Experiment set22IT038 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Trisodium citrate dihydrate 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS10765 -7.8 -35.8 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS18410 -7.7 -18.8 response regulator compare
PFLU_RS19015 -7.2 -39.0 anti-sigma factor compare
PFLU_RS06430 -5.6 -39.9 RNA polymerase sigma factor RpoS compare
PFLU_RS21530 -5.0 -38.8 transporter substrate-binding domain-containing protein compare
PFLU_RS28695 -4.9 -8.2 phosphoglycerate dehydrogenase compare
PFLU_RS29290 -4.8 -7.3 hypothetical protein compare
PFLU_RS20565 -4.5 -13.3 3-isopropylmalate dehydrogenase compare
PFLU_RS20575 -4.5 -8.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27365 -4.5 -9.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20580 -4.4 -10.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28535 -4.3 -14.3 dihydroxy-acid dehydratase compare
PFLU_RS25640 -4.3 -11.7 ketol-acid reductoisomerase compare
PFLU_RS27370 -4.2 -13.6 anthranilate phosphoribosyltransferase compare
PFLU_RS28165 -4.1 -11.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS28385 -4.1 -14.7 homoserine O-acetyltransferase compare
PFLU_RS24765 -4.1 -22.6 2-isopropylmalate synthase compare
PFLU_RS02490 -4.1 -12.8 phosphoserine phosphatase SerB compare
PFLU_RS00180 -4.1 -4.8 tryptophan synthase subunit beta compare
PFLU_RS22600 -4.0 -7.7 RNA polymerase sigma factor SigX compare
PFLU_RS23065 -4.0 -9.3 phosphate acyltransferase PlsX compare
PFLU_RS25645 -4.0 -2.7 acetolactate synthase small subunit compare
PFLU_RS01610 -3.9 -10.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01605 -3.8 -8.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29515 -3.8 -13.4 RidA family protein compare
PFLU_RS01620 -3.8 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS02275 -3.7 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS28390 -3.7 -12.5 methionine biosynthesis protein MetW compare
PFLU_RS00175 -3.6 -5.5 tryptophan synthase subunit alpha compare
PFLU_RS18505 -3.6 -6.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS12980 -3.6 -10.3 nitrite/sulfite reductase compare
PFLU_RS20540 -3.5 -12.3 phosphoribosylanthranilate isomerase compare
PFLU_RS01900 -3.4 -7.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20515 -3.4 -4.7 amidophosphoribosyltransferase compare
PFLU_RS28655 -3.4 -13.2 HAD family hydrolase compare
PFLU_RS22070 -3.4 -4.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02590 -3.4 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS04470 -3.3 -12.3 histidinol dehydrogenase compare
PFLU_RS20510 -3.3 -15.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29480 -3.3 -21.2 exodeoxyribonuclease III compare
PFLU_RS22740 -3.2 -3.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS07160 -3.2 -17.1 response regulator conserved
PFLU_RS23920 -3.2 -3.0 septation protein A compare
PFLU_RS24025 -3.1 -13.9 quinolinate synthase NadA compare
PFLU_RS08675 -3.1 -5.9 DsbE family thiol:disulfide interchange protein compare
PFLU_RS01625 -3.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS12975 -3.0 -6.6 DUF934 domain-containing protein compare
PFLU_RS03970 -2.9 -11.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS03770 -2.9 -15.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS07165 -2.9 -17.6 sensor histidine kinase conserved
PFLU_RS04465 -2.8 -10.4 ATP phosphoribosyltransferase compare
PFLU_RS23070 -2.7 -1.8 50S ribosomal protein L32 compare
PFLU_RS23305 -2.7 -11.0 arginine N-succinyltransferase compare
PFLU_RS03765 -2.6 -12.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS23235 -2.6 -5.4 Arc family DNA-binding protein compare
PFLU_RS08655 -2.4 -5.5 heme ABC transporter permease compare
PFLU_RS23310 -2.4 -9.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS09055 -2.4 -2.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS22520 -2.2 -5.7 GntR family transcriptional regulator compare
PFLU_RS07690 -2.2 -11.6 helix-turn-helix transcriptional regulator compare
PFLU_RS25360 -2.2 -7.3 glutamate 5-kinase compare
PFLU_RS22105 -2.2 -5.4 cysteine synthase CysM compare
PFLU_RS01895 -2.2 -6.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS20660 -2.1 -13.2 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS20290 -2.1 -3.6 integration host factor subunit alpha compare
PFLU_RS08660 -2.1 -4.8 heme exporter protein CcmD compare
PFLU_RS18670 -2.0 -1.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS13915 -2.0 -4.6 hypothetical protein compare
PFLU_RS08410 -2.0 -7.7 HTH-type transcriptional regulator CysB compare
PFLU_RS27640 -2.0 -2.8 alpha/beta fold hydrolase compare
PFLU_RS27475 -2.0 -5.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS04140 -1.9 -3.9 response regulator transcription factor compare
PFLU_RS08665 -1.9 -5.4 cytochrome c maturation protein CcmE compare
PFLU_RS24205 -1.9 -2.1 DNA binding protein compare
PFLU_RS25735 -1.9 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04165 -1.9 -7.1 cell division protein ZapE compare
PFLU_RS28965 -1.9 -9.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS08670 -1.9 -7.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS25800 -1.8 -7.2 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS07150 -1.8 -11.0 tripartite tricarboxylate transporter substrate binding protein conserved
PFLU_RS00510 -1.8 -12.8 CitMHS family transporter conserved
PFLU_RS18665 -1.8 -2.4 NADH-quinone oxidoreductase subunit L compare
PFLU_RS27630 -1.8 -5.5 dethiobiotin synthase compare
PFLU_RS21300 -1.8 -4.1 cysteine hydrolase compare
PFLU_RS08650 -1.7 -3.5 heme exporter protein CcmB compare
PFLU_RS30160 -1.7 -3.1 ParB/RepB/Spo0J family partition protein compare
PFLU_RS20955 -1.7 -3.1 DUF1028 domain-containing protein compare
PFLU_RS25740 -1.7 -4.5 polynucleotide adenylyltransferase PcnB compare
PFLU_RS25865 -1.6 -3.2 YhbY family RNA-binding protein compare
PFLU_RS14715 -1.6 -10.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS27650 -1.6 -11.3 biotin synthase BioB compare
PFLU_RS23130 -1.6 -7.8 response regulator transcription factor compare
PFLU_RS18640 -1.6 -2.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS28645 -1.6 -10.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS06055 -1.5 -3.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS01320 -1.5 -7.2 phosphoenolpyruvate carboxykinase compare
PFLU_RS27380 -1.4 -8.2 anthranilate synthase component I compare
PFLU_RS27645 -1.4 -9.4 8-amino-7-oxononanoate synthase compare
PFLU_RS25755 -1.4 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS13540 -1.4 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28195 -1.3 -9.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS00530 -1.3 -2.4 DUF2388 domain-containing protein compare
PFLU_RS02565 -1.3 -3.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS07225 -1.3 -9.9 L-aspartate oxidase compare
PFLU_RS21775 -1.3 -10.2 flagellar basal body M-ring protein FliF compare
PFLU_RS25205 -1.3 -4.8 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS22310 -1.3 -9.5 methyl-accepting chemotaxis protein compare
PFLU_RS01315 -1.3 -2.0 Hsp33 family molecular chaperone HslO compare
PFLU_RS25200 -1.3 -6.9 protoheme IX farnesyltransferase compare
PFLU_RS28650 -1.3 -4.7 RNA pyrophosphohydrolase compare
PFLU_RS14805 -1.3 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS18635 -1.3 -2.0 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS07725 -1.3 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS30515 -1.3 -3.9 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS21725 -1.3 -8.2 flagellar motor switch protein FliM compare
PFLU_RS24085 -1.2 -1.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21700 -1.2 -8.0 flagellar type III secretion system protein FliR compare
PFLU_RS29095 -1.2 -10.8 polyphosphate kinase 1 compare
PFLU_RS27375 -1.2 -4.0 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS08505 -1.2 -4.9 protease HtpX compare
PFLU_RS13035 -1.2 -2.8 cobalamin biosynthesis protein CobW compare
PFLU_RS18055 -1.2 -2.3 hydrolase compare
PFLU_RS18885 -1.2 -1.6 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS22095 -1.2 -8.7 GTP diphosphokinase compare
PFLU_RS15200 -1.2 -2.8 ABC transporter substrate-binding protein compare
PFLU_RS03665 -1.2 -4.5 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS25220 -1.2 -6.5 ubiquinol oxidase subunit II compare
PFLU_RS21770 -1.2 -8.3 flagellar motor switch protein FliG compare
PFLU_RS23380 -1.2 -1.8 HAD-IB family hydrolase compare
PFLU_RS17110 -1.2 -4.6 DUF58 domain-containing protein compare
PFLU_RS21670 -1.2 -8.3 flagellar biosynthesis protein FlhF compare
PFLU_RS05630 -1.1 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21765 -1.1 -7.8 flagellar assembly protein FliH compare
