Experiment set22IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 5mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -8.3 -9.9 hypothetical protein compare
Pf6N2E2_64 -7.2 -4.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3783 -6.9 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5309 -6.2 -8.3 Permease of the drug/metabolite transporter (DMT) superfamily conserved
Pf6N2E2_3264 -5.9 -11.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5069 -5.7 -8.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3839 -5.5 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4187 -5.5 -9.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5316 -5.4 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5177 -5.2 -13.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3842 -5.2 -6.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3826 -5.2 -7.1 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2864 -5.2 -2.2 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2320 -5.1 -11.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3751 -5.0 -13.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5242 -4.9 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5494 -4.8 -3.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5291 -4.8 -24.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3072 -4.8 -14.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_71 -4.7 -7.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2318 -4.7 -24.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3782 -4.7 -8.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4826 -4.6 -8.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_66 -4.6 -12.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5338 -4.6 -29.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3932 -4.5 -5.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5339 -4.5 -22.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4279 -4.5 -16.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3696 -4.5 -1.4 hypothetical protein compare
Pf6N2E2_5337 -4.5 -20.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3786 -4.4 -10.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_5666 -4.4 -10.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4048 -4.4 -6.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2465 -4.3 -7.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2073 -4.3 -10.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_77 -4.3 -5.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2258 -4.3 -9.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3752 -4.3 -20.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4564 -4.3 -11.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3825 -4.3 -4.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2863 -4.1 -9.1 Gluconate permease compare
Pf6N2E2_2317 -4.0 -11.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3252 -4.0 -8.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2509 -3.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3940 -3.9 -10.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4278 -3.9 -13.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5068 -3.9 -11.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_302 -3.8 -7.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2885 -3.8 -8.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4825 -3.8 -9.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2825 -3.8 -6.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5175 -3.8 -7.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5190 -3.7 -8.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5150 -3.7 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5160 -3.7 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3630 -3.7 -8.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4803 -3.7 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2552 -3.6 -12.4 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3984 -3.6 -15.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3778 -3.6 -2.8 FIG00954300: hypothetical protein compare
Pf6N2E2_3521 -3.5 -11.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_3303 -3.5 -6.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3253 -3.5 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -3.5 -9.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2312 -3.5 -3.1 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2282 -3.4 -4.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2824 -3.4 -10.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3610 -3.4 -3.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4277 -3.4 -12.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_63 -3.3 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2189 -3.3 -6.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5258 -3.3 -10.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2574 -3.2 -3.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_2823 -3.2 -6.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3841 -3.2 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4047 -3.2 -5.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5176 -3.1 -5.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4305 -3.1 -1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_4597 -3.1 -7.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3248 -3.0 -3.2 Probable transmembrane protein compare
Pf6N2E2_5006 -3.0 -5.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2447 -3.0 -6.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4052 -3.0 -1.3 FIG00955481: hypothetical protein compare
Pf6N2E2_3659 -3.0 -7.6 Protein fixF compare
Pf6N2E2_2962 -2.9 -1.5 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4153 -2.9 -2.5 Sensory box histidine kinase compare
Pf6N2E2_5520 -2.9 -8.2 Sensory box histidine kinase compare
Pf6N2E2_4476 -2.9 -6.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_5308 -2.9 -10.2 Transcriptional regulator, AraC family conserved
Pf6N2E2_4276 -2.9 -6.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2506 -2.9 -14.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2059 -2.8 -2.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3373 -2.8 -2.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2755 -2.8 -4.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3664 -2.7 -9.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3037 -2.7 -13.2 RNA polymerase sigma factor RpoS compare
Pf6N2E2_1656 -2.7 -1.4 hypothetical protein compare
Pf6N2E2_3074 -2.7 -1.9 FIG00960973: hypothetical protein compare
Pf6N2E2_3835 -2.7 -3.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4638 -2.7 -4.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5560 -2.7 -1.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_5605 -2.6 -2.4 FxsA protein compare
Pf6N2E2_3658 -2.6 -13.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1636 -2.6 -8.0 Ferrichrome-iron receptor compare
Pf6N2E2_5703 -2.6 -5.9 outer membrane protein H1 compare
Pf6N2E2_1162 -2.6 -1.5 Transmembrane amino acid efflux protein compare
Pf6N2E2_4762 -2.5 -2.2 Biotin synthesis protein BioH compare
Pf6N2E2_4394 -2.5 -3.4 Putrescine utilization regulator compare
Pf6N2E2_5257 -2.5 -8.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1534 -2.5 -1.1 Probable transmembrane protein compare
Pf6N2E2_2897 -2.5 -8.7 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_4499 -2.5 -2.0 protein of unknown function DUF86 compare
Pf6N2E2_2225 -2.5 -1.2 FIG00953489: hypothetical protein compare
Pf6N2E2_5704 -2.5 -6.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5780 -2.5 -6.1 Periplasmic protease compare
Pf6N2E2_4987 -2.4 -1.3 MaoC-like domain protein compare
Pf6N2E2_3151 -2.4 -3.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5394 -2.4 -3.5 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3785 -2.4 -3.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_2218 -2.4 -3.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2316 -2.4 -8.6 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_2384 -2.4 -3.6 CmpX compare
Pf6N2E2_5728 -2.4 -3.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3587 -2.3 -5.3 Azurin compare
Pf6N2E2_2420 -2.3 -2.1 hypothetical protein compare
Pf6N2E2_5317 -2.3 -10.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_2277 -2.3 -1.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2074 -2.3 -0.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2753 -2.3 -5.0 HtrA protease/chaperone protein compare
Pf6N2E2_5527 -2.3 -1.8 Cold shock protein CspC compare
Pf6N2E2_5705 -2.3 -4.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4369 -2.3 -1.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5319 -2.2 -5.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3908 -2.2 -1.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3170 -2.2 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3300 -2.2 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_96 -2.2 -3.4 FIG011065: hypothetical protein compare
Pf6N2E2_5030 -2.2 -7.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_1989 -2.2 -2.2 hypothetical protein compare
Pf6N2E2_2899 -2.2 -4.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_855 -2.2 -1.3 Transcriptional regulator, IclR family compare
Pf6N2E2_922 -2.2 -2.4 FIG00794167: hypothetical protein compare
Pf6N2E2_5178 -2.2 -5.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5219 -2.1 -6.4 FIG140336: TPR domain protein compare
Pf6N2E2_2442 -2.1 -9.9 sensor histidine kinase/response regulator compare
Pf6N2E2_2292 -2.1 -4.1 Universal stress protein family COG0589 compare
Pf6N2E2_2510 -2.0 -5.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2588 -2.0 -3.3 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_817 -2.0 -8.7 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_1617 -2.0 -0.8 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4351 -2.0 -11.3 Predicted signal transduction protein compare
Pf6N2E2_1776 -2.0 -1.7 Chemotaxis protein CheD compare
Pf6N2E2_5103 -2.0 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_295 -2.0 -2.0 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_4813 -1.9 -12.0 Probable two-component sensor, near polyamine transporter compare
Pf6N2E2_3849 -1.9 -0.9 FIG00954739: hypothetical protein compare
Pf6N2E2_4584 -1.9 -4.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_6063 -1.9 -7.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2201 -1.9 -6.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_5523 -1.9 -1.8 Small-conductance mechanosensitive channel compare
Pf6N2E2_3198 -1.9 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_50 -1.9 -7.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3847 -1.9 -3.1 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3834 -1.9 -6.2 Lipoprotein NlpD compare
Pf6N2E2_178 -1.9 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_552 -1.9 -1.2 Uncharacterized protein ImpF compare
Pf6N2E2_4188 -1.9 -2.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_4889 -1.9 -6.7 Putative transport protein compare
Pf6N2E2_4743 -1.8 -0.5 hypothetical protein compare
Pf6N2E2_6082 -1.8 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5534 -1.8 -4.9 FIG000859: hypothetical protein YebC compare
Pf6N2E2_945 -1.8 -3.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2706 -1.8 -3.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4817 -1.8 -11.4 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_5727 -1.8 -5.1 FIG00955360: hypothetical protein compare
Pf6N2E2_4818 -1.8 -6.5 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_5170 -1.8 -11.0 FIG00955330: hypothetical protein compare
Pf6N2E2_1283 -1.8 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5667 -1.8 -6.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1258 -1.7 -1.6 FIG00960119: hypothetical protein compare
Pf6N2E2_3642 -1.7 -4.0 lipoprotein, putative compare
Pf6N2E2_1215 -1.7 -2.2 probable membrane protein YPO2362 compare
Pf6N2E2_4014 -1.7 -6.6 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_5320 -1.7 -7.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4612 -1.7 -2.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_813 -1.7 -1.1 Response regulator compare
Pf6N2E2_5579 -1.7 -5.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_291 -1.7 -4.7 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2938 -1.7 -5.0 Outer membrane lipoprotein compare
Pf6N2E2_3251 -1.7 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_156 -1.7 -2.4 Carbon storage regulator compare
Pf6N2E2_3617 -1.7 -5.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3938 -1.7 -9.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2707 -1.7 -2.6 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2586 -1.7 -1.3 Hpt domain protein compare
Pf6N2E2_5300 -1.7 -8.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3941 -1.6 -1.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_241 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_5524 -1.6 -8.1 Outer membrane porin, OprD family compare
Pf6N2E2_919 -1.6 -2.0 FIG00954373: hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms