Experiment set22IT034 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Hydroxybenzoic Acid 2 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -9.0 -8.5 response regulator compare
PFLU_RS10765 -8.8 -18.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS06430 -6.9 -28.7 RNA polymerase sigma factor RpoS compare
PFLU_RS29290 -6.7 -9.2 hypothetical protein compare
PFLU_RS19015 -6.5 -20.4 anti-sigma factor compare
PFLU_RS06765 -5.7 -4.0 4-carboxymuconolactone decarboxylase compare
PFLU_RS21530 -5.6 -30.6 transporter substrate-binding domain-containing protein compare
PFLU_RS06730 -5.2 -6.2 CoA-transferase subunit beta compare
PFLU_RS28695 -5.2 -3.6 phosphoglycerate dehydrogenase compare
PFLU_RS27640 -5.2 -3.0 alpha/beta fold hydrolase compare
PFLU_RS06735 -5.1 -3.5 3-oxoadipyl-CoA thiolase compare
PFLU_RS06740 -5.0 -3.4 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS06760 -4.9 -4.8 3-oxoadipate enol-lactonase compare
PFLU_RS06755 -4.9 -5.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS20575 -4.8 -5.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06725 -4.8 -6.5 CoA transferase subunit A compare
PFLU_RS06715 -4.7 -4.6 IclR family transcriptional regulator compare
PFLU_RS07435 -4.7 -9.0 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS28385 -4.7 -8.4 homoserine O-acetyltransferase compare
PFLU_RS02490 -4.6 -7.6 phosphoserine phosphatase SerB compare
PFLU_RS04465 -4.5 -5.3 ATP phosphoribosyltransferase compare
PFLU_RS20565 -4.5 -9.1 3-isopropylmalate dehydrogenase compare
PFLU_RS25640 -4.4 -6.0 ketol-acid reductoisomerase compare
PFLU_RS29515 -4.3 -8.3 RidA family protein compare
PFLU_RS28390 -4.3 -7.8 methionine biosynthesis protein MetW compare
PFLU_RS20580 -4.3 -6.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20510 -4.3 -10.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24765 -4.3 -17.9 2-isopropylmalate synthase compare
PFLU_RS02590 -4.3 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS31530 -4.3 -1.4 transposase compare
PFLU_RS01605 -4.3 -4.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS07430 -4.3 -11.0 helix-turn-helix domain-containing protein compare
PFLU_RS27370 -4.2 -10.2 anthranilate phosphoribosyltransferase compare
PFLU_RS28535 -4.2 -10.2 dihydroxy-acid dehydratase compare
PFLU_RS27365 -4.1 -8.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -4.1 -6.8 phosphoribosylanthranilate isomerase compare
PFLU_RS03970 -4.1 -9.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS29875 -4.0 -15.0 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01900 -4.0 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01895 -4.0 -4.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25360 -4.0 -5.4 glutamate 5-kinase compare
PFLU_RS27690 -3.9 -3.2 response regulator compare
PFLU_RS29880 -3.9 -13.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS01610 -3.9 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01620 -3.8 -5.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04470 -3.8 -8.1 histidinol dehydrogenase compare
PFLU_RS12975 -3.8 -4.5 DUF934 domain-containing protein compare
PFLU_RS28165 -3.8 -9.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS24025 -3.7 -12.0 quinolinate synthase NadA compare
PFLU_RS25645 -3.6 -2.5 acetolactate synthase small subunit compare
PFLU_RS27650 -3.6 -14.8 biotin synthase BioB compare
PFLU_RS29885 -3.6 -11.7 LysR family transcriptional regulator compare
PFLU_RS07695 -3.6 -3.5 beta-N-acetylhexosaminidase compare
PFLU_RS28655 -3.6 -6.9 HAD family hydrolase compare
PFLU_RS29095 -3.5 -23.9 polyphosphate kinase 1 compare
PFLU_RS12980 -3.5 -9.1 nitrite/sulfite reductase compare
PFLU_RS23305 -3.5 -7.4 arginine N-succinyltransferase compare
PFLU_RS06745 -3.4 -5.7 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS00175 -3.4 -3.4 tryptophan synthase subunit alpha compare
PFLU_RS03570 -3.4 -3.3 hypothetical protein compare
PFLU_RS23310 -3.3 -4.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS00180 -3.3 -5.9 tryptophan synthase subunit beta compare
PFLU_RS20515 -3.3 -4.5 amidophosphoribosyltransferase compare
PFLU_RS01995 -3.2 -6.2 malate dehydrogenase compare
PFLU_RS23235 -3.2 -5.2 Arc family DNA-binding protein compare
PFLU_RS19375 -3.2 -12.3 branched-chain amino acid aminotransferase compare
PFLU_RS27305 -3.2 -10.3 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS28195 -3.1 -15.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS08125 -3.0 -4.6 integration host factor subunit beta compare
PFLU_RS04075 -3.0 -1.3 hypothetical protein compare
PFLU_RS27645 -2.9 -14.7 8-amino-7-oxononanoate synthase compare
PFLU_RS27440 -2.9 -6.6 nucleotidyltransferase family protein compare
PFLU_RS06815 -2.9 -9.2 TetR family transcriptional regulator compare
PFLU_RS27635 -2.9 -9.8 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS03240 -2.8 -14.8 copper-translocating P-type ATPase compare
PFLU_RS07225 -2.8 -16.7 L-aspartate oxidase compare
PFLU_RS22835 -2.8 -6.4 amidotransferase compare
PFLU_RS18505 -2.8 -9.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS27445 -2.8 -14.7 phosphotransferase compare
PFLU_RS01625 -2.7 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28645 -2.7 -13.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07690 -2.6 -10.3 helix-turn-helix transcriptional regulator compare
PFLU_RS26290 -2.6 -1.2 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS05020 -2.6 -2.1 DUF1120 domain-containing protein compare
PFLU_RS07640 -2.6 -8.9 universal stress protein compare
PFLU_RS04385 -2.6 -7.4 RNase adapter RapZ compare
PFLU_RS01965 -2.6 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS07650 -2.5 -11.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS08410 -2.5 -6.9 HTH-type transcriptional regulator CysB compare
PFLU_RS01320 -2.4 -7.8 phosphoenolpyruvate carboxykinase compare
PFLU_RS08065 -2.4 -8.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS22070 -2.4 -3.9 phosphoribosylglycinamide formyltransferase compare
PFLU_RS22520 -2.4 -4.2 GntR family transcriptional regulator compare
PFLU_RS04220 -2.4 -8.1 FadR family transcriptional regulator compare
PFLU_RS02980 -2.4 -2.2 precorrin-8X methylmutase compare
PFLU_RS21360 -2.3 -1.8 MarR family transcriptional regulator compare
PFLU_RS25715 -2.3 -4.1 RNA polymerase-binding protein DksA compare
PFLU_RS02975 -2.3 -8.1 precorrin-3B synthase compare
PFLU_RS25750 -2.3 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS19170 -2.3 -1.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS09055 -2.2 -1.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS29750 -2.2 -5.0 phosphate signaling complex protein PhoU compare
PFLU_RS06055 -2.2 -1.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS27630 -2.2 -5.8 dethiobiotin synthase compare
PFLU_RS18645 -2.1 -1.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS18395 -2.1 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS22990 -2.1 -3.9 ADP-ribosylglycohydrolase compare
PFLU_RS25800 -2.1 -5.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS06750 -2.1 -12.0 MFS transporter compare
PFLU_RS22735 -2.1 -9.7 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS00310 -2.0 -1.6 twin transmembrane helix small protein compare
PFLU_RS22095 -2.0 -12.6 GTP diphosphokinase compare
PFLU_RS17750 -2.0 -2.3 pirin family protein compare
PFLU_RS28965 -2.0 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS04325 -2.0 -9.5 ribonuclease G compare
PFLU_RS23730 -2.0 -10.4 MurR/RpiR family transcriptional regulator compare
PFLU_RS11980 -2.0 -6.0 precorrin-6A synthase (deacetylating) compare
PFLU_RS01955 -2.0 -6.6 DUF971 domain-containing protein compare
PFLU_RS22105 -2.0 -4.6 cysteine synthase CysM compare
PFLU_RS21825 -2.0 -8.9 ketoacyl-ACP synthase III compare
PFLU_RS04165 -2.0 -6.0 cell division protein ZapE compare
PFLU_RS25225 -1.9 -5.8 disulfide bond formation protein B compare
PFLU_RS13915 -1.9 -4.4 hypothetical protein compare
PFLU_RS11525 -1.9 -3.3 GntR family transcriptional regulator compare
PFLU_RS02965 -1.9 -8.9 cobalt-precorrin-6A reductase compare
PFLU_RS21780 -1.9 -5.6 flagellar hook-basal body complex protein FliE compare
PFLU_RS13085 -1.8 -3.7 DUF1315 family protein compare
PFLU_RS16785 -1.8 -2.7 GAF domain-containing protein compare
PFLU_RS25735 -1.8 -1.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02970 -1.8 -5.9 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS00435 -1.8 -12.0 PAS domain-containing protein compare
PFLU_RS20290 -1.8 -1.8 integration host factor subunit alpha compare
PFLU_RS04835 -1.8 -1.3 hypothetical protein compare
PFLU_RS18665 -1.8 -1.2 NADH-quinone oxidoreductase subunit L compare
PFLU_RS13895 -1.8 -1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS23430 -1.8 -5.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS27475 -1.8 -3.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS18670 -1.8 -1.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS13050 -1.8 -5.3 VWA domain-containing protein compare
PFLU_RS00415 -1.7 -1.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS14550 -1.7 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS18640 -1.7 -1.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS15745 -1.7 -2.6 type II secretion system ATPase GspE compare
PFLU_RS22010 -1.7 -5.8 threonine-phosphate decarboxylase compare
PFLU_RS29310 -1.7 -1.1 accessory factor UbiK family protein compare
PFLU_RS00245 -1.7 -7.1 YheV family putative metal-binding protein compare
PFLU_RS23680 -1.7 -9.4 long-chain fatty acid--CoA ligase compare
PFLU_RS21965 -1.7 -8.5 transporter compare
PFLU_RS21300 -1.7 -3.9 cysteine hydrolase compare
PFLU_RS22630 -1.7 -11.9 phosphoenolpyruvate synthase compare
PFLU_RS28315 -1.7 -1.1 response regulator compare
PFLU_RS13040 -1.7 -10.3 cobaltochelatase subunit CobN compare
PFLU_RS01960 -1.7 -1.1 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS13015 -1.7 -4.4 precorrin-4 C(11)-methyltransferase compare
PFLU_RS27380 -1.7 -9.0 anthranilate synthase component I compare
PFLU_RS25925 -1.7 -2.4 RnfH family protein compare
PFLU_RS01765 -1.7 -7.5 histidine utilization repressor compare
PFLU_RS27620 -1.7 -9.5 acyl-CoA dehydrogenase compare
PFLU_RS00555 -1.7 -7.5 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
PFLU_RS02985 -1.7 -8.2 precorrin-2 C(20)-methyltransferase compare
PFLU_RS13000 -1.7 -10.6 methionine synthase compare
PFLU_RS23265 -1.7 -5.3 aspartate kinase compare
PFLU_RS05210 -1.7 -1.7 HU family DNA-binding protein compare
PFLU_RS05655 -1.6 -2.5 DeoR/GlpR family transcriptional regulator compare
PFLU_RS17265 -1.6 -1.4 hypothetical protein compare
PFLU_RS31185 -1.6 -4.7 hypothetical protein compare
PFLU_RS17060 -1.6 -1.6 monooxygenase compare
PFLU_RS18635 -1.6 -1.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS26365 -1.6 -11.4 TetR/AcrR family transcriptional regulator conserved
PFLU_RS18530 -1.6 -3.4 DNA translocase FtsK compare
PFLU_RS25815 -1.6 -2.1 transcription termination/antitermination protein NusA compare
PFLU_RS05630 -1.6 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS07665 -1.6 -1.8 type I DNA topoisomerase compare
PFLU_RS19165 -1.6 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS30030 -1.6 -0.9 membrane protein compare
PFLU_RS29735 -1.6 -8.2 HlyC/CorC family transporter compare
PFLU_RS02365 -1.6 -5.8 glycosyltransferase compare
PFLU_RS07970 -1.6 -8.3 LOG family protein compare
PFLU_RS12635 -1.6 -2.1 conjugal transfer protein TraR compare
PFLU_RS07525 -1.5 -2.0 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS21985 -1.5 -3.4 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS08505 -1.5 -4.8 protease HtpX compare
PFLU_RS21830 -1.5 -11.9 flagellar hook-associated protein 3 compare
PFLU_RS18615 -1.5 -1.0 NADH-quinone oxidoreductase subunit A compare
PFLU_RS12580 -1.5 -6.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS22015 -1.5 -7.8 cobalamin biosynthesis protein compare
PFLU_RS01665 -1.5 -2.4 glutaredoxin 3 compare
PFLU_RS09500 -1.5 -1.3 hypothetical protein compare
PFLU_RS26545 -1.5 -6.7 sel1 repeat family protein compare
PFLU_RS24475 -1.5 -11.2 AmpG family muropeptide MFS transporter compare
PFLU_RS21765 -1.5 -7.8 flagellar assembly protein FliH compare
PFLU_RS20790 -1.5 -2.6 heme-binding protein compare
PFLU_RS21755 -1.5 -7.6 flagella biosynthesis chaperone FliJ compare
PFLU_RS21820 -1.5 -8.5 flagellin compare
PFLU_RS18625 -1.5 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS21990 -1.5 -5.5 alpha-ribazole phosphatase family protein compare
PFLU_RS27375 -1.5 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS00275 -1.5 -5.7 carbonic anhydrase compare
PFLU_RS01390 -1.5 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS22000 -1.5 -5.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Hydroxybenzoic Acid across organisms