Experiment set22IT059 for Burkholderia phytofirmans PsJN

Compare to:

LB_noSalt

200 most important genes:

  gene name fitness t score description  
BPHYT_RS06975 -3.8 -2.6 glutamate racemase compare
BPHYT_RS14865 -2.7 -2.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16245 -2.4 -3.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16270 -2.4 -4.7 phosphoglycerate kinase compare
BPHYT_RS16710 -2.3 -1.0 LysR family transcriptional regulator compare
BPHYT_RS12265 -2.3 -2.0 alanine acetyltransferase compare
BPHYT_RS02765 -2.1 -1.3 cytochrome BD oxidase subunit I compare
BPHYT_RS17095 -2.1 -2.7 proline--tRNA ligase compare
BPHYT_RS26435 -1.8 -2.3 hypothetical protein compare
BPHYT_RS17520 -1.8 -3.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS33920 -1.8 -5.4 type II citrate synthase compare
BPHYT_RS15620 -1.8 -2.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08130 -1.7 -1.9 transposase compare
BPHYT_RS16835 -1.7 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS26965 -1.7 -1.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS06405 -1.6 -4.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS04010 -1.6 -1.4 glycosyl transferase compare
BPHYT_RS22940 -1.6 -1.5 pilus assembly protein TadE compare
BPHYT_RS20095 -1.6 -1.3 transcriptional regulator compare
BPHYT_RS02590 -1.5 -6.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS11635 -1.5 -1.6 RNA polymerase subunit sigma-24 compare
BPHYT_RS12990 -1.5 -2.4 iron transporter compare
BPHYT_RS16345 -1.5 -2.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS33765 -1.4 -1.6 membrane protein compare
BPHYT_RS25070 -1.4 -2.0 choline ABC transporter permease compare
BPHYT_RS02755 -1.4 -1.6 cyd operon protein YbgT compare
BPHYT_RS02525 -1.4 -5.0 membrane protein compare
BPHYT_RS12055 -1.4 -10.0 phosphoenolpyruvate synthase compare
BPHYT_RS14845 -1.3 -0.9 cysteine synthase compare
BPHYT_RS20665 -1.3 -1.6 LysR family transcriptional regulator compare
BPHYT_RS15710 -1.3 -0.8 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS23455 -1.3 -1.1 phosphorylase compare
BPHYT_RS03410 -1.3 -1.0 queuine tRNA-ribosyltransferase compare
BPHYT_RS30490 -1.3 -1.4 2-haloalkanoic acid dehalogenase compare
BPHYT_RS06610 -1.3 -1.1 triosephosphate isomerase compare
BPHYT_RS14245 -1.3 -1.5 membrane protein compare
BPHYT_RS28370 -1.3 -2.0 peroxidase compare
BPHYT_RS08410 -1.3 -1.3 dehydrogenase compare
BPHYT_RS33840 -1.3 -4.4 amidophosphoribosyltransferase compare
BPHYT_RS03655 -1.2 -1.5 membrane protein compare
BPHYT_RS12150 -1.2 -7.3 PII uridylyl-transferase compare
BPHYT_RS27495 -1.2 -1.1 hypothetical protein compare
BPHYT_RS12465 -1.2 -1.7 inositol monophosphatase compare
BPHYT_RS01630 -1.2 -2.3 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS12845 -1.2 -9.4 ATPase compare
BPHYT_RS04335 -1.2 -1.6 membrane protein compare
BPHYT_RS15075 -1.2 -1.4 dihydrokaempferol 4-reductase compare
BPHYT_RS10670 -1.2 -1.8 catechol 1,2-dioxygenase compare
BPHYT_RS20070 -1.1 -2.2 hypothetical protein compare
BPHYT_RS34665 -1.1 -2.4 hypothetical protein compare
BPHYT_RS16175 -1.1 -1.2 hemolysin D compare
BPHYT_RS15415 -1.1 -6.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02610 -1.1 -2.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS03480 -1.1 -5.6 ferritin compare
BPHYT_RS24500 -1.1 -1.3 histidine kinase compare
BPHYT_RS06375 -1.1 -2.7 ribonuclease compare
BPHYT_RS10400 -1.1 -1.2 taurine ABC transporter permease compare
BPHYT_RS30450 -1.1 -1.0 ABC transporter permease compare
BPHYT_RS34900 -1.0 -2.3 hypothetical protein compare
BPHYT_RS09545 -1.0 -1.7 peptide methionine sulfoxide reductase compare
BPHYT_RS13320 -1.0 -1.2 allantoate amidohydrolase compare
BPHYT_RS36215 -1.0 -3.1 hypothetical protein compare
BPHYT_RS12280 -1.0 -1.2 RNA helicase compare
BPHYT_RS12615 -1.0 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS13645 -1.0 -7.8 threonine--tRNA ligase compare
BPHYT_RS06600 -1.0 -1.5 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS07595 -1.0 -1.6 membrane protein compare
BPHYT_RS36150 -1.0 -2.6 hypothetical protein compare
BPHYT_RS26080 -1.0 -1.4 ABC transporter ATPase compare
BPHYT_RS18765 -1.0 -3.4 flagellar biosynthesis protein FliS compare
BPHYT_RS22295 -1.0 -1.2 LysR family transcriptional regulator compare
BPHYT_RS10650 -1.0 -1.4 membrane protein compare
BPHYT_RS30890 -1.0 -1.5 hypothetical protein compare
BPHYT_RS03400 -0.9 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS02965 -0.9 -1.9 membrane protein compare
BPHYT_RS09515 -0.9 -0.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12925 -0.9 -1.0 exodeoxyribonuclease III compare
BPHYT_RS11745 -0.9 -1.1 (2Fe-2S)-binding protein compare
BPHYT_RS27175 -0.9 -1.0 DNA-binding protein compare
BPHYT_RS25870 -0.9 -0.9 type III secretion system ATPase compare
BPHYT_RS08850 -0.9 -0.5 transcriptional regulator compare
BPHYT_RS17525 -0.9 -1.6 glutaredoxin compare
BPHYT_RS30860 -0.9 -1.3 sugar ABC transporter permease compare
BPHYT_RS02100 -0.9 -1.4 AsnC family transcriptional regulator compare
BPHYT_RS07935 -0.9 -1.8 Rrf2 family transcriptional regulator compare
BPHYT_RS31385 -0.8 -1.8 ketoacyl reductase compare
BPHYT_RS02180 -0.8 -2.0 hypothetical protein compare
BPHYT_RS28660 -0.8 -1.2 polyvinylalcohol dehydrogenase compare
BPHYT_RS03875 -0.8 -2.0 dehydrogenase compare
BPHYT_RS29920 -0.8 -0.7 hypothetical protein compare
BPHYT_RS13470 -0.8 -0.8 arylsulfate sulfotransferase compare
BPHYT_RS26525 -0.8 -1.2 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS10395 -0.8 -1.4 sulfonate ABC transporter compare
BPHYT_RS22455 -0.8 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS11750 -0.8 -1.7 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS28360 -0.8 -1.4 carboxymuconolactone decarboxylase compare
BPHYT_RS28805 -0.8 -1.4 glyoxalase compare
BPHYT_RS32830 -0.8 -1.3 AraC family transcriptional regulator compare
