Experiment set22IT068 for Burkholderia phytofirmans PsJN

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17405 -4.5 -2.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS04955 -4.4 -2.7 methionyl-tRNA synthetase compare
BPHYT_RS13705 -4.2 -5.6 chorismate synthase compare
BPHYT_RS14895 -3.8 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -3.7 -6.1 homoserine dehydrogenase compare
BPHYT_RS06555 -3.6 -11.8 ketol-acid reductoisomerase compare
BPHYT_RS33865 -3.3 -7.8 tryptophan synthase alpha chain compare
BPHYT_RS04725 -3.3 -9.9 sulfite reductase compare
BPHYT_RS18705 -3.2 -2.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS33915 -3.1 -9.2 isopropylmalate isomerase compare
BPHYT_RS17690 -3.1 -12.7 imidazole glycerol phosphate synthase compare
BPHYT_RS33875 -3.0 -10.9 tryptophan synthase subunit alpha compare
BPHYT_RS33835 -3.0 -10.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS16245 -3.0 -3.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS02590 -3.0 -9.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17855 -3.0 -14.4 glutamate synthase compare
BPHYT_RS33900 -3.0 -12.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS01590 -2.9 -9.5 methionine biosynthesis protein MetW compare
BPHYT_RS33880 -2.9 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14915 -2.9 -9.1 phosphoserine aminotransferase compare
BPHYT_RS12530 -2.9 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17685 -2.8 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15915 -2.7 -11.5 ornithine carbamoyltransferase compare
BPHYT_RS06545 -2.7 -11.0 acetolactate synthase compare
BPHYT_RS17680 -2.7 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS05225 -2.7 -10.5 phosphoenolpyruvate carboxylase compare
BPHYT_RS16270 -2.7 -4.7 phosphoglycerate kinase compare
BPHYT_RS17700 -2.7 -5.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06900 -2.6 -5.9 aspartate aminotransferase compare
BPHYT_RS01595 -2.6 -8.9 homoserine O-acetyltransferase compare
BPHYT_RS13605 -2.5 -1.5 tRNA-Pro compare
BPHYT_RS15920 -2.5 -10.1 argininosuccinate synthase compare
BPHYT_RS12845 -2.4 -12.9 ATPase compare
BPHYT_RS16835 -2.4 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02045 -2.4 -5.3 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS17715 -2.4 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33645 -2.4 -7.0 homoserine kinase compare
BPHYT_RS17390 -2.3 -14.3 anthranilate synthase subunit I compare
BPHYT_RS17945 -2.3 -3.2 cytochrome C biogenesis protein compare
BPHYT_RS03150 -2.3 -11.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04740 -2.2 -7.3 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33920 -2.2 -5.8 type II citrate synthase compare
BPHYT_RS12840 -2.2 -2.9 pyruvate dehydrogenase compare
BPHYT_RS17670 -2.2 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS30990 -2.2 -2.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS09500 -2.2 -7.0 glucose-6-phosphate isomerase compare
BPHYT_RS18320 -2.1 -6.5 orotate phosphoribosyltransferase compare
BPHYT_RS12150 -2.1 -13.0 PII uridylyl-transferase compare
BPHYT_RS22740 -2.1 -4.9 ABC transporter permease conserved
BPHYT_RS16735 -2.1 -6.3 phosphogluconate dehydratase compare
BPHYT_RS06405 -2.1 -5.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS33840 -2.1 -6.2 amidophosphoribosyltransferase compare
BPHYT_RS02765 -2.1 -1.3 cytochrome BD oxidase subunit I compare
BPHYT_RS17400 -2.1 -6.7 anthranilate phosphoribosyltransferase compare
BPHYT_RS17890 -2.0 -1.6 shikimate kinase compare
BPHYT_RS04720 -2.0 -5.7 transcriptional regulator compare
BPHYT_RS28705 -2.0 -1.4 IclR family transcriptional regulator compare
BPHYT_RS17885 -2.0 -4.2 3-dehydroquinate synthase compare
BPHYT_RS06610 -1.9 -2.0 triosephosphate isomerase compare
BPHYT_RS14910 -1.8 -8.3 chorismate mutase compare
BPHYT_RS02905 -1.8 -13.1 RNA polymerase subunit sigma-54 compare
BPHYT_RS05020 -1.7 -5.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS08410 -1.6 -1.5 dehydrogenase compare
BPHYT_RS33905 -1.6 -1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS02610 -1.6 -4.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS09480 -1.6 -1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12935 -1.6 -6.0 chemotaxis protein CheY compare
BPHYT_RS12940 -1.6 -4.9 signal transduction histidine kinase compare
BPHYT_RS06045 -1.6 -7.4 transaldolase compare
BPHYT_RS09515 -1.6 -1.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17675 -1.6 -3.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16905 -1.5 -4.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS10100 -1.5 -4.5 dihydroxy-acid dehydratase compare
BPHYT_RS29320 -1.5 -2.7 histidine kinase compare
BPHYT_RS04730 -1.5 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS06685 -1.4 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS21485 -1.4 -1.4 hypothetical protein compare
BPHYT_RS03645 -1.4 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS04335 -1.4 -1.7 membrane protein compare
BPHYT_RS22910 -1.4 -1.1 hypothetical protein compare
BPHYT_RS14845 -1.4 -0.9 cysteine synthase compare
BPHYT_RS26465 -1.4 -1.7 metallophosphoesterase compare
BPHYT_RS12060 -1.4 -1.8 hypothetical protein compare
BPHYT_RS02975 -1.4 -1.3 membrane protein compare
BPHYT_RS15710 -1.4 -0.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS11810 -1.4 -2.0 LysR family transcriptional regulator compare
BPHYT_RS21470 -1.4 -1.7 6-hydroxynicotinate reductase compare
BPHYT_RS11635 -1.3 -1.4 RNA polymerase subunit sigma-24 compare
BPHYT_RS20900 -1.3 -2.6 phytanoyl-CoA dioxygenase compare
BPHYT_RS22735 -1.3 -3.5 sugar ABC transporter ATP-binding protein compare
BPHYT_RS28360 -1.3 -1.5 carboxymuconolactone decarboxylase compare
BPHYT_RS32210 -1.3 -1.7 hypothetical protein compare
BPHYT_RS02050 -1.2 -4.6 D-mannose isomerase (EC 5.3.1.7) (from data) compare
BPHYT_RS16840 -1.2 -1.3 transketolase compare
BPHYT_RS20790 -1.2 -1.7 TetR family transcriptional regulator compare
BPHYT_RS14855 -1.2 -1.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06600 -1.2 -1.7 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS13395 -1.2 -2.2 endoribonuclease L-PSP compare
BPHYT_RS03280 -1.2 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS17240 -1.2 -0.9 cell division protein FtsW compare
BPHYT_RS28485 -1.2 -1.1 GntR family transcriptional regulator compare
BPHYT_RS03625 -1.2 -5.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS08335 -1.1 -1.6 hypothetical protein compare
BPHYT_RS09145 -1.1 -5.6 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS02690 -1.1 -7.1 protoheme IX farnesyltransferase compare
BPHYT_RS14050 -1.1 -6.0 UDP pyrophosphate phosphatase compare
BPHYT_RS01505 -1.1 -2.5 7-cyano-7-deazaguanine reductase compare
BPHYT_RS05610 -1.1 -6.2 DNA-cytosine methyltransferase compare
BPHYT_RS34565 -1.1 -2.4 chemotaxis protein compare
BPHYT_RS06915 -1.1 -1.7 hypothetical protein compare
BPHYT_RS09160 -1.1 -3.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS05235 -1.1 -1.5 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS03570 -1.1 -4.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS08850 -1.0 -0.6 transcriptional regulator compare
BPHYT_RS14190 -1.0 -2.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS31290 -1.0 -2.2 histidine kinase compare
BPHYT_RS33765 -1.0 -1.2 membrane protein compare
BPHYT_RS24285 -1.0 -1.2 TetR family transcriptional regulator compare
BPHYT_RS06040 -1.0 -2.6 3-demethylubiquinone-9 3-methyltransferase compare
BPHYT_RS30770 -1.0 -1.9 hypothetical protein compare
BPHYT_RS14245 -1.0 -1.1 membrane protein compare
BPHYT_RS07060 -1.0 -2.4 aldo/keto reductase compare
BPHYT_RS17920 -1.0 -1.1 protein CyaY compare
BPHYT_RS04745 -1.0 -4.0 sulfate adenylyltransferase compare
BPHYT_RS30285 -1.0 -2.8 succinate-semialdehyde dehydrogenase compare
BPHYT_RS26040 -1.0 -1.6 cysteine hydrolase compare
BPHYT_RS12465 -1.0 -0.8 inositol monophosphatase compare
BPHYT_RS17395 -1.0 -2.0 anthranilate synthase subunit II compare
BPHYT_RS35655 -1.0 -1.4 hypothetical protein compare
BPHYT_RS22360 -1.0 -1.8 response regulator receiver compare
BPHYT_RS29520 -0.9 -1.0 hypothetical protein compare
