Experiment set22IT070 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14050 -7.5 -4.5 UDP pyrophosphate phosphatase compare
BPHYT_RS33875 -6.7 -4.6 tryptophan synthase subunit alpha compare
BPHYT_RS17690 -6.2 -8.5 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -6.1 -4.2 ketol-acid reductoisomerase compare
BPHYT_RS17670 -5.7 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS03150 -5.6 -11.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS06545 -5.5 -5.4 acetolactate synthase compare
BPHYT_RS17685 -5.4 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33865 -5.4 -5.2 tryptophan synthase alpha chain compare
BPHYT_RS16270 -5.2 -4.2 phosphoglycerate kinase compare
BPHYT_RS33835 -5.1 -7.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33880 -5.1 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17680 -5.0 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS14915 -4.9 -8.2 phosphoserine aminotransferase compare
BPHYT_RS15920 -4.8 -8.7 argininosuccinate synthase compare
BPHYT_RS08955 -4.7 -3.2 homoserine dehydrogenase compare
BPHYT_RS12615 -4.7 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS17715 -4.3 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS18320 -4.3 -3.0 orotate phosphoribosyltransferase compare
BPHYT_RS12845 -4.2 -14.4 ATPase compare
BPHYT_RS17405 -4.1 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS17885 -4.0 -2.7 3-dehydroquinate synthase compare
BPHYT_RS17675 -4.0 -2.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS28930 -3.9 -1.2 chromosome partitioning protein ParA compare
BPHYT_RS22940 -3.8 -2.1 pilus assembly protein TadE compare
BPHYT_RS17395 -3.7 -2.0 anthranilate synthase subunit II compare
BPHYT_RS16835 -3.6 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS12530 -3.6 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS13705 -3.6 -4.5 chorismate synthase compare
BPHYT_RS15915 -3.6 -8.6 ornithine carbamoyltransferase compare
BPHYT_RS04335 -3.5 -1.9 membrane protein compare
BPHYT_RS16905 -3.5 -3.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06975 -3.4 -2.1 glutamate racemase compare
BPHYT_RS02690 -3.4 -10.0 protoheme IX farnesyltransferase compare
BPHYT_RS03875 -3.3 -3.4 dehydrogenase compare
BPHYT_RS02590 -3.3 -7.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14865 -3.3 -1.7 UDP-glucose 6-dehydrogenase compare
BPHYT_RS33645 -3.2 -3.1 homoserine kinase compare
BPHYT_RS17095 -3.2 -2.2 proline--tRNA ligase compare
BPHYT_RS17890 -3.2 -1.6 shikimate kinase compare
BPHYT_RS34295 -3.2 -1.0 fimbrial protein compare
BPHYT_RS12725 -3.2 -11.0 regulator compare
BPHYT_RS17700 -3.1 -4.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS23270 -3.1 -1.3 enoyl-CoA hydratase compare
BPHYT_RS33840 -3.0 -4.5 amidophosphoribosyltransferase compare
BPHYT_RS34780 -2.9 -4.0 phytoene synthase compare
BPHYT_RS01595 -2.9 -6.4 homoserine O-acetyltransferase compare
BPHYT_RS17520 -2.9 -2.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17945 -2.9 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS14895 -2.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17265 -2.7 -1.2 cell division protein compare
BPHYT_RS24285 -2.7 -1.1 TetR family transcriptional regulator compare
BPHYT_RS02955 -2.7 -7.4 formyltetrahydrofolate deformylase compare
BPHYT_RS17400 -2.7 -5.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS22190 -2.6 -2.3 nucleoid-structuring protein H-NS compare
BPHYT_RS22265 -2.6 -1.1 hypothetical protein compare
BPHYT_RS02525 -2.6 -6.3 membrane protein compare
BPHYT_RS09160 -2.6 -4.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS13245 -2.6 -4.1 hypothetical protein compare
BPHYT_RS06900 -2.5 -4.5 aspartate aminotransferase compare
BPHYT_RS02860 -2.5 -0.8 membrane protein compare
BPHYT_RS14855 -2.5 -1.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS11390 -2.5 -8.7 penicillin-binding protein 1A compare
BPHYT_RS26965 -2.5 -1.3 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS17390 -2.4 -12.7 anthranilate synthase subunit I compare
BPHYT_RS09315 -2.4 -0.7 chemotaxis protein CheY compare
BPHYT_RS06350 -2.4 -1.8 chemotaxis protein CheY compare
BPHYT_RS18255 -2.4 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS01505 -2.4 -2.5 7-cyano-7-deazaguanine reductase compare
BPHYT_RS11040 -2.3 -1.2 GntR family transcriptional regulator compare
BPHYT_RS06405 -2.3 -3.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS34035 -2.3 -2.2 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS03215 -2.3 -2.2 TetR family transcriptional regulator compare
BPHYT_RS20665 -2.3 -1.2 LysR family transcriptional regulator compare
BPHYT_RS04080 -2.3 -4.4 chloride channel protein compare
BPHYT_RS17855 -2.3 -9.5 glutamate synthase compare
BPHYT_RS36275 -2.3 -1.6 hypothetical protein compare
BPHYT_RS22360 -2.2 -2.4 response regulator receiver compare
BPHYT_RS16245 -2.1 -2.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS13605 -2.1 -0.9 tRNA-Pro compare
BPHYT_RS16435 -2.1 -11.9 alcohol dehydrogenase compare
BPHYT_RS12055 -2.1 -13.5 phosphoenolpyruvate synthase compare
BPHYT_RS11400 -2.0 -2.1 hypothetical protein compare
BPHYT_RS15415 -2.0 -7.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33900 -2.0 -9.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS05035 -2.0 -4.1 sugar ABC transporter permease compare
BPHYT_RS02640 -2.0 -11.3 cytochrome C oxidase compare
BPHYT_RS33580 -1.9 -3.6 geranyltranstransferase compare
BPHYT_RS10100 -1.9 -3.7 dihydroxy-acid dehydratase compare
BPHYT_RS10095 -1.9 -1.6 integrase compare
BPHYT_RS17760 -1.9 -3.5 ABC transporter permease compare
BPHYT_RS09500 -1.9 -3.4 glucose-6-phosphate isomerase compare
BPHYT_RS12465 -1.9 -1.1 inositol monophosphatase compare
BPHYT_RS27370 -1.9 -1.9 CoA transferase compare
BPHYT_RS18910 -1.9 -1.1 FlgN compare
BPHYT_RS03655 -1.9 -1.1 membrane protein compare
BPHYT_RS02665 -1.9 -9.0 MFS transporter compare
BPHYT_RS33920 -1.9 -4.6 type II citrate synthase compare
BPHYT_RS14190 -1.8 -2.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS29250 -1.8 -2.0 dihydrodipicolinate synthase compare
BPHYT_RS03015 -1.8 -0.8 aldolase compare
BPHYT_RS06065 -1.8 -6.6 cytochrome C compare
BPHYT_RS33915 -1.8 -4.7 isopropylmalate isomerase compare
BPHYT_RS11555 -1.8 -2.1 allantoinase compare
BPHYT_RS02695 -1.8 -4.6 photosynthetic protein synthase I compare
BPHYT_RS20590 -1.8 -1.6 methionine sulfoxide reductase A compare
BPHYT_RS06685 -1.8 -1.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS05010 -1.8 -2.8 RpiR family transcriptional regulator compare
BPHYT_RS35885 -1.8 -2.4 hypothetical protein compare
BPHYT_RS08125 -1.8 -8.0 ATPase compare
BPHYT_RS28255 -1.8 -1.2 hypothetical protein compare
BPHYT_RS09145 -1.8 -7.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS07515 -1.8 -2.0 photosystem reaction center subunit H compare
BPHYT_RS33610 -1.7 -1.1 DNA polymerase I compare
BPHYT_RS33655 -1.7 -3.7 MarR family transcriptional regulator compare
BPHYT_RS16735 -1.7 -5.1 phosphogluconate dehydratase compare
BPHYT_RS16430 -1.7 -11.0 cytochrome C compare
BPHYT_RS18260 -1.7 -6.7 phenylacetic acid degradation protein compare
BPHYT_RS32525 -1.7 -1.2 hypothetical protein compare
BPHYT_RS05960 -1.7 -3.5 endoribonuclease L-PSP compare
BPHYT_RS17525 -1.7 -1.7 glutaredoxin compare
BPHYT_RS06070 -1.7 -7.2 cytochrome C compare
BPHYT_RS16340 -1.7 -2.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS28535 -1.7 -0.9 response regulator receiver compare
BPHYT_RS12855 -1.7 -1.8 hypothetical protein compare
BPHYT_RS11170 -1.6 -1.1 hypothetical protein compare
BPHYT_RS23940 -1.6 -1.1 GntR family transcriptional regulator compare
BPHYT_RS06045 -1.6 -5.1 transaldolase compare
BPHYT_RS05490 -1.6 -4.1 porin compare
BPHYT_RS29915 -1.6 -1.6 GntR family transcriptional regulator compare
BPHYT_RS14270 -1.6 -5.7 electron transporter compare
BPHYT_RS14185 -1.6 -1.3 transcription elongation factor GreA compare
BPHYT_RS24500 -1.6 -1.4 histidine kinase compare
BPHYT_RS25955 -1.6 -1.5 transcriptional regulator compare
BPHYT_RS01500 -1.6 -8.9 7-cyano-7-deazaguanine synthase compare
BPHYT_RS17640 -1.6 -1.8 2-alkenal reductase compare
BPHYT_RS03135 -1.6 -5.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS04955 -1.6 -1.4 methionyl-tRNA synthetase compare
BPHYT_RS13320 -1.6 -0.9 allantoate amidohydrolase compare
BPHYT_RS12150 -1.6 -7.8 PII uridylyl-transferase compare
BPHYT_RS05155 -1.6 -2.6 acetyltransferase GCN5 compare
BPHYT_RS16840 -1.5 -1.0 transketolase compare
BPHYT_RS06550 -1.5 -1.4 acetolactate synthase compare
BPHYT_RS06155 -1.5 -4.0 DEAD/DEAH box helicase compare
BPHYT_RS18760 -1.5 -1.4 flagellar biosynthesis protein FliT compare
BPHYT_RS06075 -1.5 -5.1 hypothetical protein compare
BPHYT_RS10400 -1.5 -0.9 taurine ABC transporter permease compare
BPHYT_RS19270 -1.5 -2.7 hypothetical protein compare
BPHYT_RS24315 -1.5 -1.3 phosphoribosyltransferase compare
BPHYT_RS28470 -1.5 -1.1 hypothetical protein compare
BPHYT_RS31050 -1.5 -0.8 epimerase compare
BPHYT_RS05620 -1.5 -0.9 CsbD family protein compare
BPHYT_RS01950 -1.5 -2.7 phosphoheptose isomerase compare
BPHYT_RS02150 -1.5 -1.9 biotin synthase compare
BPHYT_RS00770 -1.5 -0.8 conjugal transfer protein TraC compare
BPHYT_RS20440 -1.5 -1.1 IclR family transcriptional regulator compare
BPHYT_RS02100 -1.5 -1.2 AsnC family transcriptional regulator compare
BPHYT_RS23315 -1.5 -1.3 hypothetical protein compare
BPHYT_RS02685 -1.5 -5.0 cytochrome C oxidase subunit I compare
BPHYT_RS08525 -1.5 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS14400 -1.5 -1.9 anti-sigma factor compare
BPHYT_RS02680 -1.5 -6.7 cytochrome C oxidase subunit I compare
BPHYT_RS36055 -1.5 -1.8 hypothetical protein compare
BPHYT_RS05040 -1.5 -3.4 sugar ABC transporter ATPase compare
BPHYT_RS14105 -1.5 -8.5 exopolyphosphatase compare
BPHYT_RS34025 -1.5 -1.5 hypothetical protein compare
BPHYT_RS24170 -1.4 -2.2 gluconolactonase compare
BPHYT_RS14275 -1.4 -1.5 hypothetical protein compare
BPHYT_RS02610 -1.4 -2.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16090 -1.4 -1.2 hypothetical protein compare
BPHYT_RS23770 -1.4 -1.4 GntR family transcriptional regulator compare
BPHYT_RS11635 -1.4 -0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS16880 -1.4 -1.0 malic enzyme compare
BPHYT_RS17765 -1.4 -3.3 toluene ABC transporter ATP-binding protein compare
BPHYT_RS02755 -1.4 -0.9 cyd operon protein YbgT compare
BPHYT_RS10645 -1.4 -1.0 cyanate hydratase compare
BPHYT_RS07140 -1.4 -1.2 hypothetical protein compare
BPHYT_RS16345 -1.4 -2.4 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06410 -1.4 -1.9 transcriptional regulator compare
BPHYT_RS30185 -1.4 -1.8 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS17745 -1.4 -3.7 toluene tolerance family protein compare
BPHYT_RS22815 -1.4 -1.0 TonB-denpendent receptor compare
BPHYT_RS14945 -1.4 -2.4 phosphoglycolate phosphatase compare
BPHYT_RS13645 -1.4 -8.5 threonine--tRNA ligase compare
BPHYT_RS09585 -1.4 -1.0 hypothetical protein compare
BPHYT_RS26685 -1.3 -0.8 precorrin-8X methylmutase compare
BPHYT_RS36150 -1.3 -2.1 hypothetical protein compare
BPHYT_RS20095 -1.3 -0.7 transcriptional regulator compare
BPHYT_RS12840 -1.3 -2.3 pyruvate dehydrogenase compare
BPHYT_RS02165 -1.3 -3.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS23910 -1.3 -1.4 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS30810 -1.3 -1.3 transcriptional regulator compare
BPHYT_RS02155 -1.3 -3.4 dithiobiotin synthetase compare
BPHYT_RS06325 -1.3 -3.3 ATPase compare
BPHYT_RS04965 -1.3 -3.5 ATP-binding protein compare
BPHYT_RS16020 -1.3 -1.0 AsnC family transcriptional regulator compare
BPHYT_RS10695 -1.3 -1.1 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS02635 -1.3 -7.2 membrane protein compare
BPHYT_RS03730 -1.3 -1.6 transcriptional repressor NrdR compare
BPHYT_RS08945 -1.3 -3.3 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days across organisms