Experiment set22IT073 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -7.2 -5.0 imidazole glycerol phosphate synthase compare
BPHYT_RS16835 -7.1 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17680 -6.5 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06555 -6.5 -4.5 ketol-acid reductoisomerase compare
BPHYT_RS17685 -6.4 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17670 -6.1 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS03150 -5.9 -13.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33880 -5.7 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33865 -5.4 -8.2 tryptophan synthase alpha chain compare
BPHYT_RS15920 -5.3 -8.8 argininosuccinate synthase compare
BPHYT_RS15915 -5.3 -7.2 ornithine carbamoyltransferase compare
BPHYT_RS06545 -5.3 -8.8 acetolactate synthase compare
BPHYT_RS13705 -5.3 -3.4 chorismate synthase compare
BPHYT_RS12845 -5.2 -16.5 ATPase compare
BPHYT_RS08955 -5.0 -3.5 homoserine dehydrogenase compare
BPHYT_RS12615 -4.9 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS33875 -4.9 -7.7 tryptophan synthase subunit alpha compare
BPHYT_RS14915 -4.8 -9.4 phosphoserine aminotransferase compare
BPHYT_RS18320 -4.7 -3.2 orotate phosphoribosyltransferase compare
BPHYT_RS14050 -4.7 -5.0 UDP pyrophosphate phosphatase compare
BPHYT_RS12725 -4.6 -13.8 regulator compare
BPHYT_RS17675 -4.5 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04955 -4.5 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS17265 -4.4 -1.3 cell division protein compare
BPHYT_RS02590 -4.4 -8.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02690 -4.4 -13.5 protoheme IX farnesyltransferase compare
BPHYT_RS12530 -4.4 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS35885 -4.4 -3.5 hypothetical protein compare
BPHYT_RS14855 -4.4 -2.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16270 -4.4 -4.2 phosphoglycerate kinase compare
BPHYT_RS17945 -4.3 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS33835 -4.3 -9.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17715 -4.1 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17885 -4.1 -3.9 3-dehydroquinate synthase compare
BPHYT_RS04335 -3.8 -1.9 membrane protein compare
BPHYT_RS33840 -3.8 -2.6 amidophosphoribosyltransferase compare
BPHYT_RS02525 -3.8 -6.3 membrane protein compare
BPHYT_RS01595 -3.8 -9.6 homoserine O-acetyltransferase compare
BPHYT_RS06975 -3.7 -2.1 glutamate racemase compare
BPHYT_RS06530 -3.7 -1.4 membrane protein compare
BPHYT_RS14865 -3.5 -1.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03135 -3.5 -8.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02685 -3.5 -9.9 cytochrome C oxidase subunit I compare
BPHYT_RS22190 -3.5 -2.5 nucleoid-structuring protein H-NS compare
BPHYT_RS17890 -3.5 -1.7 shikimate kinase compare
BPHYT_RS17700 -3.5 -5.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS18760 -3.4 -2.2 flagellar biosynthesis protein FliT compare
BPHYT_RS36220 -3.3 -1.0 hypothetical protein compare
BPHYT_RS11390 -3.3 -10.2 penicillin-binding protein 1A compare
BPHYT_RS17380 -3.3 -10.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS06075 -3.3 -7.4 hypothetical protein compare
BPHYT_RS33920 -3.3 -4.9 type II citrate synthase compare
BPHYT_RS34780 -3.2 -4.7 phytoene synthase compare
BPHYT_RS12055 -3.2 -19.4 phosphoenolpyruvate synthase compare
BPHYT_RS17520 -3.2 -4.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17405 -3.2 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS17765 -3.2 -8.2 toluene ABC transporter ATP-binding protein compare
BPHYT_RS02570 -3.1 -5.2 phosphocarrier protein HPr compare
BPHYT_RS02640 -3.1 -15.4 cytochrome C oxidase compare
BPHYT_RS13245 -3.0 -5.2 hypothetical protein compare
BPHYT_RS33645 -3.0 -2.8 homoserine kinase compare
BPHYT_RS02665 -3.0 -15.4 MFS transporter compare
BPHYT_RS16905 -3.0 -4.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12150 -3.0 -13.2 PII uridylyl-transferase compare
BPHYT_RS09330 -3.0 -11.4 phytoene synthase compare
BPHYT_RS04965 -3.0 -6.6 ATP-binding protein compare
BPHYT_RS17395 -2.9 -2.2 anthranilate synthase subunit II compare
BPHYT_RS16345 -2.9 -3.4 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06600 -2.9 -1.7 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS10100 -2.9 -5.2 dihydroxy-acid dehydratase compare
BPHYT_RS06065 -2.9 -10.1 cytochrome C compare
BPHYT_RS33580 -2.9 -3.7 geranyltranstransferase compare
BPHYT_RS14895 -2.8 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS16735 -2.8 -7.9 phosphogluconate dehydratase compare
BPHYT_RS02860 -2.8 -0.8 membrane protein compare
BPHYT_RS13645 -2.8 -15.9 threonine--tRNA ligase compare
BPHYT_RS08945 -2.8 -11.2 hypothetical protein compare
BPHYT_RS18255 -2.7 -2.9 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS14275 -2.7 -2.2 hypothetical protein compare
BPHYT_RS17400 -2.7 -8.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS09500 -2.7 -5.5 glucose-6-phosphate isomerase compare
BPHYT_RS16340 -2.7 -1.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06070 -2.6 -9.7 cytochrome C compare
BPHYT_RS02955 -2.6 -8.1 formyltetrahydrofolate deformylase compare
BPHYT_RS08125 -2.5 -10.0 ATPase compare
BPHYT_RS33915 -2.5 -6.4 isopropylmalate isomerase compare
BPHYT_RS01505 -2.5 -2.9 7-cyano-7-deazaguanine reductase compare
BPHYT_RS15620 -2.5 -3.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17095 -2.5 -2.6 proline--tRNA ligase compare
BPHYT_RS30040 -2.5 -1.4 hypothetical protein compare
BPHYT_RS04080 -2.5 -5.5 chloride channel protein compare
BPHYT_RS06155 -2.4 -7.8 DEAD/DEAH box helicase compare
BPHYT_RS06900 -2.4 -3.8 aspartate aminotransferase compare
BPHYT_RS17390 -2.4 -11.6 anthranilate synthase subunit I compare
BPHYT_RS18705 -2.4 -1.7 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS17745 -2.4 -5.5 toluene tolerance family protein compare
BPHYT_RS23570 -2.4 -4.4 chemotaxis protein CheY compare
BPHYT_RS06400 -2.4 -5.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS14400 -2.4 -3.3 anti-sigma factor compare
BPHYT_RS09145 -2.3 -9.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS17855 -2.3 -13.1 glutamate synthase compare
BPHYT_RS06345 -2.3 -7.4 sensor histidine kinase compare
BPHYT_RS15415 -2.3 -8.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17760 -2.3 -4.8 ABC transporter permease compare
BPHYT_RS23910 -2.3 -1.8 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS01685 -2.3 -8.1 phytanoyl-CoA dioxygenase compare
BPHYT_RS18250 -2.2 -6.9 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS07705 -2.2 -1.9 arginine succinyltransferase compare
BPHYT_RS33900 -2.2 -9.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS12840 -2.2 -3.2 pyruvate dehydrogenase compare
BPHYT_RS10095 -2.2 -1.9 integrase compare
BPHYT_RS01500 -2.2 -12.7 7-cyano-7-deazaguanine synthase compare
BPHYT_RS01630 -2.1 -2.6 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS14395 -2.1 -6.2 sugar dehydratase compare
BPHYT_RS16180 -2.1 -0.8 TetR family transcriptional regulator compare
BPHYT_RS05010 -2.1 -4.3 RpiR family transcriptional regulator compare
BPHYT_RS14190 -2.1 -2.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16430 -2.1 -13.9 cytochrome C compare
BPHYT_RS03655 -2.1 -1.7 membrane protein compare
BPHYT_RS12465 -2.1 -1.1 inositol monophosphatase compare
BPHYT_RS16435 -2.1 -11.0 alcohol dehydrogenase compare
BPHYT_RS16245 -2.0 -3.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06045 -2.0 -7.8 transaldolase compare
BPHYT_RS05035 -2.0 -5.7 sugar ABC transporter permease compare
BPHYT_RS18260 -2.0 -6.5 phenylacetic acid degradation protein compare
BPHYT_RS02155 -2.0 -5.6 dithiobiotin synthetase compare
BPHYT_RS02610 -2.0 -3.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14755 -2.0 -2.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS28930 -2.0 -1.1 chromosome partitioning protein ParA compare
BPHYT_RS09160 -1.9 -3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02695 -1.9 -6.3 photosynthetic protein synthase I compare
BPHYT_RS16175 -1.9 -1.5 hemolysin D compare
BPHYT_RS06350 -1.9 -1.9 chemotaxis protein CheY compare
BPHYT_RS05905 -1.9 -1.0 hypothetical protein compare
BPHYT_RS15015 -1.9 -1.2 ArsR family transcriptional regulator compare
BPHYT_RS36055 -1.9 -2.2 hypothetical protein compare
BPHYT_RS18970 -1.8 -10.9 chemotaxis protein compare
BPHYT_RS06405 -1.8 -2.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS22420 -1.8 -1.0 membrane protein compare
BPHYT_RS33655 -1.8 -3.7 MarR family transcriptional regulator compare
BPHYT_RS02650 -1.8 -1.5 membrane protein compare
BPHYT_RS28535 -1.8 -1.0 response regulator receiver compare
BPHYT_RS29695 -1.8 -1.7 hypothetical protein compare
BPHYT_RS17100 -1.8 -4.0 RNA pyrophosphohydrolase compare
BPHYT_RS17035 -1.8 -2.0 sugar kinase compare
BPHYT_RS14105 -1.8 -10.2 exopolyphosphatase compare
BPHYT_RS03535 -1.8 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS24500 -1.8 -1.8 histidine kinase compare
BPHYT_RS24315 -1.8 -1.6 phosphoribosyltransferase compare
BPHYT_RS06610 -1.8 -1.1 triosephosphate isomerase compare
BPHYT_RS16815 -1.8 -1.8 ureidoglycolate hydrolase compare
BPHYT_RS16250 -1.8 -1.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS05960 -1.7 -6.2 endoribonuclease L-PSP compare
BPHYT_RS02045 -1.7 -3.5 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS28075 -1.7 -1.1 cytochrome B561 compare
BPHYT_RS12990 -1.7 -1.7 iron transporter compare
BPHYT_RS02635 -1.7 -7.4 membrane protein compare
BPHYT_RS19680 -1.7 -9.9 glutamate--cysteine ligase compare
BPHYT_RS31400 -1.7 -0.9 methyl-accepting chemotaxis protein compare
BPHYT_RS36130 -1.7 -1.2 hypothetical protein compare
BPHYT_RS02130 -1.7 -2.8 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS08245 -1.7 -4.9 anti-sigma factor compare
BPHYT_RS15615 -1.7 -2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS16880 -1.7 -1.0 malic enzyme compare
BPHYT_RS18270 -1.6 -7.4 phenylacetic acid degradation protein compare
BPHYT_RS17755 -1.6 -4.8 ABC transporter substrate-binding protein compare
BPHYT_RS05490 -1.6 -4.0 porin compare
BPHYT_RS10065 -1.6 -1.2 cytochrome C oxidase subunit I compare
BPHYT_RS06410 -1.6 -1.8 transcriptional regulator compare
BPHYT_RS08615 -1.6 -1.2 hypothetical protein compare
BPHYT_RS13885 -1.6 -1.6 myo-inositol 2-dehydrogenase compare
BPHYT_RS07325 -1.6 -0.8 GntR family transcriptional regulator compare
BPHYT_RS02150 -1.6 -2.6 biotin synthase compare
BPHYT_RS22360 -1.6 -2.5 response regulator receiver compare
BPHYT_RS09480 -1.6 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS26310 -1.6 -2.0 ribonuclease R compare
BPHYT_RS18655 -1.6 -3.1 3-oxoacyl-ACP synthase compare
BPHYT_RS30750 -1.6 -1.6 GntR family transcriptional regulator compare
BPHYT_RS02975 -1.6 -1.0 membrane protein compare
BPHYT_RS16210 -1.6 -3.6 peptidase compare
BPHYT_RS03730 -1.6 -2.0 transcriptional repressor NrdR compare
BPHYT_RS02965 -1.5 -2.5 membrane protein compare
BPHYT_RS02680 -1.5 -6.0 cytochrome C oxidase subunit I compare
BPHYT_RS03520 -1.5 -1.6 ATP--cobalamin adenosyltransferase compare
BPHYT_RS33885 -1.5 -11.0 tRNA pseudouridine synthase A compare
BPHYT_RS36275 -1.5 -1.3 hypothetical protein compare
BPHYT_RS16840 -1.5 -1.4 transketolase compare
BPHYT_RS21070 -1.5 -2.5 ferredoxin compare
BPHYT_RS03215 -1.5 -1.6 TetR family transcriptional regulator compare
BPHYT_RS01510 -1.5 -5.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS27180 -1.5 -4.8 GntR family transcriptional regulator compare
BPHYT_RS05730 -1.5 -4.2 hypothetical protein compare
BPHYT_RS25800 -1.5 -1.6 sugar ABC transporter permease compare
BPHYT_RS02675 -1.5 -5.5 hypothetical protein compare
BPHYT_RS19325 -1.5 -1.8 glycine cleavage system H protein compare
BPHYT_RS15305 -1.5 -4.8 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS24925 -1.5 -1.1 cytochrome O ubiquinol oxidase compare
BPHYT_RS06685 -1.5 -1.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS29175 -1.5 -1.4 ABC transporter ATP-binding protein compare
BPHYT_RS23265 -1.5 -3.4 methylcrotonoyl-CoA carboxylase compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days across organisms