BPHYT_RS08060 -0.8 -2.9 ribosome maturation factor RimP compare
BPHYT_RS02760 -0.8 -0.7 cytochrome BD oxidase subunit II compare
BPHYT_RS25395 -0.8 -1.7 3-oxoacyl-ACP reductase compare
BPHYT_RS25340 -0.8 -1.2 sulfatase compare
BPHYT_RS11095 -0.8 -1.3 glycosyl transferase compare
BPHYT_RS06350 -0.8 -1.0 chemotaxis protein CheY compare
BPHYT_RS14900 -0.8 -1.9 prephenate dehydrogenase compare
BPHYT_RS33695 -0.8 -2.5 molybdenum ABC transporter ATPase compare
BPHYT_RS20355 -0.8 -1.7 ABC transporter substrate-binding protein compare
BPHYT_RS06985 -0.8 -4.2 fumarate hydratase compare
BPHYT_RS23940 -0.8 -1.3 GntR family transcriptional regulator compare
BPHYT_RS22260 -0.8 -1.5 hypothetical protein compare
BPHYT_RS14095 -0.7 -0.9 phosphohistidine phosphatase compare
BPHYT_RS27570 -0.7 -1.4 universal stress protein UspA compare
BPHYT_RS13900 -0.7 -1.9 ATPase compare
BPHYT_RS29520 -0.7 -0.9 hypothetical protein compare
BPHYT_RS17100 -0.7 -2.6 RNA pyrophosphohydrolase compare
BPHYT_RS26925 -0.7 -1.1 NIPSNAP family containing protein compare
BPHYT_RS07325 -0.7 -0.7 GntR family transcriptional regulator compare
BPHYT_RS00350 -0.7 -2.2 hypothetical protein compare
BPHYT_RS02660 -0.7 -1.1 membrane protein compare
BPHYT_RS11825 -0.7 -0.8 cytosine deaminase compare
BPHYT_RS27305 -0.7 -1.2 hypothetical protein compare
BPHYT_RS09590 -0.7 -2.0 thioesterase compare
BPHYT_RS36090 -0.7 -1.1 hypothetical protein compare
BPHYT_RS23770 -0.7 -1.6 GntR family transcriptional regulator compare
BPHYT_RS17680 -0.7 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS00960 -0.7 -1.7 recombinase RecA compare
BPHYT_RS02010 -0.7 -1.4 copper homeostasis protein CutC compare
BPHYT_RS29015 -0.7 -1.4 RND transporter compare
BPHYT_RS15190 -0.7 -1.3 acyl carrier protein compare
BPHYT_RS01620 -0.7 -2.2 sensor histidine kinase compare
BPHYT_RS32870 -0.7 -1.9 hypothetical protein compare
BPHYT_RS28040 -0.7 -2.2 acyl-CoA dehydrogenase compare
BPHYT_RS01485 -0.7 -0.6 histidine kinase compare
BPHYT_RS11235 -0.7 -0.9 hypothetical protein compare
BPHYT_RS17860 -0.7 -2.5 transposase compare
BPHYT_RS24045 -0.7 -1.5 amino acid ABC transporter compare
BPHYT_RS30140 -0.7 -1.1 3-methylitaconate isomerase compare
BPHYT_RS12590 -0.7 -1.2 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS27180 -0.7 -2.5 GntR family transcriptional regulator compare
BPHYT_RS27370 -0.7 -1.5 CoA transferase compare
BPHYT_RS08565 -0.7 -0.4 dihydroorotate dehydrogenase compare
BPHYT_RS16340 -0.7 -1.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS28075 -0.7 -0.9 cytochrome B561 compare
BPHYT_RS34920 -0.7 -1.7 IclR family transcriptional regulator compare
BPHYT_RS12725 -0.7 -5.1 regulator compare
BPHYT_RS12155 -0.7 -2.1 RNA-binding protein S4 compare
BPHYT_RS10995 -0.7 -1.5 GntR family transcriptional regulator compare
BPHYT_RS21130 -0.7 -1.1 F420-dependent oxidoreductase compare
BPHYT_RS11475 -0.7 -2.5 2-nitropropane dioxygenase compare
BPHYT_RS12840 -0.7 -1.6 pyruvate dehydrogenase compare
BPHYT_RS02005 -0.7 -1.2 diguanylate phosphodiesterase compare
BPHYT_RS33885 -0.7 -5.4 tRNA pseudouridine synthase A compare
BPHYT_RS13350 -0.7 -2.5 shikimate kinase compare
BPHYT_RS10465 -0.7 -2.6 hypothetical protein compare
BPHYT_RS01835 -0.7 -1.5 aldose epimerase compare
BPHYT_RS08955 -0.7 -2.1 homoserine dehydrogenase compare
BPHYT_RS07085 -0.7 -1.7 LysR family transcriptional regulator compare
BPHYT_RS03110 -0.7 -1.7 MarR family transcriptional regulator compare
BPHYT_RS06175 -0.7 -2.2 LPS biosynthesis compare
BPHYT_RS11480 -0.7 -1.8 heme ABC transporter ATP-binding protein compare
BPHYT_RS02710 -0.7 -0.7 hypothetical protein compare
BPHYT_RS25140 -0.7 -1.8 hypothetical protein compare
BPHYT_RS02975 -0.7 -0.9 membrane protein compare
BPHYT_RS03755 -0.7 -1.3 pilus assembly protein PilE compare
BPHYT_RS23230 -0.7 -0.6 histidine kinase compare
BPHYT_RS23280 -0.7 -1.7 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS35255 -0.7 -2.3 AraC family transcriptional regulator compare
BPHYT_RS33580 -0.6 -1.9 geranyltranstransferase compare
BPHYT_RS25935 -0.6 -1.4 type III secretion protein compare
BPHYT_RS05490 -0.6 -2.9 porin compare
BPHYT_RS15865 -0.6 -3.1 exodeoxyribonuclease VII large subunit compare
BPHYT_RS09330 -0.6 -3.6 phytoene synthase compare
BPHYT_RS08975 -0.6 -2.2 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS02285 -0.6 -2.6 cell division protein compare
BPHYT_RS35655 -0.6 -1.0 hypothetical protein compare
BPHYT_RS30760 -0.6 -2.1 MmgE/PrpD family protein compare
BPHYT_RS24505 -0.6 -2.4 glyoxalase compare
BPHYT_RS15490 -0.6 -1.4 coproporphyrinogen III oxidase compare
BPHYT_RS30880 -0.6 -1.8 peptidase S13 compare
BPHYT_RS26380 -0.6 -1.4 cobalamin biosynthesis protein CobT compare
BPHYT_RS11705 -0.6 -0.7 hypothetical protein compare
BPHYT_RS00325 -0.6 -1.3 hypothetical protein compare
BPHYT_RS25645 -0.6 -1.7 dehydrogenase compare
BPHYT_RS25970 -0.6 -1.0 urea amidolyase compare
BPHYT_RS03780 -0.6 -2.2 acyl-CoA dehydrogenase compare
BPHYT_RS07690 -0.6 -1.3 AraC family transcriptional regulator compare
BPHYT_RS17685 -0.6 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS25270 -0.6 -1.2 multidrug MFS transporter compare
BPHYT_RS01340 -0.6 -1.9 ChrB domain-containing protein compare
BPHYT_RS25500 -0.6 -1.0 hypothetical protein compare
BPHYT_RS23880 -0.6 -1.5 sugar ABC transporter permease compare
BPHYT_RS02120 -0.6 -1.8 hypothetical protein compare
BPHYT_RS21005 -0.6 -1.6 asparaginase compare
BPHYT_RS35215 -0.6 -0.8 dehydrogenase compare
BPHYT_RS28155 -0.6 -1.9 hypothetical protein compare
BPHYT_RS22360 -0.6 -1.3 response regulator receiver compare
BPHYT_RS21215 -0.6 -0.8 Crp/Fnr family transcriptional regulator compare
BPHYT_RS36460 -0.6 -1.8 hypothetical protein compare
BPHYT_RS06080 -0.6 -1.3 endonuclease IV compare
BPHYT_RS18965 -0.6 -0.9 chemotaxis protein CheY compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in lb_nosalt experiments