Experiment set22IT032 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4187 -8.7 -11.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3661 -8.6 -8.4 hypothetical protein compare
Pf6N2E2_3264 -6.2 -7.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2823 -5.5 -3.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5291 -5.5 -25.9 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_5316 -5.5 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2320 -5.4 -15.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_71 -5.4 -6.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5069 -5.4 -9.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3826 -5.2 -6.8 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2574 -5.1 -3.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_5242 -5.0 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3630 -4.8 -8.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4803 -4.7 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4825 -4.7 -11.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4826 -4.7 -9.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2318 -4.6 -23.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4153 -4.5 -4.3 Sensory box histidine kinase compare
Pf6N2E2_3839 -4.5 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3253 -4.3 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4638 -4.2 -2.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3984 -4.1 -14.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5068 -4.1 -13.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5086 -4.1 -1.3 hypothetical protein compare
Pf6N2E2_5150 -4.0 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_64 -4.0 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2825 -4.0 -6.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3252 -4.0 -9.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5190 -3.9 -8.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4597 -3.9 -10.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5338 -3.8 -26.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5499 -3.8 -1.2 hypothetical protein compare
Pf6N2E2_3752 -3.8 -19.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5177 -3.7 -12.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5339 -3.7 -22.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5337 -3.7 -18.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3782 -3.7 -5.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3786 -3.6 -9.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_3303 -3.6 -6.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4279 -3.6 -12.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5006 -3.5 -2.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2317 -3.4 -8.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3611 -3.4 -2.9 HflC protein compare
Pf6N2E2_4278 -3.4 -12.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4596 -3.4 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5160 -3.3 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3842 -3.2 -6.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_96 -3.2 -4.4 FIG011065: hypothetical protein compare
Pf6N2E2_4305 -3.1 -1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_5175 -3.1 -9.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3783 -3.1 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3665 -3.1 -1.4 serine/threonine protein kinase compare
Pf6N2E2_2552 -3.1 -10.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2258 -3.0 -11.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_1636 -3.0 -7.6 Ferrichrome-iron receptor compare
Pf6N2E2_3096 -3.0 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2962 -3.0 -1.6 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_601 -3.0 -3.8 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_3825 -3.0 -4.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_1014 -2.9 -2.1 Nitrate/nitrite transporter compare
Pf6N2E2_4048 -2.9 -7.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2488 -2.9 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4394 -2.8 -2.7 Putrescine utilization regulator compare
Pf6N2E2_2824 -2.8 -10.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3841 -2.8 -6.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3037 -2.8 -11.8 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3658 -2.7 -12.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_295 -2.7 -2.6 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_4277 -2.7 -11.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3751 -2.7 -10.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3932 -2.7 -4.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2189 -2.7 -7.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3072 -2.7 -10.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4047 -2.7 -5.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1989 -2.7 -2.1 hypothetical protein compare
Pf6N2E2_3835 -2.6 -4.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3664 -2.6 -10.6 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3785 -2.6 -4.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_971 -2.5 -1.3 hypothetical protein compare
Pf6N2E2_1656 -2.5 -1.3 hypothetical protein compare
Pf6N2E2_4564 -2.5 -7.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_66 -2.5 -8.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5394 -2.5 -3.5 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_1176 -2.4 -4.2 Mll2356 protein compare
Pf6N2E2_5178 -2.4 -5.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2013 -2.4 -0.7 hypothetical protein compare
Pf6N2E2_2225 -2.4 -1.2 FIG00953489: hypothetical protein compare
Pf6N2E2_2510 -2.4 -2.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_77 -2.4 -4.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_6164 -2.4 -1.8 tRNA-Val-TAC compare
Pf6N2E2_5780 -2.4 -4.8 Periplasmic protease compare
Pf6N2E2_4121 -2.3 -4.7 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_2899 -2.3 -6.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3373 -2.3 -2.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1534 -2.3 -1.0 Probable transmembrane protein compare
Pf6N2E2_2506 -2.3 -13.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2753 -2.3 -5.0 HtrA protease/chaperone protein compare
Pf6N2E2_2316 -2.3 -8.0 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_4584 -2.3 -6.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2390 -2.3 -1.9 FIG00959101: hypothetical protein compare
Pf6N2E2_5785 -2.3 -1.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4369 -2.3 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3659 -2.2 -7.7 Protein fixF compare
Pf6N2E2_2755 -2.2 -2.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3940 -2.2 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3248 -2.2 -4.2 Probable transmembrane protein compare
Pf6N2E2_3610 -2.2 -2.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2646 -2.2 -1.1 FIG00953416: hypothetical protein compare
Pf6N2E2_5902 -2.2 -2.1 hypothetical protein compare
Pf6N2E2_2277 -2.2 -1.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_658 -2.1 -9.4 sensor histidine kinase compare
Pf6N2E2_1034 -2.1 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5176 -2.1 -5.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2885 -2.1 -6.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2201 -2.1 -3.9 Transmembrane regulator protein PrtR compare
Pf6N2E2_817 -2.1 -8.5 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_3151 -2.1 -4.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2473 -2.1 -2.5 Major outer membrane lipoprotein I compare
Pf6N2E2_4276 -2.1 -6.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1694 -2.1 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5103 -2.1 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4556 -2.0 -7.4 FIG00953078: hypothetical protein compare
Pf6N2E2_5219 -2.0 -7.0 FIG140336: TPR domain protein compare
Pf6N2E2_3533 -2.0 -3.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_361 -2.0 -3.6 Peptide ABC transporter, permease protein compare
Pf6N2E2_1312 -2.0 -2.3 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_5704 -1.9 -6.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1758 -1.9 -1.8 Transcriptional regulator, MarR family compare
Pf6N2E2_4743 -1.9 -0.6 hypothetical protein compare
Pf6N2E2_5571 -1.9 -1.3 hypothetical protein compare
Pf6N2E2_5534 -1.9 -5.3 FIG000859: hypothetical protein YebC compare
Pf6N2E2_2465 -1.9 -4.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2073 -1.9 -6.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4162 -1.9 -1.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_63 -1.9 -2.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5494 -1.9 -3.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5520 -1.9 -7.3 Sensory box histidine kinase compare
Pf6N2E2_5579 -1.9 -5.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_75 -1.9 -3.6 Colicin V production protein compare
Pf6N2E2_2059 -1.9 -1.8 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3908 -1.9 -2.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4763 -1.9 -7.2 Biotin synthesis protein BioC compare
Pf6N2E2_2513 -1.8 -4.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1441 -1.8 -1.6 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_302 -1.8 -5.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2509 -1.8 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5720 -1.8 -5.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_605 -1.8 -2.3 FIG002465: BNR repeat protein compare
Pf6N2E2_4014 -1.8 -7.3 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_2384 -1.8 -3.7 CmpX compare
Pf6N2E2_2017 -1.8 -1.9 DNA-binding protein compare
Pf6N2E2_4372 -1.8 -3.5 FIG00460773: hypothetical protein compare
Pf6N2E2_4889 -1.8 -8.2 Putative transport protein compare
Pf6N2E2_3406 -1.8 -2.2 putative ABC transporter ATP-binding protein compare
Pf6N2E2_3969 -1.7 -0.7 Membrane-fusion protein compare
Pf6N2E2_300 -1.7 -2.9 CrcB protein compare
Pf6N2E2_4422 -1.7 -1.8 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_3941 -1.7 -1.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1701 -1.7 -2.7 ABC transporter ATP-binding protein compare
Pf6N2E2_2062 -1.7 -1.8 FIG00955561: hypothetical protein compare
Pf6N2E2_5170 -1.7 -9.4 FIG00955330: hypothetical protein compare
Pf6N2E2_3603 -1.7 -3.9 FIG003573: hypothetical protein compare
Pf6N2E2_3170 -1.7 -7.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4797 -1.7 -0.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5252 -1.7 -3.1 FIG00956396: hypothetical protein compare
Pf6N2E2_4585 -1.6 -9.9 Cell division protein FtsX compare
Pf6N2E2_1869 -1.6 -4.0 hypothetical protein compare
Pf6N2E2_5816 -1.6 -1.0 Smr domain protein compare
Pf6N2E2_5727 -1.6 -4.2 FIG00955360: hypothetical protein compare
Pf6N2E2_4993 -1.6 -2.3 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3534 -1.6 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4353 -1.6 -4.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1672 -1.6 -5.5 hypothetical protein compare
Pf6N2E2_2117 -1.6 -10.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_4824 -1.6 -4.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_3807 -1.6 -4.3 Histidine utilization repressor compare
Pf6N2E2_664 -1.6 -1.9 Acetoin catabolism protein X compare
Pf6N2E2_3190 -1.5 -4.0 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_1434 -1.5 -1.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_6093 -1.5 -2.2 hypothetical protein compare
Pf6N2E2_434 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_2296 -1.5 -2.8 FIG00954767: hypothetical protein compare
Pf6N2E2_2706 -1.5 -3.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5156 -1.5 -1.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2447 -1.5 -4.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3505 -1.5 -0.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2827 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_3260 -1.5 -3.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5476 -1.5 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1821 -1.5 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3679 -1.5 -4.2 Protein involved in catabolism of external DNA compare
Pf6N2E2_4562 -1.5 -2.3 L-cystine uptake protein TcyP compare
Pf6N2E2_2007 -1.5 -2.4 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_264 -1.5 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_4362 -1.5 -1.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5943 -1.5 -3.3 hypothetical protein compare
Pf6N2E2_3770 -1.5 -1.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4205 -1.5 -4.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1875 -1.4 -2.0 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3876 -1.4 -3.3 Agmatine deiminase (EC 3.5.3.12) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms