Experiment set22IT048 for Pseudomonas fluorescens SBW25-INTG

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p-Coumaric acid 2 mM carbon source

Group: carbon source
Media: MME_noNitrogen_noCarbon + p-Coumaric acid (2 mM) + Ammonium chloride (10 mM), pH=7
Culturing: PseudoSBW25_INTG_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Joshua Elmore on 8-Mar-22
Media components: 9.1 mM Potassium phosphate dibasic trihydrate, 20 mM 3-(N-morpholino)propanesulfonic acid, 4.3 mM Sodium Chloride, 0.41 mM Magnesium Sulfate Heptahydrate, 0.07 mM Calcium chloride dihydrate, MME Trace Minerals (0.5 mg/L EDTA tetrasodium tetrahydrate salt, 2 mg/L Ferric chloride, 0.05 mg/L Boric Acid, 0.05 mg/L Zinc chloride, 0.03 mg/L copper (II) chloride dihydrate, 0.05 mg/L Manganese (II) chloride tetrahydrate, 0.05 mg/L Diammonium molybdate, 0.05 mg/L Cobalt chloride hexahydrate, 0.05 mg/L Nickel (II) chloride hexahydrate)

Specific Phenotypes

For 9 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For carbon source p-Coumaric acid across organisms

SEED Subsystems

Subsystem #Specific
ATP-dependent RNA helicases, bacterial 1
Cinnamic Acid Degradation 1
DNA repair, bacterial MutL-MutS system 1
Gentisare degradation 1
Isoleucine degradation 1
Leucine Degradation and HMG-CoA Metabolism 1
Phenylpropanoid compound degradation 1
Rubrerythrin 1
Salicylate and gentisate catabolism 1
Valine degradation 1
p-Hydroxybenzoate degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
2-oxoisovalerate decarboxylation to isobutanoyl-CoA 3 3 1
methyl tert-butyl ether degradation 10 4 1