Experiment set22IT028 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -7.5 -12.5 hypothetical protein compare
Pf6N2E2_3783 -6.8 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -6.5 -4.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3778 -5.7 -3.3 FIG00954300: hypothetical protein compare
Pf6N2E2_3252 -5.4 -7.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3839 -5.3 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2320 -5.3 -9.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3826 -5.2 -6.2 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3825 -5.1 -3.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4187 -5.1 -10.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2574 -5.0 -2.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_5242 -4.9 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4826 -4.9 -8.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5177 -4.8 -12.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_77 -4.8 -4.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3782 -4.8 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4597 -4.7 -9.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3303 -4.6 -7.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4803 -4.6 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3751 -4.5 -15.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3696 -4.4 -1.3 hypothetical protein compare
Pf6N2E2_3752 -4.4 -21.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3264 -4.4 -11.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5291 -4.4 -24.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_4279 -4.3 -16.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_64 -4.3 -3.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_241 -4.3 -1.3 hypothetical protein compare
Pf6N2E2_4825 -4.3 -10.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3842 -4.3 -5.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4564 -4.3 -10.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4048 -4.2 -7.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2318 -4.2 -23.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4278 -4.2 -12.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2073 -4.1 -8.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_66 -4.1 -11.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2825 -4.1 -6.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4638 -4.1 -2.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3932 -4.1 -5.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5339 -4.0 -19.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3248 -3.9 -5.2 Probable transmembrane protein compare
Pf6N2E2_5337 -3.9 -22.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5527 -3.9 -2.4 Cold shock protein CspC compare
Pf6N2E2_3940 -3.8 -9.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3539 -3.8 -1.9 FIG00955840: hypothetical protein compare
Pf6N2E2_3786 -3.8 -12.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_2258 -3.8 -10.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5338 -3.8 -27.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2282 -3.7 -3.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4596 -3.7 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4918 -3.7 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3610 -3.6 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5069 -3.6 -6.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5150 -3.6 -6.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5175 -3.6 -7.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4277 -3.6 -11.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2753 -3.5 -5.4 HtrA protease/chaperone protein compare
Pf6N2E2_3253 -3.5 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4206 -3.5 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3984 -3.5 -12.2 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2552 -3.4 -12.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5068 -3.4 -11.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5176 -3.4 -3.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3072 -3.4 -12.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_2317 -3.4 -6.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2823 -3.4 -4.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4047 -3.3 -4.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3630 -3.2 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2824 -3.2 -10.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5178 -3.1 -6.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3027 -3.1 -0.9 Baseplate assembly protein V compare
Pf6N2E2_4305 -3.1 -1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_302 -3.0 -6.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3096 -2.9 -0.8 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2189 -2.9 -6.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2962 -2.9 -1.5 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4353 -2.9 -3.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2899 -2.8 -5.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5316 -2.8 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2422 -2.8 -10.0 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_2465 -2.7 -5.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2423 -2.6 -5.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_1656 -2.6 -1.2 hypothetical protein compare
Pf6N2E2_4691 -2.6 -2.1 hypothetical protein compare
Pf6N2E2_3763 -2.5 -1.2 hypothetical protein compare
Pf6N2E2_3037 -2.5 -12.8 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3589 -2.5 -1.0 Lysine decarboxylase family compare
Pf6N2E2_5223 -2.5 -4.2 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_4153 -2.5 -2.4 Sensory box histidine kinase compare
Pf6N2E2_3170 -2.5 -6.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5520 -2.5 -7.4 Sensory box histidine kinase compare
Pf6N2E2_2013 -2.4 -0.7 hypothetical protein compare
Pf6N2E2_4276 -2.4 -6.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1534 -2.4 -1.0 Probable transmembrane protein compare
Pf6N2E2_2225 -2.4 -1.2 FIG00953489: hypothetical protein compare
Pf6N2E2_1776 -2.4 -1.7 Chemotaxis protein CheD compare
Pf6N2E2_3841 -2.4 -5.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2640 -2.4 -0.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2885 -2.4 -6.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_659 -2.4 -1.6 Transcriptional regulatory protein ompR compare
Pf6N2E2_1792 -2.3 -1.5 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_2074 -2.3 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3785 -2.3 -4.6 Twin-arginine translocation protein TatB compare
Pf6N2E2_1034 -2.3 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3658 -2.3 -11.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2281 -2.2 -2.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_1636 -2.2 -6.8 Ferrichrome-iron receptor compare
Pf6N2E2_2518 -2.2 -2.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_5780 -2.2 -6.4 Periplasmic protease compare
Pf6N2E2_3664 -2.2 -11.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3251 -2.2 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3373 -2.2 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_63 -2.2 -3.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_50 -2.2 -7.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5006 -2.2 -7.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4369 -2.2 -1.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2440 -2.2 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2549 -2.2 -1.2 hypothetical protein compare
Pf6N2E2_3550 -2.2 -2.5 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_2588 -2.2 -2.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5160 -2.1 -2.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2378 -2.1 -8.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Pf6N2E2_2646 -2.1 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_3151 -2.1 -5.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2835 -2.1 -1.8 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_2896 -2.1 -5.6 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4764 -2.1 -4.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_1989 -2.1 -1.7 hypothetical protein compare
Pf6N2E2_817 -2.0 -7.3 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_5666 -2.0 -6.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5103 -2.0 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2499 -2.0 -2.1 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_1920 -2.0 -1.7 Rubredoxin compare
Pf6N2E2_4889 -2.0 -8.8 Putative transport protein compare
Pf6N2E2_96 -2.0 -3.7 FIG011065: hypothetical protein compare
Pf6N2E2_5671 -2.0 -3.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2938 -1.9 -5.7 Outer membrane lipoprotein compare
Pf6N2E2_2316 -1.9 -6.9 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_658 -1.9 -8.3 sensor histidine kinase compare
Pf6N2E2_6063 -1.9 -8.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3198 -1.9 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3475 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_2376 -1.9 -8.0 nitrate transporter (from data) conserved
Pf6N2E2_1551 -1.9 -2.0 Transcriptional regulator compare
Pf6N2E2_2863 -1.9 -5.9 Gluconate permease compare
Pf6N2E2_895 -1.9 -2.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_2755 -1.9 -2.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4624 -1.9 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5394 -1.9 -3.1 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_178 -1.9 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2506 -1.8 -10.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_1870 -1.8 -1.4 hypothetical protein compare
Pf6N2E2_4743 -1.8 -0.5 hypothetical protein compare
Pf6N2E2_5579 -1.8 -5.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_5571 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_4584 -1.8 -4.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2675 -1.8 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4763 -1.8 -5.0 Biotin synthesis protein BioC compare
Pf6N2E2_1072 -1.8 -5.6 LmbE-like protein compare
Pf6N2E2_5962 -1.8 -5.5 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2218 -1.7 -3.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3325 -1.7 -1.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_2509 -1.7 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2510 -1.7 -4.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2129 -1.7 -1.9 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2292 -1.7 -3.3 Universal stress protein family COG0589 compare
Pf6N2E2_3204 -1.7 -2.0 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_5494 -1.7 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5170 -1.7 -8.8 FIG00955330: hypothetical protein compare
Pf6N2E2_2380 -1.7 -7.7 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf6N2E2_1441 -1.7 -1.1 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3612 -1.6 -2.1 HflK protein compare
Pf6N2E2_2323 -1.6 -1.0 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_1715 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_3969 -1.6 -0.6 Membrane-fusion protein compare
Pf6N2E2_2513 -1.6 -3.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3561 -1.6 -2.2 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_1784 -1.6 -2.3 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2384 -1.6 -3.6 CmpX compare
Pf6N2E2_75 -1.6 -3.3 Colicin V production protein compare
Pf6N2E2_4025 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_5605 -1.6 -1.5 FxsA protein compare
Pf6N2E2_469 -1.6 -1.8 lipoprotein, putative compare
Pf6N2E2_3477 -1.6 -1.0 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_4999 -1.6 -5.8 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_813 -1.6 -1.1 Response regulator compare
Pf6N2E2_2386 -1.6 -3.1 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_631 -1.6 -4.3 2-ketogluconate utilization repressor PtxS compare
Pf6N2E2_2059 -1.6 -1.5 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_2321 -1.6 -5.5 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_2707 -1.6 -2.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2311 -1.5 -7.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4272 -1.5 -3.9 putative membrane protein compare
Pf6N2E2_5133 -1.5 -1.1 FIG00953980: hypothetical protein compare
Pf6N2E2_4797 -1.5 -0.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_922 -1.5 -2.2 FIG00794167: hypothetical protein compare
Pf6N2E2_5944 -1.5 -4.3 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_3834 -1.5 -4.9 Lipoprotein NlpD compare
Pf6N2E2_1037 -1.5 -3.0 hypothetical protein compare
Pf6N2E2_4416 -1.5 -1.6 Tyrosine recombinase XerC compare
Pf6N2E2_4505 -1.5 -2.5 Alkanesulfonates transport system permease protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrate across organisms