Experiment set22IT064 for Burkholderia phytofirmans PsJN

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -6.9 -4.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17675 -6.7 -3.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33875 -6.0 -8.2 tryptophan synthase subunit alpha compare
BPHYT_RS17400 -5.9 -9.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS17680 -5.8 -4.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16835 -5.8 -7.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS03150 -5.7 -16.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS13705 -5.7 -3.9 chorismate synthase compare
BPHYT_RS17690 -5.6 -13.1 imidazole glycerol phosphate synthase compare
BPHYT_RS17670 -5.6 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33835 -5.5 -11.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS06545 -5.5 -11.7 acetolactate synthase compare
BPHYT_RS06555 -5.4 -10.3 ketol-acid reductoisomerase compare
BPHYT_RS04725 -5.3 -9.5 sulfite reductase compare
BPHYT_RS17685 -5.2 -11.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS12055 -5.2 -16.3 phosphoenolpyruvate synthase compare
BPHYT_RS15915 -5.1 -10.9 ornithine carbamoyltransferase compare
BPHYT_RS17855 -5.1 -15.9 glutamate synthase compare
BPHYT_RS09500 -5.0 -9.5 glucose-6-phosphate isomerase compare
BPHYT_RS15920 -4.9 -12.3 argininosuccinate synthase compare
BPHYT_RS33865 -4.9 -9.3 tryptophan synthase alpha chain compare
BPHYT_RS14915 -4.8 -6.9 phosphoserine aminotransferase compare
BPHYT_RS33880 -4.8 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14855 -4.8 -3.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14895 -4.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14910 -4.7 -13.0 chorismate mutase compare
BPHYT_RS02590 -4.6 -9.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16270 -4.6 -4.6 phosphoglycerate kinase compare
BPHYT_RS33900 -4.6 -13.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS17390 -4.6 -16.0 anthranilate synthase subunit I compare
BPHYT_RS17395 -4.5 -3.5 anthranilate synthase subunit II compare
BPHYT_RS18320 -4.3 -5.8 orotate phosphoribosyltransferase compare
BPHYT_RS01595 -4.3 -11.5 homoserine O-acetyltransferase compare
BPHYT_RS04740 -4.2 -8.5 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33645 -4.2 -5.0 homoserine kinase compare
BPHYT_RS05225 -4.2 -11.3 phosphoenolpyruvate carboxylase compare
BPHYT_RS05960 -4.2 -8.2 endoribonuclease L-PSP compare
BPHYT_RS08955 -4.2 -7.4 homoserine dehydrogenase compare
BPHYT_RS01590 -4.1 -7.0 methionine biosynthesis protein MetW compare
BPHYT_RS02570 -4.0 -9.4 phosphocarrier protein HPr compare
BPHYT_RS33915 -4.0 -10.4 isopropylmalate isomerase compare
BPHYT_RS12530 -4.0 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17715 -3.9 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17890 -3.9 -2.6 shikimate kinase compare
BPHYT_RS33920 -3.8 -3.7 type II citrate synthase compare
BPHYT_RS10100 -3.8 -6.7 dihydroxy-acid dehydratase compare
BPHYT_RS16245 -3.8 -2.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06405 -3.7 -5.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS17405 -3.5 -2.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS06900 -3.3 -5.4 aspartate aminotransferase compare
BPHYT_RS04955 -3.3 -3.2 methionyl-tRNA synthetase compare
BPHYT_RS04720 -3.1 -7.2 transcriptional regulator compare
BPHYT_RS17700 -3.0 -4.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS33905 -3.0 -2.6 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS04730 -3.0 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS06190 -2.9 -4.7 heptosyltransferase compare
BPHYT_RS33840 -2.9 -6.6 amidophosphoribosyltransferase compare
BPHYT_RS16905 -2.8 -4.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS03535 -2.7 -7.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17885 -2.7 -5.3 3-dehydroquinate synthase compare
BPHYT_RS16975 -2.7 -6.9 shikimate 5-dehydrogenase compare
BPHYT_RS17640 -2.6 -2.4 2-alkenal reductase compare
BPHYT_RS14900 -2.5 -4.1 prephenate dehydrogenase compare
BPHYT_RS04965 -2.5 -9.9 ATP-binding protein compare
BPHYT_RS04745 -2.4 -5.2 sulfate adenylyltransferase compare
BPHYT_RS17520 -2.3 -4.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17380 -2.3 -9.0 ribulose-phosphate 3-epimerase compare
BPHYT_RS12925 -2.3 -1.9 exodeoxyribonuclease III compare
BPHYT_RS06610 -2.3 -1.4 triosephosphate isomerase compare
BPHYT_RS04385 -2.2 -3.5 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS04370 -2.2 -1.6 glycosyl transferase compare
BPHYT_RS12845 -2.2 -13.7 ATPase compare
BPHYT_RS15620 -2.2 -3.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06045 -2.1 -9.1 transaldolase compare
BPHYT_RS03645 -2.1 -2.4 tRNA dimethylallyltransferase compare
BPHYT_RS27370 -2.0 -3.1 CoA transferase compare
BPHYT_RS14190 -2.0 -4.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS13655 -2.0 -14.4 GTP pyrophosphokinase compare
BPHYT_RS09145 -1.9 -6.8 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03625 -1.8 -7.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS02905 -1.8 -13.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS15670 -1.7 -7.7 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS09860 -1.7 -1.9 pilus assembly protein PilP compare
BPHYT_RS08960 -1.7 -1.0 threonine synthase compare
BPHYT_RS13220 -1.7 -5.3 phosphomethylpyrimidine synthase compare
BPHYT_RS03570 -1.7 -6.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS06685 -1.6 -1.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14845 -1.6 -1.0 cysteine synthase compare
BPHYT_RS16840 -1.5 -1.4 transketolase compare
BPHYT_RS08950 -1.5 -4.5 aminotransferase compare
BPHYT_RS12150 -1.4 -9.9 PII uridylyl-transferase compare
BPHYT_RS08245 -1.4 -6.0 anti-sigma factor compare
BPHYT_RS12615 -1.4 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS06990 -1.4 -1.7 membrane protein compare
BPHYT_RS14660 -1.4 -1.9 hypothetical protein compare
BPHYT_RS12465 -1.4 -2.0 inositol monophosphatase compare
BPHYT_RS26965 -1.4 -1.8 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS35885 -1.3 -4.7 hypothetical protein compare
BPHYT_RS33150 -1.3 -1.4 beta-lactamase compare
BPHYT_RS11635 -1.3 -1.6 RNA polymerase subunit sigma-24 compare
BPHYT_RS30465 -1.3 -1.4 short-chain dehydrogenase compare
BPHYT_RS26970 -1.2 -6.8 L-lactate dehydrogenase, LldF subunit (from data) conserved
BPHYT_RS12985 -1.2 -0.8 amino acid acetyltransferase compare
BPHYT_RS09515 -1.2 -1.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS10095 -1.2 -1.6 integrase compare
BPHYT_RS04095 -1.2 -1.2 SAM-dependent methyltransferase PhcB compare
BPHYT_RS08150 -1.2 -1.5 membrane protein compare
BPHYT_RS16250 -1.2 -1.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS28945 -1.2 -3.9 endo-1,4-D-glucanase compare
BPHYT_RS16990 -1.2 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS06195 -1.1 -2.1 membrane protein compare
BPHYT_RS06600 -1.1 -1.8 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS04920 -1.1 -1.6 aspartate 1-decarboxylase compare
BPHYT_RS28860 -1.1 -1.2 haloacid dehalogenase compare
BPHYT_RS10645 -1.1 -1.5 cyanate hydratase compare
BPHYT_RS34900 -1.0 -3.1 hypothetical protein compare
BPHYT_RS02690 -1.0 -6.1 protoheme IX farnesyltransferase compare
BPHYT_RS08455 -1.0 -6.2 ribonuclease R compare
BPHYT_RS02965 -1.0 -2.8 membrane protein compare
BPHYT_RS24500 -1.0 -1.8 histidine kinase compare
BPHYT_RS22815 -1.0 -1.9 TonB-denpendent receptor compare
BPHYT_RS19660 -1.0 -1.8 hypothetical protein compare
BPHYT_RS25875 -1.0 -1.4 type III secretion protein compare
BPHYT_RS33580 -1.0 -3.3 geranyltranstransferase compare
BPHYT_RS01985 -1.0 -2.2 hypothetical protein compare
BPHYT_RS34655 -1.0 -1.8 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS30645 -1.0 -1.7 hypothetical protein compare
BPHYT_RS16345 -1.0 -2.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06375 -1.0 -3.3 ribonuclease compare
BPHYT_RS12940 -0.9 -2.9 signal transduction histidine kinase compare
BPHYT_RS12840 -0.9 -2.2 pyruvate dehydrogenase compare
BPHYT_RS27065 -0.9 -1.6 hypothetical protein compare
BPHYT_RS15415 -0.9 -5.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08565 -0.9 -0.5 dihydroorotate dehydrogenase compare
BPHYT_RS09155 -0.9 -4.3 3-ketoacyl-ACP reductase compare
BPHYT_RS08410 -0.9 -1.1 dehydrogenase compare
BPHYT_RS23270 -0.9 -1.3 enoyl-CoA hydratase compare
BPHYT_RS03495 -0.9 -4.1 hypothetical protein compare
BPHYT_RS20220 -0.9 -1.3 antibiotic synthesis protein MbtH compare
BPHYT_RS27495 -0.9 -1.0 hypothetical protein compare
BPHYT_RS04335 -0.9 -1.5 membrane protein compare
BPHYT_RS12935 -0.9 -5.3 chemotaxis protein CheY compare
BPHYT_RS03725 -0.9 -0.6 serine hydroxymethyltransferase compare
BPHYT_RS23975 -0.9 -2.2 peroxidase compare
BPHYT_RS23315 -0.9 -1.6 hypothetical protein compare
BPHYT_RS32240 -0.9 -1.6 chromosome replication initiation inhibitor protein compare
BPHYT_RS20070 -0.9 -1.8 hypothetical protein compare
BPHYT_RS03995 -0.9 -2.6 protein tyrosine kinase compare
BPHYT_RS28360 -0.9 -1.6 carboxymuconolactone decarboxylase compare
BPHYT_RS11310 -0.9 -1.4 LysR family transcriptional regulator compare
BPHYT_RS08765 -0.8 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS16985 -0.8 -4.0 esterase compare
BPHYT_RS22865 -0.8 -3.0 ATPase compare
BPHYT_RS12510 -0.8 -1.2 RNA-binding protein compare
BPHYT_RS17035 -0.8 -1.5 sugar kinase compare
BPHYT_RS25980 -0.8 -1.1 urea carboxylase compare
BPHYT_RS02975 -0.8 -1.2 membrane protein compare
BPHYT_RS10120 -0.8 -2.5 membrane protein compare
BPHYT_RS17525 -0.8 -1.1 glutaredoxin compare
BPHYT_RS14060 -0.8 -1.3 peptidase M23 compare
BPHYT_RS02575 -0.8 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS18340 -0.8 -0.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16265 -0.8 -2.3 hypothetical protein compare
BPHYT_RS26185 -0.8 -1.1 thioesterase compare
BPHYT_RS29655 -0.8 -2.1 polysaccharide deacetylase compare
BPHYT_RS18280 -0.8 -4.0 TetR family transcriptional regulator compare
BPHYT_RS15260 -0.8 -2.0 chorismate mutase compare
BPHYT_RS32200 -0.8 -1.6 lytic transglycosylase compare
BPHYT_RS12590 -0.8 -1.6 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS12060 -0.8 -1.2 hypothetical protein compare
BPHYT_RS28605 -0.8 -1.3 NADPH-dependent FMN reductase compare
BPHYT_RS36090 -0.8 -1.6 hypothetical protein compare
BPHYT_RS34920 -0.8 -1.2 IclR family transcriptional regulator compare
BPHYT_RS05485 -0.8 -2.3 nitrogen regulatory protein P-II 1 compare
BPHYT_RS27175 -0.8 -0.9 DNA-binding protein compare
BPHYT_RS11235 -0.8 -1.1 hypothetical protein compare
BPHYT_RS28480 -0.8 -2.4 hydroxyglutarate oxidase compare
BPHYT_RS05255 -0.8 -1.2 phage abortive infection protein compare
BPHYT_RS20215 -0.7 -2.9 RNA polymerase sigma 70 compare
BPHYT_RS29915 -0.7 -1.6 GntR family transcriptional regulator compare
BPHYT_RS10205 -0.7 -2.3 D-lactate dehydrogenase compare
BPHYT_RS10740 -0.7 -1.0 LuxR family transcriptional regulator compare
BPHYT_RS36435 -0.7 -1.9 hypothetical protein compare
BPHYT_RS28780 -0.7 -3.0 NADH:flavin oxidoreductase compare
BPHYT_RS06175 -0.7 -1.6 LPS biosynthesis compare
BPHYT_RS03640 -0.7 -0.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS10470 -0.7 -1.9 hypothetical protein compare
BPHYT_RS36150 -0.7 -1.8 hypothetical protein compare
BPHYT_RS07165 -0.7 -1.4 peptide ABC transporter permease compare
BPHYT_RS11285 -0.7 -1.8 LacI family transcription regulator compare
BPHYT_RS06925 -0.7 -3.6 membrane protein compare
BPHYT_RS20665 -0.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS29795 -0.7 -1.4 elongation factor compare
BPHYT_RS02180 -0.7 -1.4 hypothetical protein compare
BPHYT_RS16470 -0.7 -2.9 DeoR faimly transcriptional regulator compare
BPHYT_RS25970 -0.7 -1.1 urea amidolyase compare
BPHYT_RS25020 -0.7 -1.4 phospholipid-binding protein compare
BPHYT_RS06325 -0.7 -3.4 ATPase compare
BPHYT_RS17695 -0.7 -2.1 membrane protein compare
BPHYT_RS05525 -0.7 -2.0 sensor histidine kinase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium D,L-Lactate in Burkholderia phytofirmans PsJN

For carbon source Sodium D,L-Lactate across organisms