Experiment set22IT072 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14050 -10.3 -5.6 UDP pyrophosphate phosphatase compare
BPHYT_RS17690 -7.2 -5.0 imidazole glycerol phosphate synthase compare
BPHYT_RS16835 -7.1 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17680 -6.6 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06555 -6.5 -4.5 ketol-acid reductoisomerase compare
BPHYT_RS33835 -6.5 -6.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS03150 -6.5 -10.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17685 -6.4 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17675 -6.4 -2.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17945 -6.2 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS03135 -5.8 -8.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02690 -5.8 -10.4 protoheme IX farnesyltransferase compare
BPHYT_RS15920 -5.7 -8.8 argininosuccinate synthase compare
BPHYT_RS04955 -5.7 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS16270 -5.7 -5.0 phosphoglycerate kinase compare
BPHYT_RS02590 -5.3 -6.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS12845 -5.2 -16.8 ATPase compare
BPHYT_RS15915 -5.2 -8.6 ornithine carbamoyltransferase compare
BPHYT_RS33875 -5.2 -9.3 tryptophan synthase subunit alpha compare
BPHYT_RS17670 -5.1 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33865 -5.1 -9.2 tryptophan synthase alpha chain compare
BPHYT_RS09500 -5.1 -6.3 glucose-6-phosphate isomerase compare
BPHYT_RS08955 -5.1 -3.5 homoserine dehydrogenase compare
BPHYT_RS12615 -5.0 -1.7 dihydrodipicolinate synthase compare
BPHYT_RS06545 -4.9 -8.4 acetolactate synthase compare
BPHYT_RS18320 -4.7 -3.3 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -4.6 -7.5 phosphoserine aminotransferase compare
BPHYT_RS18255 -4.6 -3.1 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS35885 -4.5 -4.2 hypothetical protein compare
BPHYT_RS17265 -4.4 -1.5 cell division protein compare
BPHYT_RS17405 -4.4 -1.5 indole-3-glycerol phosphate synthase compare
BPHYT_RS17920 -4.4 -1.5 protein CyaY compare
BPHYT_RS14855 -4.4 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS11390 -4.3 -10.6 penicillin-binding protein 1A compare
BPHYT_RS33880 -4.3 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS04080 -4.2 -7.1 chloride channel protein compare
BPHYT_RS33645 -4.0 -2.8 homoserine kinase compare
BPHYT_RS16210 -4.0 -4.3 peptidase compare
BPHYT_RS24500 -4.0 -1.9 histidine kinase compare
BPHYT_RS12150 -3.9 -13.0 PII uridylyl-transferase compare
BPHYT_RS01595 -3.9 -8.7 homoserine O-acetyltransferase compare
BPHYT_RS17700 -3.8 -3.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS13705 -3.8 -5.2 chorismate synthase compare
BPHYT_RS06975 -3.8 -2.5 glutamate racemase compare
BPHYT_RS13605 -3.7 -1.3 tRNA-Pro compare
BPHYT_RS01500 -3.7 -16.9 7-cyano-7-deazaguanine synthase compare
BPHYT_RS14275 -3.7 -2.5 hypothetical protein compare
BPHYT_RS01505 -3.6 -3.6 7-cyano-7-deazaguanine reductase compare
BPHYT_RS12725 -3.6 -16.5 regulator compare
BPHYT_RS06155 -3.6 -6.9 DEAD/DEAH box helicase compare
BPHYT_RS33920 -3.6 -3.5 type II citrate synthase compare
BPHYT_RS17890 -3.6 -2.0 shikimate kinase compare
BPHYT_RS17095 -3.6 -2.4 proline--tRNA ligase compare
BPHYT_RS14865 -3.5 -2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14895 -3.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17715 -3.5 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12530 -3.5 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS02525 -3.5 -7.3 membrane protein compare
BPHYT_RS17520 -3.4 -3.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS18760 -3.4 -2.4 flagellar biosynthesis protein FliT compare
BPHYT_RS33580 -3.4 -3.3 geranyltranstransferase compare
BPHYT_RS09145 -3.4 -9.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS08245 -3.3 -8.2 anti-sigma factor compare
BPHYT_RS12990 -3.3 -2.3 iron transporter compare
BPHYT_RS05010 -3.3 -5.3 RpiR family transcriptional regulator compare
BPHYT_RS06600 -3.3 -2.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS33840 -3.3 -5.0 amidophosphoribosyltransferase compare
BPHYT_RS02570 -3.3 -5.3 phosphocarrier protein HPr compare
BPHYT_RS17855 -3.2 -14.8 glutamate synthase compare
BPHYT_RS02685 -3.2 -8.8 cytochrome C oxidase subunit I compare
BPHYT_RS05155 -3.2 -5.7 acetyltransferase GCN5 compare
BPHYT_RS03655 -3.1 -2.1 membrane protein compare
BPHYT_RS16905 -3.1 -4.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS16735 -3.1 -8.1 phosphogluconate dehydratase compare
BPHYT_RS01485 -3.0 -1.0 histidine kinase compare
BPHYT_RS16245 -3.0 -2.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06045 -3.0 -6.9 transaldolase compare
BPHYT_RS34780 -3.0 -5.2 phytoene synthase compare
BPHYT_RS06610 -3.0 -1.4 triosephosphate isomerase compare
BPHYT_RS15415 -2.9 -9.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04335 -2.9 -2.1 membrane protein compare
BPHYT_RS17760 -2.9 -7.0 ABC transporter permease compare
BPHYT_RS06405 -2.9 -5.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS13645 -2.9 -17.4 threonine--tRNA ligase compare
BPHYT_RS15620 -2.9 -3.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02640 -2.8 -12.8 cytochrome C oxidase compare
BPHYT_RS17885 -2.8 -4.2 3-dehydroquinate synthase compare
BPHYT_RS06900 -2.8 -4.4 aspartate aminotransferase compare
BPHYT_RS14400 -2.8 -3.5 anti-sigma factor compare
BPHYT_RS16340 -2.7 -1.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS02860 -2.7 -0.9 membrane protein compare
BPHYT_RS22190 -2.7 -2.5 nucleoid-structuring protein H-NS compare
BPHYT_RS02665 -2.6 -14.7 MFS transporter compare
BPHYT_RS31910 -2.6 -1.6 hypothetical protein compare
BPHYT_RS33915 -2.6 -6.4 isopropylmalate isomerase compare
BPHYT_RS17525 -2.6 -2.6 glutaredoxin compare
BPHYT_RS01510 -2.6 -7.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS17380 -2.6 -8.2 ribulose-phosphate 3-epimerase compare
BPHYT_RS06070 -2.6 -11.7 cytochrome C compare
BPHYT_RS18250 -2.6 -9.8 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS02650 -2.5 -1.9 membrane protein compare
BPHYT_RS13245 -2.5 -4.4 hypothetical protein compare
BPHYT_RS17765 -2.5 -6.0 toluene ABC transporter ATP-binding protein compare
BPHYT_RS01530 -2.5 -2.8 penicillin-binding protein 2 compare
BPHYT_RS17745 -2.5 -7.2 toluene tolerance family protein compare
BPHYT_RS33900 -2.5 -11.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS04720 -2.5 -4.4 transcriptional regulator compare
BPHYT_RS02955 -2.5 -9.2 formyltetrahydrofolate deformylase compare
BPHYT_RS24315 -2.4 -2.3 phosphoribosyltransferase compare
BPHYT_RS12840 -2.4 -3.5 pyruvate dehydrogenase compare
BPHYT_RS28660 -2.4 -1.6 polyvinylalcohol dehydrogenase compare
BPHYT_RS06530 -2.4 -1.7 membrane protein compare
BPHYT_RS36055 -2.3 -2.7 hypothetical protein compare
BPHYT_RS06065 -2.3 -10.8 cytochrome C compare
BPHYT_RS17395 -2.3 -2.5 anthranilate synthase subunit II compare
BPHYT_RS12055 -2.3 -15.5 phosphoenolpyruvate synthase compare
BPHYT_RS16710 -2.3 -0.7 LysR family transcriptional regulator compare
BPHYT_RS06075 -2.2 -7.9 hypothetical protein compare
BPHYT_RS18655 -2.2 -2.9 3-oxoacyl-ACP synthase compare
BPHYT_RS02610 -2.2 -4.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS23910 -2.2 -1.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS12465 -2.2 -1.3 inositol monophosphatase compare
BPHYT_RS14910 -2.2 -10.9 chorismate mutase compare
BPHYT_RS14190 -2.2 -2.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16435 -2.2 -12.8 alcohol dehydrogenase compare
BPHYT_RS18260 -2.1 -7.4 phenylacetic acid degradation protein compare
BPHYT_RS16430 -2.1 -14.7 cytochrome C compare
BPHYT_RS16345 -2.1 -3.4 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS23270 -2.1 -1.9 enoyl-CoA hydratase compare
BPHYT_RS36220 -2.1 -0.9 hypothetical protein compare
BPHYT_RS17400 -2.1 -7.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS09330 -2.0 -8.4 phytoene synthase compare
BPHYT_RS08945 -2.0 -7.3 hypothetical protein compare
BPHYT_RS14105 -2.0 -10.9 exopolyphosphatase compare
BPHYT_RS02150 -2.0 -2.1 biotin synthase compare
BPHYT_RS02905 -2.0 -14.9 RNA polymerase subunit sigma-54 compare
BPHYT_RS16665 -2.0 -2.5 peroxiredoxin compare
BPHYT_RS09160 -2.0 -2.8 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS13835 -2.0 -1.3 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS14060 -2.0 -2.0 peptidase M23 compare
BPHYT_RS06400 -1.9 -5.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS19680 -1.9 -10.9 glutamate--cysteine ligase compare
BPHYT_RS23570 -1.9 -5.9 chemotaxis protein CheY compare
BPHYT_RS01685 -1.9 -6.7 phytanoyl-CoA dioxygenase compare
BPHYT_RS20095 -1.9 -1.1 transcriptional regulator compare
BPHYT_RS18270 -1.9 -6.1 phenylacetic acid degradation protein compare
BPHYT_RS11635 -1.9 -1.4 RNA polymerase subunit sigma-24 compare
BPHYT_RS17100 -1.8 -3.8 RNA pyrophosphohydrolase compare
BPHYT_RS08125 -1.8 -8.9 ATPase compare
BPHYT_RS14270 -1.8 -6.8 electron transporter compare
BPHYT_RS04965 -1.8 -7.7 ATP-binding protein compare
BPHYT_RS25980 -1.8 -1.3 urea carboxylase compare
BPHYT_RS18970 -1.8 -10.6 chemotaxis protein compare
BPHYT_RS08995 -1.7 -1.8 hypothetical protein compare
BPHYT_RS15305 -1.7 -6.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS26685 -1.7 -1.1 precorrin-8X methylmutase compare
BPHYT_RS02680 -1.7 -6.9 cytochrome C oxidase subunit I compare
BPHYT_RS06190 -1.7 -2.2 heptosyltransferase compare
BPHYT_RS27370 -1.7 -2.4 CoA transferase compare
BPHYT_RS23275 -1.7 -3.3 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS05960 -1.7 -3.9 endoribonuclease L-PSP compare
BPHYT_RS33905 -1.7 -1.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS02045 -1.6 -3.2 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS32240 -1.6 -1.8 chromosome replication initiation inhibitor protein compare
BPHYT_RS06410 -1.6 -2.4 transcriptional regulator compare
BPHYT_RS02160 -1.6 -4.2 8-amino-7-oxononanoate synthase compare
BPHYT_RS24285 -1.6 -1.6 TetR family transcriptional regulator compare
BPHYT_RS02560 -1.6 -7.0 glutathione synthetase compare
BPHYT_RS17390 -1.6 -9.1 anthranilate synthase subunit I compare
BPHYT_RS17035 -1.6 -2.0 sugar kinase compare
BPHYT_RS12940 -1.6 -6.0 signal transduction histidine kinase compare
BPHYT_RS02165 -1.6 -6.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS06350 -1.6 -1.8 chemotaxis protein CheY compare
BPHYT_RS05040 -1.6 -5.6 sugar ABC transporter ATPase compare
BPHYT_RS02975 -1.6 -1.0 membrane protein compare
BPHYT_RS02575 -1.6 -6.9 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS17755 -1.6 -5.4 ABC transporter substrate-binding protein compare
BPHYT_RS09620 -1.6 -2.6 aminodeoxychorismate lyase compare
BPHYT_RS02885 -1.5 -8.5 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS03400 -1.5 -0.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS32155 -1.5 -3.7 type IV secretion system protein VirB11 compare
BPHYT_RS02815 -1.5 -3.0 methyltransferase compare
BPHYT_RS29520 -1.5 -1.1 hypothetical protein compare
BPHYT_RS30750 -1.5 -1.9 GntR family transcriptional regulator compare
BPHYT_RS03110 -1.5 -2.3 MarR family transcriptional regulator compare
BPHYT_RS12815 -1.5 -5.9 IclR family transcriptional regulator compare
BPHYT_RS14280 -1.5 -4.2 membrane protein compare
BPHYT_RS06375 -1.5 -4.0 ribonuclease compare
BPHYT_RS33885 -1.5 -10.4 tRNA pseudouridine synthase A compare
BPHYT_RS02130 -1.5 -2.3 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS20440 -1.5 -1.4 IclR family transcriptional regulator compare
BPHYT_RS34810 -1.5 -3.2 RND transporter compare
BPHYT_RS02155 -1.5 -3.8 dithiobiotin synthetase compare
BPHYT_RS28485 -1.5 -1.0 GntR family transcriptional regulator compare
BPHYT_RS02635 -1.5 -6.9 membrane protein compare
BPHYT_RS18705 -1.5 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS09515 -1.5 -1.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS30210 -1.4 -2.8 GCN5 family acetyltransferase compare
BPHYT_RS27455 -1.4 -1.5 rod shape-determining protein MreB compare
BPHYT_RS03215 -1.4 -2.1 TetR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days across organisms