PFLU_RS21705 -1.1 -7.8 flagellar biosynthesis protein FliQ compare
PFLU_RS21710 -1.1 -7.4 flagellar type III secretion system pore protein FliP compare
PFLU_RS13050 -1.1 -4.3 VWA domain-containing protein compare
PFLU_RS22990 -1.1 -2.7 ADP-ribosylglycohydrolase compare
PFLU_RS07910 -1.1 -1.7 type 1 fimbrial protein compare
PFLU_RS19160 -1.1 -6.8 endopeptidase La compare
PFLU_RS08125 -1.1 -2.7 integration host factor subunit beta compare
PFLU_RS08540 -1.1 -5.3 ATP-binding protein compare
PFLU_RS27635 -1.1 -6.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS29750 -1.1 -3.0 phosphate signaling complex protein PhoU compare
PFLU_RS25595 -1.1 -1.4 exodeoxyribonuclease V subunit gamma compare
PFLU_RS30165 -1.1 -5.3 ParA family protein compare
PFLU_RS00460 -1.1 -8.1 glutamate/aspartate:proton symporter GltP compare
PFLU_RS13350 -1.1 -1.4 ParD-like family protein compare
PFLU_RS11980 -1.0 -4.5 precorrin-6A synthase (deacetylating) compare
PFLU_RS02975 -1.0 -4.3 precorrin-3B synthase compare
PFLU_RS24535 -1.0 -2.4 DUF3509 domain-containing protein compare
PFLU_RS04220 -1.0 -5.0 FadR family transcriptional regulator compare
PFLU_RS30420 -1.0 -3.1 hypothetical protein compare
PFLU_RS21675 -1.0 -8.6 flagellar biosynthesis protein FlhA compare
PFLU_RS16580 -1.0 -2.6 hypothetical protein compare
PFLU_RS25215 -1.0 -6.8 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS21780 -1.0 -3.6 flagellar hook-basal body complex protein FliE compare
PFLU_RS29810 -1.0 -6.3 LysR family transcriptional regulator compare
PFLU_RS24330 -1.0 -4.0 phosphogluconate dehydratase compare
PFLU_RS29310 -1.0 -1.0 accessory factor UbiK family protein compare
PFLU_RS21755 -1.0 -7.0 flagella biosynthesis chaperone FliJ compare
PFLU_RS01765 -1.0 -5.8 histidine utilization repressor compare
PFLU_RS08185 -1.0 -6.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS18655 -1.0 -0.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS02580 -1.0 -6.4 FtsH protease activity modulator HflK compare
PFLU_RS21760 -1.0 -8.0 flagellar protein export ATPase FliI compare
PFLU_RS13150 -1.0 -2.4 hypothetical protein compare
PFLU_RS18625 -0.9 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS19165 -0.9 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS14995 -0.9 -1.5 response regulator transcription factor compare
PFLU_RS05690 -0.9 -1.9 Grx4 family monothiol glutaredoxin compare
PFLU_RS15990 -0.9 -1.2 SDR family oxidoreductase compare
PFLU_RS26640 -0.9 -4.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS13045 -0.9 -3.9 AAA domain-containing protein compare
PFLU_RS21845 -0.9 -6.0 flagellar basal body P-ring protein FlgI compare
PFLU_RS02670 -0.9 -2.5 hypothetical protein compare
PFLU_RS24160 -0.9 -4.2 HAMP domain-containing protein compare
PFLU_RS22195 -0.9 -2.6 DEAD/DEAH box helicase compare
PFLU_RS01615 -0.9 -2.5 DUF2164 domain-containing protein compare
PFLU_RS14440 -0.9 -1.4 hypothetical protein compare
PFLU_RS29505 -0.9 -4.2 DNA-directed RNA polymerase subunit omega compare
PFLU_RS25875 -0.9 -2.6 transcription elongation factor GreA compare
PFLU_RS22250 -0.9 -2.4 hypothetical protein compare
PFLU_RS02050 -0.9 -7.4 NAD(P)-binding protein compare
PFLU_RS11380 -0.9 -0.9 sarcosine oxidase subunit delta compare
PFLU_RS21985 -0.9 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS03570 -0.9 -2.1 hypothetical protein compare
PFLU_RS01885 -0.9 -3.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS27465 -0.9 -2.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS28665 -0.9 -7.1 threonine ammonia-lyase, biosynthetic compare
PFLU_RS01910 -0.9 -1.2 sterol-binding protein compare
PFLU_RS19170 -0.9 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS02625 -0.9 -6.0 ribonuclease R compare
PFLU_RS17895 -0.9 -4.1 glycosyltransferase family 2 protein compare
PFLU_RS21665 -0.9 -3.5 MinD/ParA family protein compare
PFLU_RS00210 -0.9 -1.2 OsmC family protein compare
PFLU_RS21315 -0.9 -4.0 GTP cyclohydrolase I FolE compare
PFLU_RS21850 -0.9 -7.2 flagellar basal body L-ring protein FlgH compare
PFLU_RS26530 -0.9 -6.4 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS11850 -0.9 -1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS07255 -0.9 -2.4 sulfurtransferase TusA family protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Trisodium citrate dihydrate across organisms