Experiment set22IT069 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27865 +5.8 2.9 ATPase compare
BPHYT_RS16470 +2.4 11.0 DeoR faimly transcriptional regulator compare
BPHYT_RS09650 +2.1 2.6 hypothetical protein compare
BPHYT_RS23455 +2.0 2.0 phosphorylase compare
BPHYT_RS26390 +1.9 1.2 antibiotic resistance protein compare
BPHYT_RS32880 +1.8 1.4 alanine acetyltransferase compare
BPHYT_RS21650 +1.7 3.1 cobalamin synthesis protein P47K compare
BPHYT_RS05320 +1.6 1.2 beta-lactamase compare
BPHYT_RS35275 +1.6 1.1 acetyltransferase compare
BPHYT_RS16950 +1.6 5.3 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS23460 +1.6 1.4 AraC family transcriptional regulator compare
BPHYT_RS06105 +1.6 2.2 hypothetical protein compare
BPHYT_RS28075 +1.6 2.1 cytochrome B561 compare
BPHYT_RS33125 +1.6 1.7 hypothetical protein compare
BPHYT_RS09385 +1.6 1.6 FAD-dependent oxidoreductase compare
BPHYT_RS34295 +1.5 1.5 fimbrial protein compare
BPHYT_RS26955 +1.5 1.6 succinylglutamate desuccinylase compare
BPHYT_RS20905 +1.5 2.3 hypothetical protein compare
BPHYT_RS04290 +1.4 1.1 glycosyl transferase family 2 compare
BPHYT_RS22265 +1.4 1.4 hypothetical protein compare
BPHYT_RS01455 +1.3 0.8 peptide deformylase compare
BPHYT_RS05330 +1.3 1.6 phosphohydrolase compare
BPHYT_RS32225 +1.3 1.6 hypothetical protein compare
BPHYT_RS29540 +1.3 1.5 aldolase compare
BPHYT_RS03775 +1.3 1.4 peroxidase compare
BPHYT_RS20790 +1.2 1.3 TetR family transcriptional regulator compare
BPHYT_RS23520 +1.2 2.5 peroxidase compare
BPHYT_RS28480 +1.2 1.4 hydroxyglutarate oxidase compare
BPHYT_RS04560 +1.2 1.9 Hcp1 family type VI secretion system effector compare
BPHYT_RS27270 +1.2 2.5 photosystem reaction center subunit H compare
BPHYT_RS26030 +1.2 2.2 cysteine hydrolase compare
BPHYT_RS33460 +1.2 1.5 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS08505 +1.2 3.0 hypothetical protein compare
BPHYT_RS30265 +1.1 1.3 hypothetical protein compare
BPHYT_RS26655 +1.1 2.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
BPHYT_RS13470 +1.1 1.1 arylsulfate sulfotransferase compare
BPHYT_RS26820 +1.1 1.4 LysR family transcriptional regulator compare
BPHYT_RS28830 +1.1 0.7 LysR family transcriptional regulator compare
BPHYT_RS31470 +1.1 2.8 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS16335 +1.1 1.2 membrane protein compare
BPHYT_RS26560 +1.1 1.6 murein hydrolase transporter LrgA compare
BPHYT_RS09565 +1.1 0.8 acetyl-CoA acetyltransferase compare
BPHYT_RS28065 +1.1 1.6 hypothetical protein compare
BPHYT_RS24590 +1.1 1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS30365 +1.1 0.9 beta-lactamase compare
BPHYT_RS18865 +1.1 1.7 flagellar L-ring protein FlgH compare
BPHYT_RS35735 +1.0 1.1 nitroreductase compare
BPHYT_RS19350 +1.0 6.8 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS22425 +1.0 4.5 GntR family transcriptional regulator compare
BPHYT_RS36175 +1.0 2.1 hypothetical protein compare
BPHYT_RS07600 +1.0 1.8 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS08415 +1.0 2.0 hypothetical protein compare
BPHYT_RS36400 +1.0 0.8 hypothetical protein compare
BPHYT_RS21215 +1.0 1.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS29235 +1.0 1.5 cell shape determination protein CcmA compare
BPHYT_RS22295 +1.0 1.2 LysR family transcriptional regulator compare
BPHYT_RS25250 +1.0 1.1 porin compare
BPHYT_RS09870 +1.0 1.8 membrane protein compare
BPHYT_RS22910 +1.0 0.9 hypothetical protein compare
BPHYT_RS09310 +1.0 5.0 sensor histidine kinase compare
BPHYT_RS11825 +0.9 1.0 cytosine deaminase compare
BPHYT_RS23675 +0.9 1.4 lysine transporter LysE compare
BPHYT_RS31130 +0.9 2.2 hypothetical protein compare
BPHYT_RS26490 +0.9 1.0 hypothetical protein compare
BPHYT_RS07705 +0.9 1.3 arginine succinyltransferase compare
BPHYT_RS28115 +0.9 1.9 hypothetical protein compare
BPHYT_RS10505 +0.9 3.6 2-oxoglutarate dehydrogenase E1 compare
BPHYT_RS03090 +0.9 0.9 hypothetical protein compare
BPHYT_RS09885 +0.9 2.4 isomerase compare
BPHYT_RS21905 +0.9 0.8 IclR family transcriptional regulator compare
BPHYT_RS15075 +0.9 1.3 dihydrokaempferol 4-reductase compare
BPHYT_RS22560 +0.9 3.0 flagellar transcriptional regulator FlhD compare
BPHYT_RS12160 +0.9 3.2 peptide deformylase compare
BPHYT_RS31450 +0.9 2.7 hypothetical protein compare
BPHYT_RS36145 +0.9 1.7 hypothetical protein compare
BPHYT_RS26470 +0.9 1.1 MFS transporter compare
BPHYT_RS17640 +0.9 1.8 2-alkenal reductase compare
BPHYT_RS21480 +0.9 2.5 hypothetical protein compare
BPHYT_RS08595 +0.9 1.1 multidrug transporter compare
BPHYT_RS20840 +0.9 1.3 beta-lactamase compare
BPHYT_RS01790 +0.9 6.2 LuxR family transcriptional regulator compare
BPHYT_RS28765 +0.9 2.5 fumarylacetoacetate hydrolase compare
BPHYT_RS14550 +0.9 0.6 tRNA-Asn compare
BPHYT_RS00860 +0.9 2.9 3-ketoacyl-ACP reductase compare
BPHYT_RS13765 +0.9 3.3 LysR family transcriptional regulator compare
BPHYT_RS20845 +0.9 1.2 peroxidase compare
BPHYT_RS05365 +0.9 1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS27490 +0.9 3.3 porin compare
BPHYT_RS11125 +0.9 1.2 alkylhydroperoxidase compare
BPHYT_RS34640 +0.9 1.2 TetR family transcriptional regulator compare
BPHYT_RS10115 +0.9 2.0 hypothetical protein compare
BPHYT_RS36570 +0.8 1.2 histone compare
BPHYT_RS21285 +0.8 2.3 hypothetical protein compare
BPHYT_RS33535 +0.8 6.8 RNA polymerase sigma factor RpoD compare
BPHYT_RS32960 +0.8 2.1 short-chain dehydrogenase compare
BPHYT_RS23600 +0.8 1.6 hypothetical protein compare
BPHYT_RS11795 +0.8 1.0 membrane protein compare
BPHYT_RS20725 +0.8 0.9 histidine kinase compare
BPHYT_RS30020 +0.8 1.2 arsenic transporter compare
BPHYT_RS11100 +0.8 1.5 methyltransferase compare
BPHYT_RS28825 +0.8 2.6 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS14345 +0.8 2.9 beta-hexosaminidase compare
BPHYT_RS09765 +0.8 1.5 G-D-S-L family lipolytic protein compare
BPHYT_RS24050 +0.8 1.6 amino acid ABC transporter compare
BPHYT_RS07060 +0.8 1.5 aldo/keto reductase compare
BPHYT_RS34490 +0.8 0.6 hypothetical protein compare
BPHYT_RS00580 +0.8 2.6 hypothetical protein compare
BPHYT_RS34080 +0.8 0.9 flagellar motor protein MotB compare
BPHYT_RS22420 +0.8 0.8 membrane protein compare
BPHYT_RS23525 +0.8 0.9 hypothetical protein compare
BPHYT_RS28685 +0.8 1.7 GntR family transcriptional regulator compare
BPHYT_RS07340 +0.8 2.5 glyoxalase compare
BPHYT_RS31015 +0.8 3.2 3-deoxy-manno-octulosonate cytidylyltransferase 2 compare
BPHYT_RS13105 +0.8 1.4 LacI family transcription regulator compare
BPHYT_RS16125 +0.8 3.8 Fur family transcriptional regulator compare
BPHYT_RS03050 +0.8 4.1 cytochrome C compare
BPHYT_RS30100 +0.8 1.8 copper oxidase compare
BPHYT_RS16090 +0.8 1.2 hypothetical protein compare
BPHYT_RS03265 +0.8 2.2 hypothetical protein compare
BPHYT_RS10240 +0.8 0.7 translation initiation inhibitor compare
BPHYT_RS06455 +0.8 2.4 potassium-transporting ATPase C chain compare
BPHYT_RS11075 +0.8 1.3 membrane protein compare
BPHYT_RS17050 +0.8 1.2 hypothetical protein compare
BPHYT_RS32055 +0.8 1.1 hypothetical protein compare
BPHYT_RS28245 +0.8 1.3 MFS transporter compare
BPHYT_RS02770 +0.8 1.8 membrane protein compare
BPHYT_RS05895 +0.8 0.6 hypothetical protein compare
BPHYT_RS11775 +0.8 1.2 AraC family transcriptional regulator compare
BPHYT_RS11655 +0.8 1.3 chromosome partitioning protein ParB compare
BPHYT_RS17810 +0.8 2.3 transcriptional regulator compare
BPHYT_RS25780 +0.7 0.5 DeoR faimly transcriptional regulator compare
BPHYT_RS28880 +0.7 1.4 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS00790 +0.7 1.2 conjugal transfer protein TraF compare
BPHYT_RS17830 +0.7 0.7 histidine kinase compare
BPHYT_RS09755 +0.7 0.9 glycosyl transferase family 1 compare
BPHYT_RS10345 +0.7 0.7 flagellar motor protein MotB compare
BPHYT_RS08030 +0.7 2.0 transposase compare
BPHYT_RS33365 +0.7 2.0 PAS sensor protein compare
BPHYT_RS31050 +0.7 0.7 epimerase compare
BPHYT_RS21765 +0.7 1.2 IclR family transcriptional regulator compare
BPHYT_RS03385 +0.7 1.3 DeoR family transcriptional regulator compare
BPHYT_RS31415 +0.7 1.3 amino acid ABC transporter permease compare
BPHYT_RS06285 +0.7 1.3 diguanylate cyclase compare
BPHYT_RS26815 +0.7 2.2 1-aminocyclopropane-1-carboxylate deaminase compare
BPHYT_RS24225 +0.7 2.2 hypothetical protein compare
BPHYT_RS24630 +0.7 1.5 (2Fe-2S)-binding protein compare
BPHYT_RS33245 +0.7 1.6 hypothetical protein compare
BPHYT_RS11930 +0.7 1.3 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS05610 +0.7 4.0 DNA-cytosine methyltransferase compare
BPHYT_RS05570 +0.7 1.5 hypothetical protein compare
BPHYT_RS35230 +0.7 0.6 type 11 methyltransferase compare
BPHYT_RS27125 +0.7 1.5 hypothetical protein compare
BPHYT_RS28595 +0.7 0.8 glyoxalase compare
BPHYT_RS22555 +0.7 2.5 transcriptional regulator compare
BPHYT_RS06290 +0.7 1.6 hypothetical protein compare
BPHYT_RS13810 +0.7 2.0 type VI secretion protein compare
BPHYT_RS28090 +0.7 1.4 ferredoxin compare
BPHYT_RS16180 +0.7 0.6 TetR family transcriptional regulator compare
BPHYT_RS17440 +0.7 1.9 hypothetical protein compare
BPHYT_RS27155 +0.7 1.1 peroxiredoxin compare
BPHYT_RS35835 +0.7 2.2 hypothetical protein compare
BPHYT_RS29110 +0.7 1.3 DNA-directed DNA polymerase compare
BPHYT_RS07925 +0.7 1.3 glutamine amidotransferase compare
BPHYT_RS07255 +0.7 1.8 4-oxalocrotonate decarboxylase compare
BPHYT_RS33050 +0.7 1.7 LuxR family transcriptional regulator compare
BPHYT_RS34605 +0.7 1.3 transcriptional regulator compare
BPHYT_RS35345 +0.7 1.3 decarboxylase UbiD compare
BPHYT_RS34815 +0.7 1.3 ABC transporter compare
BPHYT_RS10945 +0.7 0.8 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS34260 +0.7 1.1 hypothetical protein compare
BPHYT_RS01965 +0.7 0.8 tRNA-Ala compare
BPHYT_RS36230 +0.7 1.6 hypothetical protein compare
BPHYT_RS09995 +0.7 2.1 membrane protein compare
BPHYT_RS25405 +0.7 1.8 CoA-transferase compare
BPHYT_RS05520 +0.7 1.7 transcriptional regulator compare
BPHYT_RS21445 +0.7 1.6 sugar ABC transporter ATP-binding protein compare
BPHYT_RS35675 +0.7 1.3 short-chain dehydrogenase compare
BPHYT_RS23345 +0.7 1.1 nucleotide sugar dehydrogenase compare
BPHYT_RS26540 +0.7 1.0 hypothetical protein compare
BPHYT_RS11220 +0.7 3.2 LacI family transcriptional regulator compare
BPHYT_RS08765 +0.7 0.6 ABC transporter ATP-binding protein compare
BPHYT_RS04665 +0.7 2.5 hypothetical protein compare
BPHYT_RS19355 +0.7 4.7 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS25995 +0.7 1.5 2OG-Fe(II) oxygenase compare
BPHYT_RS31545 +0.7 2.1 membrane protein compare
BPHYT_RS33540 +0.7 3.7 hypothetical protein compare
BPHYT_RS00145 +0.7 1.6 hypothetical protein compare
BPHYT_RS05395 +0.7 0.8 hypothetical protein compare
BPHYT_RS35480 +0.7 0.7 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS02070 +0.7 0.6 hypothetical protein compare
BPHYT_RS17470 +0.7 2.2 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BPHYT_RS04035 +0.7 1.0 transferase compare
BPHYT_RS23605 +0.7 1.8 hypothetical protein compare
BPHYT_RS24955 +0.7 1.1 cytochrome C peroxidase compare
BPHYT_RS26130 +0.7 1.3 ABC transporter permease compare
BPHYT_RS24165 +0.7 1.9 NAD-dependent dehydratase compare
BPHYT_RS04315 +0.7 2.7 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS07845 +0.7 1.3 LysR family transcriptional regulator compare
BPHYT_RS13210 +0.7 3.3 hypothetical protein compare
BPHYT_RS01990 +0.7 2.1 methyl-accepting chemotaxis protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days across organisms