -3.2 -3.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS12615 -3.1 -1.7 dihydrodipicolinate synthase compare
BPHYT_RS04965 -3.1 -7.4 ATP-binding protein compare
BPHYT_RS33840 -3.1 -5.6 amidophosphoribosyltransferase compare
BPHYT_RS34780 -3.1 -4.9 phytoene synthase compare
BPHYT_RS05010 -3.1 -5.5 RpiR family transcriptional regulator compare
BPHYT_RS17885 -3.1 -4.1 3-dehydroquinate synthase compare
BPHYT_RS35885 -3.1 -4.0 hypothetical protein compare
BPHYT_RS02640 -3.0 -15.6 cytochrome C oxidase compare
BPHYT_RS02955 -3.0 -10.8 formyltetrahydrofolate deformylase compare
BPHYT_RS06610 -3.0 -1.3 triosephosphate isomerase compare
BPHYT_RS02610 -3.0 -4.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS27175 -3.0 -1.3 DNA-binding protein compare
BPHYT_RS13645 -3.0 -19.3 threonine--tRNA ligase compare
BPHYT_RS18260 -2.9 -9.8 phenylacetic acid degradation protein compare
BPHYT_RS03280 -2.9 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS17890 -2.8 -2.1 shikimate kinase compare
BPHYT_RS16905 -2.8 -3.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS02665 -2.8 -12.1 MFS transporter compare
BPHYT_RS16735 -2.8 -6.4 phosphogluconate dehydratase compare
BPHYT_RS14400 -2.8 -3.2 anti-sigma factor compare
BPHYT_RS12150 -2.8 -12.6 PII uridylyl-transferase compare
BPHYT_RS02860 -2.7 -0.8 membrane protein compare
BPHYT_RS06065 -2.7 -11.0 cytochrome C compare
BPHYT_RS09145 -2.7 -11.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS16345 -2.7 -3.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS08945 -2.7 -8.4 hypothetical protein compare
BPHYT_RS13605 -2.6 -1.1 tRNA-Pro compare
BPHYT_RS02570 -2.6 -8.4 phosphocarrier protein HPr compare
BPHYT_RS15415 -2.6 -9.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS05155 -2.6 -3.9 acetyltransferase GCN5 compare
BPHYT_RS09330 -2.6 -10.6 phytoene synthase compare
BPHYT_RS16340 -2.5 -2.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06530 -2.5 -1.8 membrane protein compare
BPHYT_RS27570 -2.5 -2.1 universal stress protein UspA compare
BPHYT_RS17520 -2.5 -4.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS14755 -2.4 -3.2 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS17400 -2.4 -9.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS06405 -2.4 -3.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS01500 -2.4 -14.4 7-cyano-7-deazaguanine synthase compare
BPHYT_RS08125 -2.4 -9.1 ATPase compare
BPHYT_RS06070 -2.4 -5.9 cytochrome C compare
BPHYT_RS03535 -2.4 -6.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS09500 -2.3 -8.1 glucose-6-phosphate isomerase compare
BPHYT_RS17760 -2.3 -4.7 ABC transporter permease compare
BPHYT_RS04080 -2.3 -5.8 chloride channel protein compare
BPHYT_RS16710 -2.3 -0.7 LysR family transcriptional regulator compare
BPHYT_RS06600 -2.2 -1.8 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS12990 -2.2 -2.0 iron transporter compare
BPHYT_RS16210 -2.2 -3.2 peptidase compare
BPHYT_RS33915 -2.2 -7.8 isopropylmalate isomerase compare
BPHYT_RS01455 -2.1 -0.6 peptide deformylase compare
BPHYT_RS18970 -2.1 -10.6 chemotaxis protein compare
BPHYT_RS32395 -2.1 -1.3 hypothetical protein compare
BPHYT_RS26965 -2.1 -1.5 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS12465 -2.1 -1.2 inositol monophosphatase compare
BPHYT_RS17855 -2.0 -12.4 glutamate synthase compare
BPHYT_RS06155 -2.0 -6.6 DEAD/DEAH box helicase compare
BPHYT_RS01685 -2.0 -11.8 phytanoyl-CoA dioxygenase compare
BPHYT_RS08245 -2.0 -6.6 anti-sigma factor compare
BPHYT_RS10095 -2.0 -1.6 integrase compare
BPHYT_RS12590 -2.0 -2.2 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS06685 -2.0 -1.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17390 -2.0 -11.5 anthranilate synthase subunit I compare
BPHYT_RS17095 -2.0 -2.4 proline--tRNA ligase compare
BPHYT_RS17765 -2.0 -5.4 toluene ABC transporter ATP-binding protein compare
BPHYT_RS05030 -2.0 -3.6 sugar ABC transporter permease compare
BPHYT_RS06045 -2.0 -7.1 transaldolase compare
BPHYT_RS02045 -2.0 -5.1 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS14190 -2.0 -2.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS02760 -2.0 -0.9 cytochrome BD oxidase subunit II compare
BPHYT_RS16430 -2.0 -13.2 cytochrome C compare
BPHYT_RS18250 -1.9 -6.9 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS17745 -1.9 -7.2 toluene tolerance family protein compare
