Experiment set22IT029 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrate 5mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -7.1 -4.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2312 -5.9 -2.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_6164 -5.8 -1.7 tRNA-Val-TAC compare
Pf6N2E2_5177 -5.4 -12.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3630 -5.2 -7.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3661 -5.0 -6.6 hypothetical protein compare
Pf6N2E2_4187 -5.0 -11.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2574 -5.0 -2.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3932 -4.9 -6.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5242 -4.9 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3826 -4.7 -6.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5069 -4.7 -8.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5494 -4.7 -3.2 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_66 -4.7 -12.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3665 -4.6 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3839 -4.6 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5316 -4.6 -4.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3696 -4.4 -1.3 hypothetical protein compare
Pf6N2E2_3782 -4.4 -6.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_77 -4.4 -5.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4278 -4.4 -13.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3264 -4.3 -7.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2864 -4.3 -2.6 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_71 -4.3 -7.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2753 -4.3 -5.0 HtrA protease/chaperone protein compare
Pf6N2E2_3752 -4.3 -22.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5223 -4.2 -4.7 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_2823 -4.2 -5.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4279 -4.1 -13.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4277 -4.1 -13.3 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4762 -4.1 -2.4 Biotin synthesis protein BioH compare
Pf6N2E2_2899 -4.1 -6.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4153 -4.1 -3.6 Sensory box histidine kinase compare
Pf6N2E2_4564 -4.1 -10.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3751 -4.1 -14.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4638 -4.1 -2.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2320 -4.0 -13.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4826 -3.9 -6.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2318 -3.9 -22.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5527 -3.8 -2.4 Cold shock protein CspC compare
Pf6N2E2_5291 -3.8 -19.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_5571 -3.8 -1.8 hypothetical protein compare
Pf6N2E2_4597 -3.7 -8.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3072 -3.6 -11.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5176 -3.5 -2.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3786 -3.5 -9.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_1617 -3.5 -1.0 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4624 -3.5 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2317 -3.5 -9.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4047 -3.4 -3.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5068 -3.4 -11.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3373 -3.4 -6.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3841 -3.4 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5175 -3.4 -9.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3783 -3.4 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4048 -3.4 -7.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4596 -3.4 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2885 -3.4 -6.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5337 -3.4 -16.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2258 -3.4 -10.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3303 -3.4 -6.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5338 -3.3 -24.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3984 -3.3 -10.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4825 -3.3 -8.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3825 -3.3 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2282 -3.3 -3.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3940 -3.2 -8.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5339 -3.2 -20.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_302 -3.2 -7.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3027 -3.1 -0.9 Baseplate assembly protein V compare
Pf6N2E2_2073 -3.0 -9.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2825 -3.0 -5.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_434 -2.9 -2.0 hypothetical protein compare
Pf6N2E2_4276 -2.9 -6.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_698 -2.8 -1.0 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_2962 -2.8 -1.4 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_3252 -2.8 -5.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2824 -2.8 -9.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3617 -2.8 -9.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3170 -2.8 -6.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4414 -2.8 -1.7 FIG00953808: hypothetical protein compare
Pf6N2E2_1636 -2.7 -8.7 Ferrichrome-iron receptor compare
Pf6N2E2_63 -2.7 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5006 -2.7 -6.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5150 -2.7 -5.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2552 -2.7 -11.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2465 -2.7 -6.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3037 -2.7 -11.3 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2422 -2.6 -7.3 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_1656 -2.6 -1.2 hypothetical protein compare
Pf6N2E2_5534 -2.6 -5.1 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3253 -2.5 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3300 -2.5 -3.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3151 -2.5 -7.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2124 -2.5 -1.9 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3248 -2.5 -4.0 Probable transmembrane protein compare
Pf6N2E2_5523 -2.5 -1.7 Small-conductance mechanosensitive channel compare
Pf6N2E2_3611 -2.5 -1.2 HflC protein compare
Pf6N2E2_3171 -2.5 -1.0 hypothetical protein compare
Pf6N2E2_4928 -2.4 -1.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_1162 -2.4 -1.4 Transmembrane amino acid efflux protein compare
Pf6N2E2_3610 -2.4 -3.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1534 -2.4 -1.0 Probable transmembrane protein compare
Pf6N2E2_2286 -2.4 -3.1 FIG00953287: hypothetical protein compare
Pf6N2E2_2863 -2.4 -7.0 Gluconate permease compare
Pf6N2E2_1792 -2.4 -1.5 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_6063 -2.4 -9.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2013 -2.4 -0.7 hypothetical protein compare
Pf6N2E2_2225 -2.4 -1.1 FIG00953489: hypothetical protein compare
Pf6N2E2_5962 -2.3 -6.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4773 -2.3 -0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2640 -2.3 -0.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2688 -2.3 -1.6 YD repeat protein compare
Pf6N2E2_1034 -2.3 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2074 -2.3 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2189 -2.3 -5.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3320 -2.3 -4.4 hypothetical protein compare
Pf6N2E2_2201 -2.2 -5.5 Transmembrane regulator protein PrtR compare
Pf6N2E2_5520 -2.2 -8.0 Sensory box histidine kinase compare
Pf6N2E2_3842 -2.2 -3.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4584 -2.2 -4.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2277 -2.1 -1.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3785 -2.1 -4.0 Twin-arginine translocation protein TatB compare
Pf6N2E2_96 -2.1 -3.6 FIG011065: hypothetical protein compare
Pf6N2E2_2447 -2.1 -4.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2069 -2.1 -3.0 FIG00953703: hypothetical protein compare
Pf6N2E2_817 -2.1 -7.5 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_942 -2.1 -1.5 Mll6465 protein compare
Pf6N2E2_1989 -2.1 -1.7 hypothetical protein compare
Pf6N2E2_2646 -2.1 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_2510 -2.0 -2.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3612 -2.0 -1.9 HflK protein compare
Pf6N2E2_5780 -2.0 -6.6 Periplasmic protease compare
Pf6N2E2_2549 -2.0 -1.1 hypothetical protein compare
Pf6N2E2_3587 -2.0 -3.2 Azurin compare
Pf6N2E2_4422 -2.0 -1.8 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_3834 -2.0 -5.5 Lipoprotein NlpD compare
Pf6N2E2_5103 -2.0 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3835 -2.0 -4.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2292 -2.0 -3.9 Universal stress protein family COG0589 compare
Pf6N2E2_2967 -2.0 -1.1 Cold shock protein CspA compare
Pf6N2E2_5394 -1.9 -1.1 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2386 -1.9 -3.5 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_4562 -1.9 -1.5 L-cystine uptake protein TcyP compare
Pf6N2E2_4305 -1.9 -0.9 FIG00959590: hypothetical protein compare
Pf6N2E2_5993 -1.9 -1.4 FIG00957412: hypothetical protein compare
Pf6N2E2_3658 -1.9 -9.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1040 -1.9 -2.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_477 -1.9 -4.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_2378 -1.9 -7.2 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Pf6N2E2_5666 -1.9 -6.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5178 -1.9 -3.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5671 -1.8 -4.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1968 -1.8 -2.5 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_4889 -1.8 -7.4 Putative transport protein compare
Pf6N2E2_4743 -1.8 -0.5 hypothetical protein compare
Pf6N2E2_2376 -1.8 -6.1 nitrate transporter (from data) conserved
Pf6N2E2_3132 -1.8 -2.7 FIG00954548: hypothetical protein compare
Pf6N2E2_5746 -1.8 -1.1 Cobalamin synthase compare
Pf6N2E2_50 -1.8 -5.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3664 -1.8 -8.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_156 -1.8 -2.6 Carbon storage regulator compare
Pf6N2E2_4394 -1.7 -4.0 Putrescine utilization regulator compare
Pf6N2E2_5704 -1.7 -4.5 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2038 -1.7 -3.3 Transcriptional regulator, TetR family compare
Pf6N2E2_338 -1.7 -0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_2423 -1.7 -3.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2384 -1.7 -3.3 CmpX compare
Pf6N2E2_2397 -1.7 -2.0 Two-component system response regulator QseB compare
Pf6N2E2_658 -1.7 -6.7 sensor histidine kinase compare
Pf6N2E2_3477 -1.6 -1.1 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2380 -1.6 -7.1 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf6N2E2_4763 -1.6 -5.2 Biotin synthesis protein BioC compare
Pf6N2E2_5170 -1.6 -8.7 FIG00955330: hypothetical protein compare
Pf6N2E2_5727 -1.6 -3.7 FIG00955360: hypothetical protein compare
Pf6N2E2_89 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_2440 -1.6 -0.9 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3778 -1.6 -2.4 FIG00954300: hypothetical protein compare
Pf6N2E2_2264 -1.6 -2.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4999 -1.6 -6.5 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2375 -1.6 -3.5 Response regulator NasT compare
Pf6N2E2_3969 -1.6 -0.6 Membrane-fusion protein compare
Pf6N2E2_813 -1.6 -1.1 Response regulator compare
Pf6N2E2_1081 -1.6 -0.9 probable membrane protein YPO3302 compare
Pf6N2E2_3941 -1.5 -1.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5081 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_4160 -1.5 -1.4 Cytochrome c5 compare
Pf6N2E2_4797 -1.5 -0.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4025 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_5219 -1.5 -7.2 FIG140336: TPR domain protein compare
Pf6N2E2_3534 -1.5 -0.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5392 -1.5 -2.3 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_5428 -1.5 -5.4 DNA recombination and repair protein RecO compare
Pf6N2E2_1876 -1.5 -1.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_5825 -1.5 -2.1 FIG00958237: hypothetical protein compare
Pf6N2E2_3198 -1.5 -1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_75 -1.5 -4.4 Colicin V production protein compare
Pf6N2E2_5560 -1.5 -1.7 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_367 -1.5 -3.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5522 -1.5 -3.0 FIG001943: hypothetical protein YajQ compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrate across organisms