Experiment set22IT074 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27865 +7.1 2.7 ATPase compare
BPHYT_RS16470 +3.5 20.9 DeoR faimly transcriptional regulator compare
BPHYT_RS16950 +3.3 6.5 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS24105 +2.8 1.4 chloroperoxidase compare
BPHYT_RS26390 +2.0 1.4 antibiotic resistance protein compare
BPHYT_RS23875 +2.0 2.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS36060 +1.9 2.4 hypothetical protein compare
BPHYT_RS27890 +1.9 1.9 hypothetical protein compare
BPHYT_RS18910 +1.8 2.9 FlgN compare
BPHYT_RS19350 +1.8 6.6 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS28830 +1.8 1.3 LysR family transcriptional regulator compare
BPHYT_RS32860 +1.7 2.0 hypothetical protein compare
BPHYT_RS21650 +1.7 3.2 cobalamin synthesis protein P47K compare
BPHYT_RS10345 +1.6 1.9 flagellar motor protein MotB compare
BPHYT_RS19895 +1.6 3.5 rod shape-determining protein RodA compare
BPHYT_RS20780 +1.5 1.2 acyl-CoA dehydrogenase compare
BPHYT_RS25525 +1.5 5.0 hypothetical protein compare
BPHYT_RS27895 +1.5 2.2 enoyl-CoA hydratase compare
BPHYT_RS14550 +1.4 1.2 tRNA-Asn compare
BPHYT_RS01790 +1.4 12.0 LuxR family transcriptional regulator compare
BPHYT_RS05610 +1.3 9.5 DNA-cytosine methyltransferase compare
BPHYT_RS35085 +1.3 2.9 transcriptional regulator compare
BPHYT_RS32210 +1.3 2.3 hypothetical protein compare
BPHYT_RS00115 +1.3 2.2 acetaldehyde dehydrogenase compare
BPHYT_RS32495 +1.3 2.9 ABC transporter compare
BPHYT_RS07540 +1.3 1.3 hypothetical protein compare
BPHYT_RS19355 +1.3 8.4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS09650 +1.3 1.8 hypothetical protein compare
BPHYT_RS05320 +1.2 1.1 beta-lactamase compare
BPHYT_RS25820 +1.2 1.2 sugar ABC transporter compare
BPHYT_RS29855 +1.2 1.4 protein-tyrosine-phosphatase compare
BPHYT_RS01795 +1.2 9.0 histidine kinase compare
BPHYT_RS01975 +1.2 2.4 hypothetical protein compare
BPHYT_RS31890 +1.2 1.6 transposase compare
BPHYT_RS21215 +1.2 2.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS34030 +1.1 1.9 pilus assembly protein CpaB compare
BPHYT_RS12290 +1.1 1.9 universal stress protein UspA compare
BPHYT_RS30450 +1.1 1.1 ABC transporter permease compare
BPHYT_RS30645 +1.1 2.4 hypothetical protein compare
BPHYT_RS04400 +1.1 1.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS14585 +1.1 1.9 hypothetical protein compare
BPHYT_RS14005 +1.1 3.5 ABC transporter compare
BPHYT_RS18865 +1.1 2.2 flagellar L-ring protein FlgH compare
BPHYT_RS23650 +1.1 0.9 hypothetical protein compare
BPHYT_RS03090 +1.1 1.1 hypothetical protein compare
BPHYT_RS30055 +1.1 2.6 hypothetical protein compare
BPHYT_RS27100 +1.1 4.9 RNase II stability modulator compare
BPHYT_RS03775 +1.1 0.9 peroxidase compare
BPHYT_RS21700 +1.1 2.2 phosphotransacetylase compare
BPHYT_RS10165 +1.0 1.6 transcriptional regulator compare
BPHYT_RS33740 +1.0 2.7 hypothetical protein compare
BPHYT_RS10065 +1.0 1.2 cytochrome C oxidase subunit I compare
BPHYT_RS04095 +1.0 1.4 SAM-dependent methyltransferase PhcB compare
BPHYT_RS01945 +1.0 1.8 hypothetical protein compare
BPHYT_RS25025 +1.0 1.9 acyl-CoA dehydrogenase compare
BPHYT_RS13815 +1.0 3.0 hypothetical protein compare
BPHYT_RS35495 +1.0 1.8 nucleotide pyrophosphohydrolase compare
BPHYT_RS14660 +1.0 2.3 hypothetical protein compare
BPHYT_RS35310 +1.0 1.5 GCN5 family N-acetyltransferase compare
BPHYT_RS07220 +1.0 1.3 GCN5 family acetyltransferase compare
BPHYT_RS02710 +1.0 1.1 hypothetical protein compare
BPHYT_RS31585 +1.0 2.0 universal stress protein UspA compare
BPHYT_RS08000 +1.0 2.1 antibiotic biosynthesis monooxygenase compare
BPHYT_RS04750 +1.0 2.8 uroporphyrin-III C-methyltransferase compare
BPHYT_RS33525 +1.0 2.6 hypothetical protein compare
BPHYT_RS08825 +1.0 2.5 tartronate semialdehyde reductase compare
BPHYT_RS19025 +1.0 5.2 transcriptional regulator compare
BPHYT_RS36140 +1.0 2.4 hypothetical protein compare
BPHYT_RS10645 +1.0 1.4 cyanate hydratase compare
BPHYT_RS02135 +0.9 1.6 glyoxylate reductase compare
BPHYT_RS04370 +0.9 1.0 glycosyl transferase compare
BPHYT_RS23445 +0.9 1.3 hexuronate transporter compare
BPHYT_RS04810 +0.9 1.5 cytochrome C compare
BPHYT_RS00885 +0.9 1.5 chemotaxis protein CheY compare
BPHYT_RS28720 +0.9 1.8 shikimate dehydrogenase compare
BPHYT_RS02985 +0.9 1.7 MaoC family dehydratase compare
BPHYT_RS11655 +0.9 1.7 chromosome partitioning protein ParB compare
BPHYT_RS34920 +0.9 2.1 IclR family transcriptional regulator compare
BPHYT_RS08765 +0.9 0.8 ABC transporter ATP-binding protein compare
BPHYT_RS27545 +0.9 1.5 histidine kinase compare
BPHYT_RS20840 +0.9 1.5 beta-lactamase compare
BPHYT_RS06470 +0.9 1.1 membrane protein compare
BPHYT_RS30945 +0.9 2.4 LacI family transcriptional regulator compare
BPHYT_RS13465 +0.9 2.6 hypothetical protein compare
BPHYT_RS16290 +0.9 0.8 hypothetical protein compare
BPHYT_RS23535 +0.9 1.4 ABC transporter substrate-binding protein compare
BPHYT_RS24760 +0.9 1.2 cytochrome B561 compare
BPHYT_RS35480 +0.9 1.3 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS28280 +0.9 1.6 hypothetical protein compare
BPHYT_RS16500 +0.9 1.1 MIP family channel protein compare
BPHYT_RS07925 +0.8 1.8 glutamine amidotransferase compare
BPHYT_RS34250 +0.8 3.2 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS23455 +0.8 0.8 phosphorylase compare
BPHYT_RS18600 +0.8 1.3 glutathione S-transferase compare
BPHYT_RS21770 +0.8 2.2 aldehyde dehydrogenase compare
BPHYT_RS30530 +0.8 1.0 ABC transporter substrate-binding protein compare
BPHYT_RS06425 +0.8 1.9 methylglyoxal synthase compare
BPHYT_RS15005 +0.8 2.7 FAD-binding monooxygenase compare
BPHYT_RS08405 +0.8 1.1 hypothetical protein compare
BPHYT_RS36035 +0.8 0.9 hypothetical protein compare
BPHYT_RS16335 +0.8 0.9 membrane protein compare
BPHYT_RS27410 +0.8 1.5 amidohydrolase compare
BPHYT_RS03065 +0.8 1.4 LuxR family transcriptional regulator compare
BPHYT_RS30905 +0.8 1.2 histidine kinase compare
BPHYT_RS11215 +0.8 5.9 ribose ABC transporter ATPase compare
BPHYT_RS04005 +0.8 1.1 GDP-L-fucose synthase compare
BPHYT_RS34240 +0.8 2.0 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS22330 +0.8 2.3 PhoB family transcriptional regulator compare
BPHYT_RS14740 +0.8 3.4 threonine-phosphate decarboxylase compare
BPHYT_RS36440 +0.8 1.3 hypothetical protein compare
BPHYT_RS30010 +0.8 1.1 cell division protein compare
BPHYT_RS01965 +0.8 1.1 tRNA-Ala compare
BPHYT_RS19040 +0.8 4.8 aquaporin Z compare
BPHYT_RS20905 +0.8 1.2 hypothetical protein compare
BPHYT_RS21025 +0.8 0.9 cation-binding protein compare
BPHYT_RS21220 +0.8 1.8 universal stress protein A compare
BPHYT_RS28515 +0.8 3.3 mannonate dehydratase compare
BPHYT_RS32150 +0.8 1.2 hypothetical protein compare
BPHYT_RS04010 +0.8 0.8 glycosyl transferase compare
BPHYT_RS35215 +0.8 1.0 dehydrogenase compare
BPHYT_RS23645 +0.8 1.7 phosphohydrolase compare
BPHYT_RS26115 +0.8 2.1 polysaccharide deacetylase compare
BPHYT_RS11130 +0.8 3.4 chemotaxis protein compare
BPHYT_RS30020 +0.8 1.5 arsenic transporter compare
BPHYT_RS20630 +0.8 1.4 patatin compare
BPHYT_RS07255 +0.8 2.4 4-oxalocrotonate decarboxylase compare
BPHYT_RS18855 +0.8 4.0 flagellar rod assembly protein FlgJ compare
BPHYT_RS28620 +0.7 1.7 enoyl-CoA hydratase compare
BPHYT_RS13000 +0.7 2.7 phosphodiesterase compare
BPHYT_RS09765 +0.7 1.3 G-D-S-L family lipolytic protein compare
BPHYT_RS22465 +0.7 1.6 zinc carboxypeptidase-like protein compare
BPHYT_RS11125 +0.7 1.1 alkylhydroperoxidase compare
BPHYT_RS27370 +0.7 1.5 CoA transferase compare
BPHYT_RS22560 +0.7 3.4 flagellar transcriptional regulator FlhD compare
BPHYT_RS11060 +0.7 1.3 4-hydroxybenzoate 3-monooxygenase compare
BPHYT_RS02410 +0.7 1.2 alpha/beta hydrolase compare
BPHYT_RS04220 +0.7 0.7 hypothetical protein compare
BPHYT_RS28705 +0.7 0.7 IclR family transcriptional regulator compare
BPHYT_RS07755 +0.7 5.2 diguanylate cyclase compare
BPHYT_RS04645 +0.7 3.3 hypothetical protein compare
BPHYT_RS06935 +0.7 1.0 hypothetical protein compare
BPHYT_RS21465 +0.7 1.5 TetR family transcriptional regulator compare
BPHYT_RS09000 +0.7 0.7 competence protein ComE compare
BPHYT_RS15585 +0.7 1.7 acetyltransferase compare
BPHYT_RS05330 +0.7 1.2 phosphohydrolase compare
BPHYT_RS03820 +0.7 1.5 major facilitator superfamily protein compare
BPHYT_RS08130 +0.7 0.9 transposase compare
BPHYT_RS07190 +0.7 1.4 acetyltransferase compare
BPHYT_RS30880 +0.7 1.8 peptidase S13 compare
BPHYT_RS31470 +0.7 1.8 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS23830 +0.7 0.8 acetyl-CoA hydrolase compare
BPHYT_RS32730 +0.7 1.9 histidine phosphatase compare
BPHYT_RS31600 +0.7 1.1 hypothetical protein compare
BPHYT_RS04920 +0.7 0.8 aspartate 1-decarboxylase compare
BPHYT_RS06495 +0.7 2.3 glucose-1-dehydrogenase compare
BPHYT_RS20215 +0.7 1.3 RNA polymerase sigma 70 compare
BPHYT_RS04290 +0.7 0.7 glycosyl transferase family 2 compare
BPHYT_RS35955 +0.7 0.7 hypothetical protein compare
BPHYT_RS35585 +0.7 1.8 hypothetical protein compare
BPHYT_RS01315 +0.7 1.6 cupin compare
BPHYT_RS08365 +0.7 2.8 3-oxoacyl-ACP reductase compare
BPHYT_RS13390 +0.7 0.6 IclR family transcriptional regulator compare
BPHYT_RS16590 +0.7 3.4 Fis family transcriptional regulator compare
BPHYT_RS09825 +0.7 1.1 Fe-S protein compare
BPHYT_RS13320 +0.7 0.8 allantoate amidohydrolase compare
BPHYT_RS33615 +0.7 1.6 decarboxylase compare
BPHYT_RS16020 +0.7 1.1 AsnC family transcriptional regulator compare
BPHYT_RS22925 +0.7 2.8 pilus assembly protein TadB compare
BPHYT_RS32115 +0.7 1.2 hypothetical protein compare
BPHYT_RS29840 +0.7 0.9 polysaccharide biosynthesis protein compare
BPHYT_RS31745 +0.7 3.1 ABC transporter ATP-binding protein compare
BPHYT_RS23675 +0.7 1.0 lysine transporter LysE compare
BPHYT_RS20665 +0.7 0.9 LysR family transcriptional regulator compare
BPHYT_RS09310 +0.7 2.7 sensor histidine kinase compare
BPHYT_RS29395 +0.7 1.3 hydroxypyruvate isomerase compare
BPHYT_RS29485 +0.7 1.4 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS07335 +0.7 1.9 nitrate ABC transporter permease compare
BPHYT_RS26975 +0.7 1.2 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS28150 +0.7 2.7 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS05630 +0.7 1.3 glutathione S-transferase compare
BPHYT_RS11810 +0.7 1.2 LysR family transcriptional regulator compare
BPHYT_RS28790 +0.6 1.3 membrane protein compare
BPHYT_RS13130 +0.6 1.0 metallophosphatase compare
BPHYT_RS25410 +0.6 1.5 porin compare
BPHYT_RS10005 +0.6 0.7 hypothetical protein compare
BPHYT_RS07860 +0.6 1.1 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS08410 +0.6 0.8 dehydrogenase compare
BPHYT_RS16855 +0.6 2.3 16S rRNA methyltransferase compare
BPHYT_RS06150 +0.6 1.8 aldehyde dehydrogenase compare
BPHYT_RS12050 +0.6 1.7 hypothetical protein compare
BPHYT_RS28880 +0.6 2.5 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS04560 +0.6 1.0 Hcp1 family type VI secretion system effector compare
BPHYT_RS23625 +0.6 2.0 membrane protein compare
BPHYT_RS05410 +0.6 2.3 beta-lactamase compare
BPHYT_RS06510 +0.6 1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS11100 +0.6 1.2 methyltransferase compare
BPHYT_RS28710 +0.6 1.3 3-(2-hydroxyphenyl) propionic acid transporter compare
BPHYT_RS28305 +0.6 0.9 protein tyrosine phosphatase compare
BPHYT_RS23960 +0.6 3.0 sugar ABC transporter compare
BPHYT_RS35770 +0.6 0.7 glyoxalase compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days across organisms