BPHYT_RS04595 -1.9 -1.9 cytoplasmic protein compare
BPHYT_RS06540 -1.9 -7.7 RNA polymerase sigma70 factor compare
BPHYT_RS06345 -1.9 -7.6 sensor histidine kinase compare
BPHYT_RS02765 -1.9 -1.0 cytochrome BD oxidase subunit I compare
BPHYT_RS01960 -1.9 -2.7 cytochrome C compare
BPHYT_RS23570 -1.9 -3.3 chemotaxis protein CheY compare
BPHYT_RS16435 -1.9 -10.5 alcohol dehydrogenase compare
BPHYT_RS06410 -1.9 -3.0 transcriptional regulator compare
BPHYT_RS02650 -1.9 -1.7 membrane protein compare
BPHYT_RS03410 -1.8 -1.7 queuine tRNA-ribosyltransferase compare
BPHYT_RS33900 -1.8 -8.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS14105 -1.8 -10.1 exopolyphosphatase compare
BPHYT_RS10100 -1.8 -3.7 dihydroxy-acid dehydratase compare
BPHYT_RS15305 -1.8 -6.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS14855 -1.8 -1.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16840 -1.8 -1.2 transketolase compare
BPHYT_RS28025 -1.8 -1.8 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS17395 -1.8 -2.2 anthranilate synthase subunit II compare
BPHYT_RS24500 -1.7 -2.0 histidine kinase compare
BPHYT_RS07325 -1.7 -0.9 GntR family transcriptional regulator compare
BPHYT_RS22190 -1.7 -1.3 nucleoid-structuring protein H-NS compare
BPHYT_RS08815 -1.7 -7.2 L-asparaginase (EC 3.5.1.1) (from data) compare
BPHYT_RS18620 -1.7 -5.1 transcriptional regulator compare
BPHYT_RS24315 -1.7 -1.9 phosphoribosyltransferase compare
BPHYT_RS17755 -1.7 -5.0 ABC transporter substrate-binding protein compare
BPHYT_RS25870 -1.7 -1.0 type III secretion system ATPase compare
BPHYT_RS23990 -1.7 -1.3 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS02435 -1.7 -1.3 hypothetical protein compare
BPHYT_RS33885 -1.7 -11.4 tRNA pseudouridine synthase A compare
BPHYT_RS30365 -1.7 -0.9 beta-lactamase compare
BPHYT_RS06710 -1.7 -1.2 hypothetical protein compare
BPHYT_RS08995 -1.7 -1.3 hypothetical protein compare
BPHYT_RS01510 -1.7 -6.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS36385 -1.7 -0.7 TetR family transcriptional regulator compare
BPHYT_RS09480 -1.6 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS18705 -1.6 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS26470 -1.6 -1.3 MFS transporter compare
BPHYT_RS04890 -1.6 -1.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS02130 -1.6 -3.3 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS02635 -1.6 -6.7 membrane protein compare
BPHYT_RS19535 -1.6 -5.6 XRE family transcriptional regulator compare
BPHYT_RS11555 -1.6 -2.1 allantoinase compare
BPHYT_RS14395 -1.6 -6.3 sugar dehydratase compare
BPHYT_RS29365 -1.6 -1.5 ATP-NAD kinase compare
BPHYT_RS06990 -1.6 -1.3 membrane protein compare
BPHYT_RS30465 -1.6 -1.1 short-chain dehydrogenase compare
BPHYT_RS03400 -1.6 -0.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS17920 -1.5 -1.1 protein CyaY compare
BPHYT_RS03645 -1.5 -1.3 tRNA dimethylallyltransferase compare
BPHYT_RS20185 -1.5 -1.4 sugar transferase compare
BPHYT_RS18655 -1.5 -1.7 3-oxoacyl-ACP synthase compare
BPHYT_RS06175 -1.5 -2.3 LPS biosynthesis compare
BPHYT_RS23275 -1.5 -2.7 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS12925 -1.5 -1.1 exodeoxyribonuclease III compare
BPHYT_RS17185 -1.5 -5.5 N-acetylglutamate synthase compare
BPHYT_RS17620 -1.5 -5.6 cytochrome C compare
BPHYT_RS14275 -1.5 -1.9 hypothetical protein compare
BPHYT_RS17525 -1.5 -1.4 glutaredoxin compare
BPHYT_RS02885 -1.5 -6.7 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS06535 -1.5 -3.8 membrane protein compare
BPHYT_RS32260 -1.5 -0.9 hypothetical protein compare
BPHYT_RS09315 -1.5 -0.6 chemotaxis protein CheY compare
BPHYT_RS18270 -1.5 -7.2 phenylacetic acid degradation protein compare
BPHYT_RS14270 -1.5 -5.1 electron transporter compare
BPHYT_RS25770 -1.4 -1.5 hypothetical protein compare
BPHYT_RS15615 -1.4 -2.9 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS02695 -1.4 -5.6 photosynthetic protein synthase I compare
BPHYT_RS25335 -1.4 -0.9 hypothetical protein compare
BPHYT_RS12840 -1.4 -2.8 pyruvate dehydrogenase compare
BPHYT_RS17955 -1.4 -5.5 cytochrome C compare
BPHYT_RS14900 -1.4 -2.2 prephenate dehydrogenase compare
BPHYT_RS19545 -1.4 -4.2 nuclear protein SET compare
BPHYT_RS01505 -1.4 -1.9 7-cyano-7-deazaguanine reductase compare
BPHYT_RS13890 -1.4 -2.5 RpiR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days across organisms