BPHYT_RS20070 -0.9 -1.7 hypothetical protein compare
BPHYT_RS15570 -0.9 -5.3 NAD-dependent dehydratase compare
BPHYT_RS26550 -0.9 -1.5 Fis family transcriptional regulator compare
BPHYT_RS20440 -0.9 -1.3 IclR family transcriptional regulator compare
BPHYT_RS30760 -0.9 -2.8 MmgE/PrpD family protein compare
BPHYT_RS10740 -0.9 -1.0 LuxR family transcriptional regulator compare
BPHYT_RS18600 -0.9 -1.3 glutathione S-transferase compare
BPHYT_RS30490 -0.9 -1.0 2-haloalkanoic acid dehalogenase compare
BPHYT_RS23090 -0.9 -1.6 histidine kinase compare
BPHYT_RS26470 -0.9 -1.1 MFS transporter compare
BPHYT_RS06065 -0.9 -6.1 cytochrome C compare
BPHYT_RS16090 -0.9 -0.8 hypothetical protein compare
BPHYT_RS14945 -0.9 -2.4 phosphoglycolate phosphatase compare
BPHYT_RS06325 -0.9 -3.6 ATPase compare
BPHYT_RS22265 -0.9 -1.1 hypothetical protein compare
BPHYT_RS14900 -0.9 -2.0 prephenate dehydrogenase compare
BPHYT_RS14735 -0.9 -1.0 hypothetical protein compare
BPHYT_RS10120 -0.9 -2.4 membrane protein compare
BPHYT_RS07690 -0.9 -1.4 AraC family transcriptional regulator compare
BPHYT_RS19785 -0.9 -1.1 chemotaxis protein CheY compare
BPHYT_RS31130 -0.9 -2.4 hypothetical protein compare
BPHYT_RS14195 -0.9 -1.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14505 -0.9 -1.7 membrane protein compare
BPHYT_RS19660 -0.9 -1.5 hypothetical protein compare
BPHYT_RS08565 -0.9 -0.5 dihydroorotate dehydrogenase compare
BPHYT_RS11310 -0.9 -1.0 LysR family transcriptional regulator compare
BPHYT_RS03255 -0.9 -2.3 glutathione S-transferase compare
BPHYT_RS21905 -0.9 -0.7 IclR family transcriptional regulator compare
BPHYT_RS25285 -0.8 -3.1 AraC family transcriptional regulator compare
BPHYT_RS35310 -0.8 -1.3 GCN5 family N-acetyltransferase compare
BPHYT_RS24315 -0.8 -1.4 phosphoribosyltransferase compare
BPHYT_RS27345 -0.8 -2.4 aldehyde dehydrogenase compare
BPHYT_RS34250 -0.8 -4.8 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS30515 -0.8 -2.7 sorbose dehydrogenase compare
BPHYT_RS23385 -0.8 -1.4 group 1 glycosyl transferase compare
BPHYT_RS05960 -0.8 -2.4 endoribonuclease L-PSP compare
BPHYT_RS25875 -0.8 -0.8 type III secretion protein compare
BPHYT_RS30790 -0.8 -2.9 porin compare
BPHYT_RS04370 -0.8 -0.8 glycosyl transferase compare
BPHYT_RS08880 -0.8 -2.9 phosphate transport regulator compare
BPHYT_RS04860 -0.8 -2.0 ABC transporter ATP-binding protein compare
BPHYT_RS07935 -0.8 -1.6 Rrf2 family transcriptional regulator compare
BPHYT_RS03400 -0.8 -0.5 ATP-dependent DNA helicase RecG compare
BPHYT_RS16345 -0.8 -2.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS26025 -0.8 -0.7 hypothetical protein compare
BPHYT_RS26540 -0.8 -1.2 hypothetical protein compare
BPHYT_RS26310 -0.8 -1.2 ribonuclease R compare
BPHYT_RS23540 -0.8 -2.6 RND transporter compare
BPHYT_RS30425 -0.8 -1.1 LysR family transcriptional regulator compare
BPHYT_RS01170 -0.8 -1.1 hypothetical protein compare
BPHYT_RS33130 -0.8 -1.7 transcriptional regulator compare
BPHYT_RS25830 -0.8 -2.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS36480 -0.8 -1.6 hypothetical protein compare
BPHYT_RS36090 -0.8 -1.6 hypothetical protein compare
BPHYT_RS08545 -0.8 -1.8 oxidoreductase compare
BPHYT_RS28635 -0.8 -1.9 hypothetical protein compare
BPHYT_RS08130 -0.7 -0.6 transposase compare
BPHYT_RS14865 -0.7 -1.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS19325 -0.7 -1.2 glycine cleavage system H protein compare
BPHYT_RS11970 -0.7 -1.2 cupin compare
BPHYT_RS06410 -0.7 -1.1 transcriptional regulator compare
BPHYT_RS27865 -0.7 -1.7 ATPase compare
BPHYT_RS06350 -0.7 -0.9 chemotaxis protein CheY compare
BPHYT_RS25540 -0.7 -1.7 phosphohydrolase compare
BPHYT_RS23570 -0.7 -2.5 chemotaxis protein CheY compare
BPHYT_RS28680 -0.7 -1.9 porin compare
BPHYT_RS36150 -0.7 -2.0 hypothetical protein compare
BPHYT_RS36240 -0.7 -1.2 hypothetical protein compare
BPHYT_RS06195 -0.7 -1.6 membrane protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in carbon source experiments

For carbon source D-Fructose across organisms