Experiment set22IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 5mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_180 +2.4 10.7 Transcriptional regulator, MerR family compare
Pf6N2E2_4478 +1.9 6.8 FIG019278: hypothetical protein compare
Pf6N2E2_3762 +1.9 7.4 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2175 +1.8 5.7 Transcriptional regulator, RpiR family compare
Pf6N2E2_1626 +1.8 10.4 Putative ATP-binding component of a transport system compare
Pf6N2E2_2605 +1.6 12.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2503 +1.5 1.8 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2591 +1.5 4.4 Flagellar assembly protein FliH compare
Pf6N2E2_762 +1.5 9.2 FIG00960186: hypothetical protein compare
Pf6N2E2_3539 +1.5 1.9 FIG00955840: hypothetical protein compare
Pf6N2E2_5555 +1.4 1.9 Cold shock protein CspA compare
Pf6N2E2_5554 +1.3 5.4 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_5262 +1.3 3.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5862 +1.2 1.7 Lipoprotein, putative compare
Pf6N2E2_2013 +1.2 0.8 hypothetical protein compare
Pf6N2E2_4067 +1.2 7.7 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_2594 +1.2 7.4 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2606 +1.2 6.5 hypothetical protein compare
Pf6N2E2_4057 +1.1 1.5 lipoprotein, putative compare
Pf6N2E2_4148 +1.1 10.1 Glutamate-aspartate carrier protein compare
Pf6N2E2_2593 +1.1 4.9 Flagellar M-ring protein FliF compare
Pf6N2E2_3514 +1.1 2.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_2573 +1.1 6.0 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_4075 +1.1 6.8 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5694 +1.1 5.0 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_1747 +1.1 2.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2487 +1.1 1.5 FIG00956090: hypothetical protein compare
Pf6N2E2_2592 +1.1 4.5 Flagellar motor switch protein FliG compare
Pf6N2E2_5714 +1.1 1.7 Flavoprotein WrbA compare
Pf6N2E2_2772 +1.1 5.7 Uracil-DNA glycosylase, family 1 compare
Pf6N2E2_98 +1.0 2.6 putative transmembrane protein compare
Pf6N2E2_608 +1.0 3.7 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_3761 +1.0 8.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5816 +1.0 1.2 Smr domain protein compare
Pf6N2E2_3004 +1.0 1.4 Prophage baseplate assembly protein V compare
Pf6N2E2_338 +1.0 1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_2406 +1.0 5.7 Periplasmic binding protein compare
Pf6N2E2_5872 +1.0 5.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_4074 +1.0 9.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_395 +1.0 2.1 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2590 +1.0 7.0 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_4541 +1.0 1.5 hypothetical protein compare
Pf6N2E2_1293 +1.0 2.4 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_5695 +1.0 5.6 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_1211 +1.0 1.3 Lactoylglutathione lyase compare
Pf6N2E2_1676 +1.0 2.0 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3717 +1.0 3.4 Lysophospholipid acyltransferase compare
Pf6N2E2_1735 +1.0 2.2 PhnB protein compare
Pf6N2E2_1774 +0.9 1.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2563 +0.9 7.8 FIG00953562: hypothetical protein compare
Pf6N2E2_3672 +0.9 5.0 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_4630 +0.9 3.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_5345 +0.9 4.5 LppC putative lipoprotein compare
Pf6N2E2_3871 +0.9 6.6 FIG00553872: hypothetical protein compare
Pf6N2E2_1577 +0.9 2.8 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_1834 +0.9 1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2576 +0.9 6.8 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_1972 +0.9 1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_819 +0.9 1.8 Response regulator compare
Pf6N2E2_942 +0.9 1.0 Mll6465 protein compare
Pf6N2E2_234 +0.9 2.2 FIG00454312: hypothetical protein compare
Pf6N2E2_5556 +0.9 3.9 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
Pf6N2E2_2579 +0.9 4.5 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2578 +0.9 4.0 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3271 +0.9 1.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1917 +0.9 2.0 hypothetical protein compare
Pf6N2E2_2247 +0.9 2.8 Transcriptional regulator, AraC family compare
Pf6N2E2_5155 +0.9 2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4984 +0.9 2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5025 +0.9 7.5 Sensor histidine kinase compare
Pf6N2E2_3875 +0.9 1.3 FIG00953324: hypothetical protein compare
Pf6N2E2_5730 +0.9 2.3 FIG00954480: hypothetical protein compare
Pf6N2E2_2577 +0.9 5.9 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_491 +0.9 3.5 hypothetical protein compare
Pf6N2E2_728 +0.9 1.7 Nitrate/nitrite transporter compare
Pf6N2E2_5869 +0.9 1.6 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_3219 +0.9 1.6 hypothetical protein compare
Pf6N2E2_204 +0.8 1.1 hypothetical protein compare
Pf6N2E2_1675 +0.8 5.3 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_4050 +0.8 3.0 FIG00953718: hypothetical protein compare
Pf6N2E2_3268 +0.8 3.9 Ribosome hibernation protein YhbH compare
Pf6N2E2_2999 +0.8 2.8 probable tail fiber assembly protein compare
Pf6N2E2_2440 +0.8 1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1153 +0.8 2.1 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_342 +0.8 1.6 DNA-binding response regulator compare
Pf6N2E2_1677 +0.8 4.4 Chalcone synthase (EC 2.3.1.74) compare
Pf6N2E2_349 +0.8 1.7 hypothetical protein compare
Pf6N2E2_5571 +0.8 0.8 hypothetical protein compare
Pf6N2E2_5845 +0.8 5.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2589 +0.8 3.5 Flagellar protein FliJ compare
Pf6N2E2_2467 +0.8 1.1 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_5723 +0.8 4.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_3122 +0.8 1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_1671 +0.8 2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2501 +0.8 0.8 hypothetical protein compare
Pf6N2E2_2152 +0.8 1.5 hypothetical protein compare
Pf6N2E2_3806 +0.8 2.2 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_1238 +0.8 1.9 hypothetical protein compare
Pf6N2E2_122 +0.8 1.2 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_4766 +0.8 6.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf6N2E2_5865 +0.8 4.4 Chaperone protein HtpG compare
Pf6N2E2_5496 +0.8 1.8 FIG00953991: hypothetical protein compare
Pf6N2E2_1412 +0.8 1.5 hypothetical protein compare
Pf6N2E2_5846 +0.8 6.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2580 +0.8 1.9 Flagellar biosynthesis protein FliP compare
Pf6N2E2_4332 +0.8 1.8 hypothetical protein compare
Pf6N2E2_3710 +0.8 4.2 3-oxoacyl-[ACP] synthase compare
Pf6N2E2_4765 +0.8 2.2 FIG00954771: hypothetical protein compare
Pf6N2E2_4678 +0.7 1.0 hypothetical protein compare
Pf6N2E2_1303 +0.7 1.7 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_2178 +0.7 2.8 FIG00960144: hypothetical protein compare
Pf6N2E2_97 +0.7 2.7 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3868 +0.7 2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_4084 +0.7 6.2 Transcriptional regulator compare
Pf6N2E2_4680 +0.7 1.7 HTH-type transcriptional regulator BetI compare
Pf6N2E2_869 +0.7 2.8 FMN oxidoreductase compare
Pf6N2E2_5508 +0.7 1.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4444 +0.7 3.2 FIG00953537: hypothetical protein compare
Pf6N2E2_1169 +0.7 1.3 TnpR protein compare
Pf6N2E2_3079 +0.7 4.3 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_319 +0.7 2.2 DUF1850 domain-containing protein compare
Pf6N2E2_6062 +0.7 3.9 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_2114 +0.7 2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2363 +0.7 2.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_2984 +0.7 1.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2499 +0.7 1.3 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_3109 +0.7 4.1 Outer membrane lipoprotein omp16 precursor compare
Pf6N2E2_5130 +0.7 2.2 hypothetical protein compare
Pf6N2E2_3026 +0.7 3.0 Baseplate assembly protein W compare
Pf6N2E2_2583 +0.7 4.0 Flagellar motor switch protein FliM compare
Pf6N2E2_2527 +0.7 5.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2584 +0.7 3.5 Flagellar biosynthesis protein FliL compare
Pf6N2E2_1980 +0.7 3.8 hypothetical protein compare
Pf6N2E2_1504 +0.7 1.4 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_1718 +0.7 0.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_4509 +0.7 4.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
Pf6N2E2_78 +0.7 1.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5873 +0.7 2.7 FIG00953467: hypothetical protein compare
Pf6N2E2_3716 +0.7 2.4 FIG143263: Glycosyl transferase compare
Pf6N2E2_4994 +0.7 3.7 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_953 +0.7 1.4 FIG00958851: hypothetical protein compare
Pf6N2E2_5697 +0.7 5.7 Flagellar hook protein FlgE compare
Pf6N2E2_4715 +0.7 3.0 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_2626 +0.7 3.8 Flagellar L-ring protein FlgH compare
Pf6N2E2_2402 +0.7 0.8 hypothetical protein compare
Pf6N2E2_4963 +0.7 1.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_3570 +0.7 3.4 Urease accessory protein UreE compare
Pf6N2E2_3171 +0.7 0.6 hypothetical protein compare
Pf6N2E2_1146 +0.6 3.2 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf6N2E2_5250 +0.6 2.2 Restriction endonuclease compare
Pf6N2E2_425 +0.6 1.5 FIG00957304: hypothetical protein compare
Pf6N2E2_529 +0.6 2.5 FIG00954439: hypothetical protein compare
Pf6N2E2_3624 +0.6 3.4 Flagellar motor rotation protein MotB compare
Pf6N2E2_663 +0.6 1.8 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_341 +0.6 2.4 sensor histidine kinase compare
Pf6N2E2_2597 +0.6 4.1 Flagellar regulatory protein FleQ compare
Pf6N2E2_1323 +0.6 1.9 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5874 +0.6 5.2 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf6N2E2_5485 +0.6 2.5 Large exoproteins involved in heme utilization or adhesion compare
Pf6N2E2_1711 +0.6 1.7 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) compare
Pf6N2E2_610 +0.6 3.4 Nitrate/nitrite transporter compare
Pf6N2E2_1754 +0.6 1.5 FIG00731982: hypothetical protein compare
Pf6N2E2_6130 +0.6 1.9 5S RNA compare
Pf6N2E2_493 +0.6 1.7 YD repeat protein compare
Pf6N2E2_611 +0.6 2.6 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) compare
Pf6N2E2_2300 +0.6 1.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_3560 +0.6 2.7 membrane protein, putative compare
Pf6N2E2_2857 +0.6 1.6 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1885 +0.6 1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1902 +0.6 1.7 Oxidoreductase, aldo/keto reductase family compare
Pf6N2E2_5594 +0.6 2.6 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_469 +0.6 1.0 lipoprotein, putative compare
Pf6N2E2_414 +0.6 1.6 Chemotaxis protein CheD compare
Pf6N2E2_3712 +0.6 2.6 Acyl carrier protein (ACP1) compare
Pf6N2E2_1981 +0.6 1.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_1081 +0.6 0.6 probable membrane protein YPO3302 compare
Pf6N2E2_5860 +0.6 3.2 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_4430 +0.6 3.7 Autolysis response regulater LytR compare
Pf6N2E2_624 +0.6 1.6 hypothetical protein PA3071 compare
Pf6N2E2_4204 +0.6 1.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5225 +0.6 4.1 Lipid A 3-O-deacylase compare
Pf6N2E2_1660 +0.6 0.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_4962 +0.6 2.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3975 +0.6 2.0 Taurine transport ATP-binding protein TauB compare
Pf6N2E2_504 +0.6 1.6 DNA-binding response regulator compare
Pf6N2E2_3018 +0.6 2.2 FIG00955390: hypothetical protein compare
Pf6N2E2_1750 +0.6 2.5 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_3093 +0.6 1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3788 +0.6 2.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_4895 +0.6 1.5 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_4437 +0.6 2.1 Twin-arginine translocation protein TatB compare
Pf6N2E2_4779 +0.6 2.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_5863 +0.6 2.5 FIG00956080: hypothetical protein compare
Pf6N2E2_6087 +0.6 1.1 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2925 +0.6 1.4 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) compare
Pf6N2E2_3480 +0.6 0.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_2628 +0.6 1.7 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_3956 +0.6 1.6 FIG00960943: hypothetical protein compare
Pf6N2E2_4990 +0.6 0.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_5226 +0.5 0.4 FIG00955589: hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms