Experiment set22IT031 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -7.4 -5.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3661 -7.1 -12.9 hypothetical protein compare
Pf6N2E2_4187 -6.7 -8.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3782 -5.9 -8.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.7 -7.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3826 -5.6 -6.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5316 -5.5 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_64 -5.3 -3.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2574 -5.2 -2.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_5291 -5.1 -26.3 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2823 -5.1 -4.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5242 -5.1 -3.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2320 -5.0 -11.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_71 -4.9 -6.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2318 -4.7 -23.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5069 -4.7 -7.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3751 -4.6 -14.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3253 -4.6 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3842 -4.5 -7.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3841 -4.4 -3.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3752 -4.3 -22.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3786 -4.3 -10.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_5190 -4.3 -7.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4638 -4.2 -2.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_77 -4.2 -6.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4826 -4.2 -7.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3303 -4.2 -6.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2282 -4.2 -2.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5177 -4.1 -13.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5339 -4.1 -20.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_66 -4.1 -12.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5527 -4.1 -2.5 Cold shock protein CspC compare
Pf6N2E2_4825 -4.0 -10.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2753 -4.0 -5.3 HtrA protease/chaperone protein compare
Pf6N2E2_5338 -4.0 -25.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -3.9 -18.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4278 -3.9 -13.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2825 -3.8 -6.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2317 -3.8 -8.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5160 -3.8 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4596 -3.8 -9.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5068 -3.7 -13.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2824 -3.6 -10.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3252 -3.6 -9.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5150 -3.6 -7.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3839 -3.5 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3984 -3.5 -12.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3940 -3.4 -9.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2552 -3.4 -10.4 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4279 -3.4 -11.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4597 -3.3 -7.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4803 -3.2 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2073 -3.2 -7.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3037 -3.2 -13.5 RNA polymerase sigma factor RpoS compare
Pf6N2E2_4153 -3.2 -4.2 Sensory box histidine kinase compare
Pf6N2E2_4564 -3.2 -7.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5494 -3.1 -6.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3630 -3.1 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5175 -3.1 -10.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2962 -3.0 -1.5 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4277 -3.0 -11.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4047 -3.0 -5.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5176 -3.0 -6.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3072 -3.0 -11.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_3641 -2.9 -3.1 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_1636 -2.9 -8.4 Ferrichrome-iron receptor compare
Pf6N2E2_5006 -2.8 -6.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2885 -2.8 -8.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3658 -2.8 -12.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3373 -2.8 -2.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2201 -2.8 -4.6 Transmembrane regulator protein PrtR compare
Pf6N2E2_3932 -2.8 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_971 -2.7 -1.3 hypothetical protein compare
Pf6N2E2_4048 -2.7 -7.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_1656 -2.7 -1.3 hypothetical protein compare
Pf6N2E2_5523 -2.7 -1.8 Small-conductance mechanosensitive channel compare
Pf6N2E2_96 -2.6 -4.2 FIG011065: hypothetical protein compare
Pf6N2E2_3666 -2.5 -4.5 InaA protein compare
Pf6N2E2_302 -2.5 -4.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4773 -2.5 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_6063 -2.5 -9.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2258 -2.5 -8.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5780 -2.5 -5.5 Periplasmic protease compare
Pf6N2E2_4276 -2.5 -6.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3151 -2.4 -7.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2899 -2.4 -5.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_338 -2.4 -0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_1534 -2.4 -1.0 Probable transmembrane protein compare
Pf6N2E2_63 -2.4 -5.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5816 -2.4 -0.9 Smr domain protein compare
Pf6N2E2_3300 -2.4 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3248 -2.4 -5.3 Probable transmembrane protein compare
Pf6N2E2_2316 -2.4 -8.5 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_4369 -2.3 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3664 -2.3 -11.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5520 -2.3 -5.7 Sensory box histidine kinase compare
Pf6N2E2_2189 -2.3 -8.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3659 -2.3 -10.5 Protein fixF compare
Pf6N2E2_2755 -2.3 -3.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_521 -2.3 -3.1 hypothetical protein compare
Pf6N2E2_2080 -2.2 -2.0 hypothetical protein compare
Pf6N2E2_2510 -2.2 -3.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5505 -2.2 -1.0 hypothetical protein compare
Pf6N2E2_5534 -2.2 -4.2 FIG000859: hypothetical protein YebC compare
Pf6N2E2_2506 -2.2 -12.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3834 -2.2 -6.6 Lipoprotein NlpD compare
Pf6N2E2_1966 -2.2 -2.3 SAM-dependent methyltransferases compare
Pf6N2E2_5219 -2.2 -8.3 FIG140336: TPR domain protein compare
Pf6N2E2_2688 -2.1 -2.0 YD repeat protein compare
Pf6N2E2_4394 -2.1 -4.4 Putrescine utilization regulator compare
Pf6N2E2_3785 -2.1 -3.1 Twin-arginine translocation protein TatB compare
Pf6N2E2_5955 -2.1 -3.7 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_3825 -2.1 -2.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3835 -2.1 -4.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5103 -2.1 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_817 -2.1 -8.3 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_3170 -2.1 -6.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3198 -2.0 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3617 -2.0 -5.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5579 -2.0 -6.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3132 -2.0 -3.3 FIG00954548: hypothetical protein compare
Pf6N2E2_178 -2.0 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_425 -1.9 -2.7 FIG00957304: hypothetical protein compare
Pf6N2E2_4372 -1.9 -3.4 FIG00460773: hypothetical protein compare
Pf6N2E2_4743 -1.9 -0.5 hypothetical protein compare
Pf6N2E2_5703 -1.9 -4.6 outer membrane protein H1 compare
Pf6N2E2_4889 -1.9 -7.5 Putative transport protein compare
Pf6N2E2_75 -1.9 -3.3 Colicin V production protein compare
Pf6N2E2_2707 -1.9 -6.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2440 -1.9 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1968 -1.9 -2.8 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_2129 -1.9 -2.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2447 -1.9 -4.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2465 -1.9 -6.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2863 -1.8 -5.6 Gluconate permease compare
Pf6N2E2_1870 -1.8 -2.1 hypothetical protein compare
Pf6N2E2_4584 -1.8 -4.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3134 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_658 -1.8 -7.6 sensor histidine kinase compare
Pf6N2E2_1085 -1.8 -1.7 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_3969 -1.8 -0.7 Membrane-fusion protein compare
Pf6N2E2_3833 -1.7 -4.0 hypothetical protein compare
Pf6N2E2_2312 -1.7 -1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4298 -1.7 -2.2 Uncharacterized protein ImpB compare
Pf6N2E2_2586 -1.7 -1.3 Hpt domain protein compare
Pf6N2E2_1354 -1.7 -2.7 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_4824 -1.7 -4.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_74 -1.7 -2.6 DedD protein compare
Pf6N2E2_4025 -1.7 -0.6 hypothetical protein compare
Pf6N2E2_813 -1.7 -1.1 Response regulator compare
Pf6N2E2_3612 -1.7 -2.3 HflK protein compare
Pf6N2E2_3534 -1.7 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2675 -1.7 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1450 -1.6 -1.6 FIG00960438: hypothetical protein compare
Pf6N2E2_4797 -1.6 -0.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4392 -1.6 -1.1 Translation initiation inhibitor compare
Pf6N2E2_3610 -1.6 -2.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5727 -1.6 -4.6 FIG00955360: hypothetical protein compare
Pf6N2E2_2111 -1.6 -3.4 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_1165 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_2864 -1.6 -1.7 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4761 -1.6 -6.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4014 -1.6 -5.1 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_2074 -1.6 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5237 -1.6 -2.6 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4548 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_1672 -1.6 -6.7 hypothetical protein compare
Pf6N2E2_478 -1.6 -2.7 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_4121 -1.6 -3.1 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_460 -1.6 -3.1 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_4545 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_3505 -1.5 -0.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1776 -1.5 -1.5 Chemotaxis protein CheD compare
Pf6N2E2_3908 -1.5 -3.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2281 -1.5 -3.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_5170 -1.5 -8.9 FIG00955330: hypothetical protein compare
Pf6N2E2_3096 -1.5 -0.6 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4999 -1.5 -6.8 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_1989 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_5156 -1.5 -1.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3770 -1.5 -1.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_5794 -1.5 -2.3 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3386 -1.5 -4.0 hypothetical protein compare
Pf6N2E2_552 -1.5 -1.2 Uncharacterized protein ImpF compare
Pf6N2E2_3260 -1.5 -3.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3171 -1.5 -0.8 hypothetical protein compare
Pf6N2E2_2007 -1.5 -3.0 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_4414 -1.5 -2.1 FIG00953808: hypothetical protein compare
Pf6N2E2_146 -1.5 -2.0 Transcriptional regulator, MarR family compare
Pf6N2E2_4464 -1.5 -2.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_5750 -1.5 -2.6 Transcriptional regulator, MarR family compare
Pf6N2E2_4044 -1.5 -4.4 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_601 -1.4 -2.5 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_3820 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_4272 -1.4 -3.6 putative membrane protein compare
Pf6N2E2_5014 -1.4 -0.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3328 -1.4 -1.0 transcriptional regulator compare
Pf6N2E2_2513 -1.4 -3.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_424 -1.4 -3.6 Decarboxylase family protein compare
Pf6N2E2_4416 -1.4 -2.3 Tyrosine recombinase XerC compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms