Experiment set22IT069 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14050 -7.1 -5.3 UDP pyrophosphate phosphatase compare
BPHYT_RS17690 -6.6 -6.4 imidazole glycerol phosphate synthase compare
BPHYT_RS17685 -6.3 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS06555 -6.2 -4.3 ketol-acid reductoisomerase compare
BPHYT_RS17680 -6.2 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17675 -6.1 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17670 -5.8 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16735 -4.9 -5.9 phosphogluconate dehydratase compare
BPHYT_RS33865 -4.8 -8.7 tryptophan synthase alpha chain compare
BPHYT_RS08955 -4.8 -3.3 homoserine dehydrogenase compare
BPHYT_RS33875 -4.7 -8.3 tryptophan synthase subunit alpha compare
BPHYT_RS12615 -4.7 -1.6 dihydrodipicolinate synthase compare
BPHYT_RS06545 -4.6 -9.2 acetolactate synthase compare
BPHYT_RS03150 -4.5 -11.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS12845 -4.5 -14.1 ATPase compare
BPHYT_RS33835 -4.4 -9.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS18320 -4.4 -3.0 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -4.3 -5.8 phosphoserine aminotransferase compare
BPHYT_RS14855 -4.1 -2.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14895 -4.1 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15920 -4.1 -9.8 argininosuccinate synthase compare
BPHYT_RS11390 -3.8 -8.8 penicillin-binding protein 1A compare
BPHYT_RS33645 -3.8 -2.6 homoserine kinase compare
BPHYT_RS17700 -3.8 -3.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17715 -3.7 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS02590 -3.7 -8.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17885 -3.6 -3.5 3-dehydroquinate synthase compare
BPHYT_RS13605 -3.6 -1.2 tRNA-Pro compare
BPHYT_RS01595 -3.6 -9.5 homoserine O-acetyltransferase compare
BPHYT_RS04335 -3.5 -2.0 membrane protein compare
BPHYT_RS06975 -3.5 -2.3 glutamate racemase compare
BPHYT_RS16835 -3.5 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14865 -3.3 -1.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS23270 -3.3 -1.5 enoyl-CoA hydratase compare
BPHYT_RS33840 -3.3 -3.9 amidophosphoribosyltransferase compare
BPHYT_RS12530 -3.3 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS15915 -3.2 -8.3 ornithine carbamoyltransferase compare
BPHYT_RS09500 -3.2 -6.6 glucose-6-phosphate isomerase compare
BPHYT_RS27370 -3.2 -2.8 CoA transferase compare
BPHYT_RS16905 -3.1 -4.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS10095 -3.1 -2.0 integrase compare
BPHYT_RS08235 -3.0 -1.0 nucleoprotein, Hfg, host factor I compare
BPHYT_RS33765 -2.9 -1.3 membrane protein compare
BPHYT_RS02955 -2.9 -7.7 formyltetrahydrofolate deformylase compare
BPHYT_RS01485 -2.8 -0.9 histidine kinase compare
BPHYT_RS08340 -2.8 -0.9 chemotaxis protein CheY compare
BPHYT_RS33880 -2.8 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS07515 -2.7 -2.4 photosystem reaction center subunit H compare
BPHYT_RS18910 -2.7 -1.5 FlgN compare
BPHYT_RS13705 -2.7 -3.5 chorismate synthase compare
BPHYT_RS33920 -2.7 -4.8 type II citrate synthase compare
BPHYT_RS28360 -2.7 -1.7 carboxymuconolactone decarboxylase compare
BPHYT_RS17405 -2.7 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS02690 -2.7 -9.2 protoheme IX farnesyltransferase compare
BPHYT_RS17855 -2.7 -11.7 glutamate synthase compare
BPHYT_RS01505 -2.6 -2.5 7-cyano-7-deazaguanine reductase compare
BPHYT_RS33900 -2.6 -7.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS05705 -2.5 -1.2 hypothetical protein compare
BPHYT_RS02860 -2.5 -0.8 membrane protein compare
BPHYT_RS11540 -2.5 -2.5 ureidoglycolate hydrolase compare
BPHYT_RS12725 -2.5 -9.6 regulator compare
BPHYT_RS16210 -2.4 -2.5 peptidase compare
BPHYT_RS23910 -2.4 -1.6 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS24500 -2.4 -1.8 histidine kinase compare
BPHYT_RS04720 -2.4 -6.9 transcriptional regulator compare
BPHYT_RS22355 -2.3 -2.4 HAD family hydrolase compare
BPHYT_RS09145 -2.3 -9.6 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS16270 -2.2 -2.0 phosphoglycerate kinase compare
BPHYT_RS06410 -2.2 -2.3 transcriptional regulator compare
BPHYT_RS16880 -2.2 -1.2 malic enzyme compare
BPHYT_RS09480 -2.2 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS34780 -2.2 -3.5 phytoene synthase compare
BPHYT_RS12150 -2.2 -10.4 PII uridylyl-transferase compare
BPHYT_RS06045 -2.2 -5.7 transaldolase compare
BPHYT_RS34035 -2.1 -2.0 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS06710 -2.1 -1.2 hypothetical protein compare
BPHYT_RS18255 -2.1 -2.2 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS28660 -2.1 -1.3 polyvinylalcohol dehydrogenase compare
BPHYT_RS02595 -2.1 -1.0 sulfurtransferase compare
BPHYT_RS33905 -2.1 -1.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS22190 -2.1 -2.4 nucleoid-structuring protein H-NS compare
BPHYT_RS13320 -2.1 -1.2 allantoate amidohydrolase compare
BPHYT_RS16710 -2.1 -0.7 LysR family transcriptional regulator compare
BPHYT_RS27250 -2.1 -2.6 NAD-dependent epimerase/dehydratase compare
BPHYT_RS06900 -2.1 -5.1 aspartate aminotransferase compare
BPHYT_RS16245 -2.1 -2.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS23230 -2.1 -0.9 histidine kinase compare
BPHYT_RS06195 -2.1 -2.1 membrane protein compare
BPHYT_RS22835 -2.1 -1.3 flagellar motor protein MotA compare
BPHYT_RS06350 -2.0 -2.1 chemotaxis protein CheY compare
BPHYT_RS12510 -2.0 -1.9 RNA-binding protein compare
BPHYT_RS04955 -2.0 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS02165 -2.0 -5.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS30825 -2.0 -2.2 extradiol dioxygenase compare
BPHYT_RS10995 -2.0 -2.0 GntR family transcriptional regulator compare
BPHYT_RS36220 -2.0 -0.9 hypothetical protein compare
BPHYT_RS36275 -2.0 -1.6 hypothetical protein compare
BPHYT_RS14190 -2.0 -1.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33580 -2.0 -4.0 geranyltranstransferase compare
BPHYT_RS24665 -1.9 -1.4 ABC transporter permease compare
BPHYT_RS00815 -1.9 -1.1 hypothetical protein compare
BPHYT_RS32290 -1.9 -3.1 hypothetical protein compare
BPHYT_RS17400 -1.9 -4.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS02525 -1.9 -5.7 membrane protein compare
BPHYT_RS05010 -1.9 -3.6 RpiR family transcriptional regulator compare
BPHYT_RS10650 -1.9 -1.4 membrane protein compare
BPHYT_RS23155 -1.9 -1.4 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS23570 -1.9 -4.1 chemotaxis protein CheY compare
BPHYT_RS07325 -1.9 -0.8 GntR family transcriptional regulator compare
BPHYT_RS06685 -1.9 -1.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS09160 -1.9 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS05030 -1.9 -1.7 sugar ABC transporter permease compare
BPHYT_RS06405 -1.9 -2.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS17520 -1.9 -3.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS24925 -1.8 -1.2 cytochrome O ubiquinol oxidase compare
BPHYT_RS01500 -1.8 -10.3 7-cyano-7-deazaguanine synthase compare
BPHYT_RS02610 -1.8 -2.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14105 -1.8 -10.1 exopolyphosphatase compare
BPHYT_RS07935 -1.8 -1.9 Rrf2 family transcriptional regulator compare
BPHYT_RS07570 -1.8 -1.0 hypothetical protein compare
BPHYT_RS16340 -1.8 -2.6 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS31515 -1.8 -2.0 agmatinase compare
BPHYT_RS02765 -1.8 -1.0 cytochrome BD oxidase subunit I compare
BPHYT_RS33060 -1.8 -2.3 hypothetical protein compare
BPHYT_RS02665 -1.7 -8.6 MFS transporter compare
BPHYT_RS22940 -1.7 -1.4 pilus assembly protein TadE compare
BPHYT_RS08190 -1.7 -1.3 type II secretion system protein compare
BPHYT_RS09355 -1.7 -1.5 LysR family transcriptional regulator compare
BPHYT_RS33915 -1.7 -4.5 isopropylmalate isomerase compare
BPHYT_RS05155 -1.7 -3.5 acetyltransferase GCN5 compare
BPHYT_RS33850 -1.7 -1.3 sporulation protein compare
BPHYT_RS36055 -1.7 -2.1 hypothetical protein compare
BPHYT_RS00295 -1.7 -1.7 hypothetical protein compare
BPHYT_RS06155 -1.7 -5.1 DEAD/DEAH box helicase compare
BPHYT_RS04080 -1.7 -3.9 chloride channel protein compare
BPHYT_RS01170 -1.7 -2.3 hypothetical protein compare
BPHYT_RS30350 -1.7 -2.9 LysR family transcriptional regulator compare
BPHYT_RS14900 -1.7 -2.0 prephenate dehydrogenase compare
BPHYT_RS17760 -1.6 -3.9 ABC transporter permease compare
BPHYT_RS12465 -1.6 -1.4 inositol monophosphatase compare
BPHYT_RS04285 -1.6 -1.3 rhamnosyltransferase compare
BPHYT_RS13645 -1.6 -9.8 threonine--tRNA ligase compare
BPHYT_RS17945 -1.6 -1.8 cytochrome C biogenesis protein compare
BPHYT_RS02695 -1.6 -3.8 photosynthetic protein synthase I compare
BPHYT_RS27495 -1.6 -0.9 hypothetical protein compare
BPHYT_RS27295 -1.6 -1.3 hypothetical protein compare
BPHYT_RS01685 -1.6 -6.1 phytanoyl-CoA dioxygenase compare
BPHYT_RS14500 -1.6 -2.4 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS21385 -1.6 -1.6 short-chain dehydrogenase compare
BPHYT_RS21975 -1.6 -2.4 2-dehydropantoate 2-reductase compare
BPHYT_RS18710 -1.6 -1.4 membrane protein compare
BPHYT_RS17265 -1.6 -1.0 cell division protein compare
BPHYT_RS02560 -1.5 -5.8 glutathione synthetase compare
BPHYT_RS05035 -1.5 -4.0 sugar ABC transporter permease compare
BPHYT_RS17530 -1.5 -3.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS29620 -1.5 -0.8 hypothetical protein compare
BPHYT_RS16430 -1.5 -10.7 cytochrome C compare
BPHYT_RS27180 -1.5 -4.0 GntR family transcriptional regulator compare
BPHYT_RS02640 -1.5 -8.0 cytochrome C oxidase compare
BPHYT_RS02540 -1.5 -1.1 hypothetical protein compare
BPHYT_RS03135 -1.5 -5.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS16435 -1.5 -8.3 alcohol dehydrogenase compare
BPHYT_RS21625 -1.5 -0.8 LysR family transcriptional regulator compare
BPHYT_RS15415 -1.5 -6.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS29065 -1.5 -1.8 hypothetical protein compare
BPHYT_RS36470 -1.5 -1.6 hypothetical protein compare
BPHYT_RS18705 -1.5 -1.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS12990 -1.5 -1.6 iron transporter compare
BPHYT_RS14735 -1.5 -0.9 hypothetical protein compare
BPHYT_RS10355 -1.5 -1.9 nitrate reductase compare
BPHYT_RS26685 -1.5 -0.9 precorrin-8X methylmutase compare
BPHYT_RS12055 -1.5 -8.6 phosphoenolpyruvate synthase compare
BPHYT_RS32240 -1.5 -1.3 chromosome replication initiation inhibitor protein compare
BPHYT_RS29085 -1.5 -1.5 LysR family transcriptional regulator compare
BPHYT_RS06190 -1.5 -2.0 heptosyltransferase compare
BPHYT_RS28025 -1.5 -1.3 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS25845 -1.4 -0.9 RND transporter MFP subunit compare
BPHYT_RS06540 -1.4 -5.0 RNA polymerase sigma70 factor compare
BPHYT_RS11635 -1.4 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS11810 -1.4 -1.2 LysR family transcriptional regulator compare
BPHYT_RS32525 -1.4 -1.3 hypothetical protein compare
BPHYT_RS19680 -1.4 -7.7 glutamate--cysteine ligase compare
BPHYT_RS02880 -1.4 -0.9 ATP-dependent protease compare
BPHYT_RS03655 -1.4 -0.9 membrane protein compare
BPHYT_RS16345 -1.4 -2.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS27655 -1.4 -1.0 potassium transporter compare
BPHYT_RS01510 -1.4 -4.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS29865 -1.4 -1.4 sugar transferase compare
BPHYT_RS24930 -1.4 -3.0 cytochrome C oxidase subunit III compare
BPHYT_RS24045 -1.4 -2.2 amino acid ABC transporter compare
BPHYT_RS28920 -1.4 -1.3 cellulose synthase compare
BPHYT_RS20715 -1.4 -1.2 peptidase compare
BPHYT_RS21070 -1.4 -2.3 ferredoxin compare
BPHYT_RS25935 -1.4 -1.4 type III secretion protein compare
BPHYT_RS06065 -1.4 -5.8 cytochrome C compare
BPHYT_RS30450 -1.4 -0.7 ABC transporter permease compare
BPHYT_RS22855 -1.3 -2.5 aldehyde-activating protein compare
BPHYT_RS29250 -1.3 -2.0 dihydrodipicolinate synthase compare
BPHYT_RS20170 -1.3 -1.3 sugar transporter compare
BPHYT_RS36250 -1.3 -1.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days across organisms