Experiment set22IT031 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 1mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_384 +1.9 2.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_180 +1.9 8.3 Transcriptional regulator, MerR family compare
Pf6N2E2_4478 +1.8 6.6 FIG019278: hypothetical protein compare
Pf6N2E2_1404 +1.5 3.3 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_2390 +1.4 2.1 FIG00959101: hypothetical protein compare
Pf6N2E2_1876 +1.4 2.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_5862 +1.4 3.8 Lipoprotein, putative compare
Pf6N2E2_2367 +1.4 1.9 hypothetical protein compare
Pf6N2E2_6090 +1.3 1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2425 +1.3 2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2503 +1.3 1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2591 +1.3 5.1 Flagellar assembly protein FliH compare
Pf6N2E2_1836 +1.3 3.4 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_2501 +1.3 2.3 hypothetical protein compare
Pf6N2E2_2175 +1.3 2.4 Transcriptional regulator, RpiR family compare
Pf6N2E2_1747 +1.3 2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4678 +1.2 1.8 hypothetical protein compare
Pf6N2E2_5756 +1.2 2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4067 +1.2 6.7 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_2059 +1.2 2.1 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1283 +1.2 2.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2536 +1.1 2.1 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_4570 +1.1 3.7 Cation/multidrug efflux pump compare
Pf6N2E2_5694 +1.1 5.9 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_434 +1.1 1.5 hypothetical protein compare
Pf6N2E2_2549 +1.1 1.5 hypothetical protein compare
Pf6N2E2_5714 +1.1 1.6 Flavoprotein WrbA compare
Pf6N2E2_1675 +1.0 7.1 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_6059 +1.0 3.0 FIG008443: hypothetical protein compare
Pf6N2E2_1674 +1.0 6.2 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_5766 +1.0 2.4 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_2594 +1.0 6.2 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_4074 +1.0 9.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3271 +1.0 1.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4057 +1.0 1.3 lipoprotein, putative compare
Pf6N2E2_4148 +1.0 8.8 Glutamate-aspartate carrier protein compare
Pf6N2E2_1886 +1.0 0.8 hypothetical protein compare
Pf6N2E2_3761 +1.0 7.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1694 +1.0 1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2459 +0.9 1.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_5225 +0.9 6.1 Lipid A 3-O-deacylase compare
Pf6N2E2_2593 +0.9 4.1 Flagellar M-ring protein FliF compare
Pf6N2E2_2592 +0.9 3.5 Flagellar motor switch protein FliG compare
Pf6N2E2_5845 +0.9 5.6 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_1504 +0.9 2.4 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_624 +0.9 3.0 hypothetical protein PA3071 compare
Pf6N2E2_395 +0.9 2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2406 +0.9 5.1 Periplasmic binding protein compare
Pf6N2E2_4715 +0.9 2.1 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_2519 +0.9 1.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_2605 +0.9 7.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5846 +0.9 7.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2573 +0.9 5.0 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_687 +0.9 1.8 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_4075 +0.9 4.8 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2590 +0.9 6.3 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_942 +0.9 1.7 Mll6465 protein compare
Pf6N2E2_319 +0.9 3.5 DUF1850 domain-containing protein compare
Pf6N2E2_2284 +0.9 1.2 Cell division inhibitor-related protein compare
Pf6N2E2_136 +0.9 2.0 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_647 +0.9 2.2 General secretion pathway protein G compare
Pf6N2E2_762 +0.8 4.3 FIG00960186: hypothetical protein compare
Pf6N2E2_1236 +0.8 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_5243 +0.8 1.1 hypothetical protein compare
Pf6N2E2_3179 +0.8 1.5 FIG021952: putative membrane protein compare
Pf6N2E2_1343 +0.8 2.1 Transcriptional regulator compare
Pf6N2E2_5691 +0.8 5.8 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_3206 +0.8 1.3 hypothetical protein compare
Pf6N2E2_2387 +0.8 2.5 Ribonuclease E inhibitor RraA compare
Pf6N2E2_2417 +0.8 1.6 Sensor histidine kinase compare
Pf6N2E2_2225 +0.8 0.8 FIG00953489: hypothetical protein compare
Pf6N2E2_187 +0.8 3.9 Urea ABC transporter, ATPase protein UrtE compare
Pf6N2E2_1577 +0.8 1.2 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_3293 +0.8 2.1 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_260 +0.8 2.4 Regulator of cell morphogenesis and NO signaling compare
Pf6N2E2_2480 +0.8 1.6 FIG00957636: hypothetical protein compare
Pf6N2E2_3480 +0.8 1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_1676 +0.8 1.7 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_1456 +0.8 2.9 D-xylose transport ATP-binding protein XylG compare
Pf6N2E2_2584 +0.8 3.8 Flagellar biosynthesis protein FliL compare
Pf6N2E2_3690 +0.8 4.4 Na(+)/H(+) antiporter compare
Pf6N2E2_311 +0.8 1.9 hypothetical protein compare
Pf6N2E2_84 +0.8 0.9 hypothetical protein compare
Pf6N2E2_1162 +0.8 0.8 Transmembrane amino acid efflux protein compare
Pf6N2E2_5748 +0.8 2.3 Transcriptional activator protein LuxR compare
Pf6N2E2_1692 +0.8 1.4 transporter, LysE family compare
Pf6N2E2_1671 +0.8 2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5425 +0.8 0.9 hypothetical protein compare
Pf6N2E2_2089 +0.7 1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_2577 +0.7 4.7 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_1677 +0.7 2.2 Chalcone synthase (EC 2.3.1.74) compare
Pf6N2E2_969 +0.7 3.4 Putative uncharacterized protein STY4534 (Putative uncharacterized protein) compare
Pf6N2E2_3625 +0.7 5.2 Flagellar motor rotation protein MotA compare
Pf6N2E2_5695 +0.7 3.9 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_48 +0.7 1.4 FIG00955661: hypothetical protein compare
Pf6N2E2_1844 +0.7 2.3 MaoC-related acyl dehydratase compare
Pf6N2E2_1749 +0.7 1.5 Cyn operon transcriptional activator compare
Pf6N2E2_2606 +0.7 5.3 hypothetical protein compare
Pf6N2E2_2579 +0.7 3.5 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_4083 +0.7 1.3 hypothetical protein compare
Pf6N2E2_288 +0.7 0.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5740 +0.7 2.0 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1037 +0.7 2.1 hypothetical protein compare
Pf6N2E2_16 +0.7 0.4 hypothetical protein compare
Pf6N2E2_3624 +0.7 3.2 Flagellar motor rotation protein MotB compare
Pf6N2E2_114 +0.7 2.7 Polysaccharide biosynthesis protein compare
Pf6N2E2_1889 +0.7 2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_956 +0.7 2.1 FIG01210404: hypothetical protein compare
Pf6N2E2_1514 +0.7 1.8 lipoprotein OprI, putative compare
Pf6N2E2_5848 +0.7 3.4 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_3672 +0.7 4.2 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_4335 +0.7 3.8 Uncharacterized protein ImpB compare
Pf6N2E2_1754 +0.7 2.1 FIG00731982: hypothetical protein compare
Pf6N2E2_5155 +0.7 1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3226 +0.7 2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2595 +0.7 4.3 Flagellar regulatory protein FleQ compare
Pf6N2E2_3305 +0.7 1.8 hypothetical protein compare
Pf6N2E2_1705 +0.7 1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2576 +0.7 5.0 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_4765 +0.7 3.0 FIG00954771: hypothetical protein compare
Pf6N2E2_3093 +0.7 1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3537 +0.7 1.4 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_2178 +0.7 2.2 FIG00960144: hypothetical protein compare
Pf6N2E2_3555 +0.7 2.9 Tabtoxin resistance protein compare
Pf6N2E2_1566 +0.7 1.3 FIG00960770: hypothetical protein compare
Pf6N2E2_2597 +0.7 4.4 Flagellar regulatory protein FleQ compare
Pf6N2E2_1678 +0.7 4.2 Major facilitator family transporter compare
Pf6N2E2_4895 +0.7 2.3 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_1859 +0.7 2.5 hypothetical protein compare
Pf6N2E2_4680 +0.7 2.4 HTH-type transcriptional regulator BetI compare
Pf6N2E2_2563 +0.7 4.8 FIG00953562: hypothetical protein compare
Pf6N2E2_5554 +0.7 2.7 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4143 +0.7 2.2 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf6N2E2_2822 +0.7 4.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5413 +0.7 2.6 Glutaredoxin NrdH compare
Pf6N2E2_1154 +0.7 1.9 FIG00978082: hypothetical protein compare
Pf6N2E2_2627 +0.7 2.6 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2534 +0.7 1.8 Cell division protein BolA compare
Pf6N2E2_2420 +0.7 1.1 hypothetical protein compare
Pf6N2E2_1567 +0.7 1.7 FIG00964846: hypothetical protein compare
Pf6N2E2_4733 +0.6 1.0 hypothetical protein compare
Pf6N2E2_4430 +0.6 4.7 Autolysis response regulater LytR compare
Pf6N2E2_3343 +0.6 3.0 AmpE protein compare
Pf6N2E2_613 +0.6 1.0 lipoprotein, putative compare
Pf6N2E2_2121 +0.6 1.5 hypothetical protein compare
Pf6N2E2_2880 +0.6 1.8 FIG00959696: hypothetical protein compare
Pf6N2E2_2628 +0.6 1.7 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_5345 +0.6 2.7 LppC putative lipoprotein compare
Pf6N2E2_5241 +0.6 2.0 Aminopeptidase N compare
Pf6N2E2_3981 +0.6 5.2 T1SS secreted agglutinin RTX compare
Pf6N2E2_331 +0.6 1.0 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_5872 +0.6 3.2 Sensor histidine kinase/response regulator compare
Pf6N2E2_2195 +0.6 1.9 cI compare
Pf6N2E2_822 +0.6 2.8 TPR domain protein compare
Pf6N2E2_2580 +0.6 1.4 Flagellar biosynthesis protein FliP compare
Pf6N2E2_4994 +0.6 2.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_3024 +0.6 1.3 Phage tail fibers compare
Pf6N2E2_1974 +0.6 1.9 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_5556 +0.6 2.5 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
Pf6N2E2_2626 +0.6 3.7 Flagellar L-ring protein FlgH compare
Pf6N2E2_6070 +0.6 0.8 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_1095 +0.6 1.4 Opine oxidase subunit C compare
Pf6N2E2_3923 +0.6 1.0 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_2044 +0.6 4.9 Histidine kinase/response regulator hybrid protein compare
Pf6N2E2_2589 +0.6 2.5 Flagellar protein FliJ compare
Pf6N2E2_805 +0.6 2.5 Xylulose kinase (EC 2.7.1.17) (from data) compare
Pf6N2E2_5830 +0.6 2.3 FIG00960829: hypothetical protein compare
Pf6N2E2_1139 +0.6 2.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf6N2E2_4347 +0.6 3.5 FIG00957151: hypothetical protein compare
Pf6N2E2_3762 +0.6 2.6 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2602 +0.6 4.0 Flagellin protein FlaA compare
Pf6N2E2_1009 +0.6 1.9 Inositol transport system permease protein compare
Pf6N2E2_5861 +0.6 3.1 FIG00953885: hypothetical protein compare
Pf6N2E2_3634 +0.6 1.1 Transporter compare
Pf6N2E2_1128 +0.6 0.7 Two-component response regulator compare
Pf6N2E2_3954 +0.6 3.5 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf6N2E2_4145 +0.6 1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_1626 +0.6 2.4 Putative ATP-binding component of a transport system compare
Pf6N2E2_5088 +0.6 1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_869 +0.6 1.9 FMN oxidoreductase compare
Pf6N2E2_718 +0.6 1.2 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_3157 +0.6 2.5 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_2578 +0.6 1.9 Flagellar biosynthesis protein FliR compare
Pf6N2E2_663 +0.6 1.3 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_4136 +0.6 2.9 Aromatic ring-cleaving dioxygenase compare
Pf6N2E2_211 +0.6 3.1 SanC compare
Pf6N2E2_5174 +0.6 1.4 Glycosyltransferase compare
Pf6N2E2_1826 +0.6 2.3 possible FusE-MFP/HlyD family membrane fusion protein compare
Pf6N2E2_4103 +0.6 2.7 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
Pf6N2E2_2585 +0.6 2.8 Flagellar hook-length control protein FliK compare
Pf6N2E2_4960 +0.6 2.2 Transcriptional regulator, LysR family compare
Pf6N2E2_5697 +0.6 4.2 Flagellar hook protein FlgE compare
Pf6N2E2_3004 +0.6 0.7 Prophage baseplate assembly protein V compare
Pf6N2E2_1412 +0.6 1.6 hypothetical protein compare
Pf6N2E2_847 +0.5 1.2 Phosphoribosyl transferase domain protein compare
Pf6N2E2_3221 +0.5 0.9 FIG00352444: hypothetical protein compare
Pf6N2E2_33 +0.5 1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1654 +0.5 1.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_502 +0.5 1.1 hypothetical protein compare
Pf6N2E2_4672 +0.5 2.9 FIG00953568: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms