Experiment set22IT074 for Burkholderia phytofirmans PsJN
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Group: in plantaMedia: + Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Culturing: BFirm_ML3_Marta, pot, at 26 (C), (Solid)
By: Marta on 25-Mar-22
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Arginine and proline metabolism
- Glutamate metabolism
- Alanine and aspartate metabolism
- Valine, leucine and isoleucine degradation
- Cyanoamino acid metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-asparagine degradation I | 1 | 1 | 1 |
| L-proline degradation I | 3 | 3 | 2 |
| proline to cytochrome bo oxidase electron transfer | 2 | 2 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| L-arginine degradation I (arginase pathway) | 3 | 1 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 2 | 1 |
| ethene biosynthesis II (microbes) | 4 | 1 | 1 |
| N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation | 5 | 2 | 1 |
| L-leucine degradation I | 6 | 5 | 1 |
| β-alanine biosynthesis II | 6 | 4 | 1 |
| (5R)-carbapenem carboxylate biosynthesis | 6 | 1 | 1 |
| L-Nδ-acetylornithine biosynthesis | 7 | 4 | 1 |
| L-citrulline biosynthesis | 8 | 6 | 1 |
| valproate β-oxidation | 9 | 6 | 1 |
| superpathway of coenzyme A biosynthesis II (plants) | 10 | 8 | 1 |
| superpathway of L-citrulline metabolism | 12 | 8 | 1 |
| oleate β-oxidation | 35 | 29 | 1 |