Experiment set22IT026 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -8.6 -8.4 hypothetical protein compare
Pf6N2E2_4187 -5.9 -8.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5291 -5.8 -26.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3839 -5.5 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5316 -5.4 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4597 -5.4 -8.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3264 -5.3 -14.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2574 -5.1 -2.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_5242 -5.0 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_71 -4.9 -7.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3825 -4.8 -4.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_1281 -4.7 -3.1 ATPase involved in DNA repair compare
Pf6N2E2_4803 -4.7 -2.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2320 -4.6 -10.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1288 -4.5 -2.3 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2318 -4.4 -25.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2825 -4.4 -6.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3630 -4.3 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3984 -4.1 -14.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3782 -4.1 -5.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_64 -4.1 -3.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3610 -4.1 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5069 -4.1 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5339 -4.0 -23.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2282 -4.0 -2.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5150 -4.0 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3786 -3.9 -8.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_5571 -3.9 -2.0 hypothetical protein compare
Pf6N2E2_5068 -3.9 -11.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_659 -3.8 -1.9 Transcriptional regulatory protein ompR compare
Pf6N2E2_1989 -3.8 -2.3 hypothetical protein compare
Pf6N2E2_5177 -3.6 -9.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4825 -3.6 -8.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4826 -3.6 -6.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5338 -3.6 -24.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3842 -3.5 -6.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3303 -3.5 -7.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3248 -3.5 -5.2 Probable transmembrane protein compare
Pf6N2E2_5337 -3.5 -21.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2823 -3.5 -5.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_127 -3.4 -1.4 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3252 -3.4 -8.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3841 -3.4 -6.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3752 -3.3 -18.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2081 -3.3 -2.3 putative exported protein compare
Pf6N2E2_3751 -3.2 -12.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3253 -3.2 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4279 -3.2 -12.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2552 -3.1 -10.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4596 -3.1 -8.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4048 -3.1 -7.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2753 -3.1 -5.4 HtrA protease/chaperone protein compare
Pf6N2E2_4047 -3.1 -6.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2317 -3.1 -4.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4564 -3.0 -8.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3096 -3.0 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3037 -2.9 -13.1 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2824 -2.9 -10.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1434 -2.9 -3.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3783 -2.9 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3658 -2.9 -10.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4584 -2.9 -5.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4394 -2.9 -2.8 Putrescine utilization regulator compare
Pf6N2E2_5175 -2.9 -10.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3932 -2.8 -6.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2488 -2.8 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2189 -2.8 -7.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2506 -2.8 -13.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4277 -2.8 -10.3 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3826 -2.7 -5.1 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5560 -2.7 -1.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_3763 -2.6 -1.3 hypothetical protein compare
Pf6N2E2_66 -2.6 -8.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2258 -2.6 -7.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3785 -2.6 -4.0 Twin-arginine translocation protein TatB compare
Pf6N2E2_3100 -2.6 -3.0 FIG00953063: hypothetical protein compare
Pf6N2E2_2201 -2.6 -6.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_4153 -2.5 -4.6 Sensory box histidine kinase compare
Pf6N2E2_4762 -2.5 -2.1 Biotin synthesis protein BioH compare
Pf6N2E2_204 -2.5 -1.2 hypothetical protein compare
Pf6N2E2_5006 -2.5 -4.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5190 -2.5 -8.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3072 -2.5 -11.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_2073 -2.5 -9.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3659 -2.5 -8.9 Protein fixF compare
Pf6N2E2_971 -2.5 -1.2 hypothetical protein compare
Pf6N2E2_5520 -2.4 -6.9 Sensory box histidine kinase compare
Pf6N2E2_16 -2.4 -0.7 hypothetical protein compare
Pf6N2E2_4278 -2.4 -9.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_1656 -2.4 -1.2 hypothetical protein compare
Pf6N2E2_384 -2.4 -2.0 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5780 -2.4 -6.3 Periplasmic protease compare
Pf6N2E2_3373 -2.4 -2.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4353 -2.3 -3.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2013 -2.3 -0.7 hypothetical protein compare
Pf6N2E2_3664 -2.3 -9.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_868 -2.3 -2.3 Transcriptional regulator, HxlR family compare
Pf6N2E2_3344 -2.3 -4.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_5527 -2.3 -1.8 Cold shock protein CspC compare
Pf6N2E2_2225 -2.3 -1.1 FIG00953489: hypothetical protein compare
Pf6N2E2_4369 -2.3 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2510 -2.3 -4.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1740 -2.2 -3.5 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_1534 -2.2 -0.9 Probable transmembrane protein compare
Pf6N2E2_4414 -2.2 -2.4 FIG00953808: hypothetical protein compare
Pf6N2E2_5505 -2.2 -1.1 hypothetical protein compare
Pf6N2E2_2074 -2.2 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5703 -2.2 -5.1 outer membrane protein H1 compare
Pf6N2E2_5902 -2.2 -2.0 hypothetical protein compare
Pf6N2E2_3847 -2.2 -2.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2384 -2.2 -3.2 CmpX compare
Pf6N2E2_5534 -2.1 -5.6 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3611 -2.1 -2.2 HflC protein compare
Pf6N2E2_2509 -2.1 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_6093 -2.1 -2.0 hypothetical protein compare
Pf6N2E2_2277 -2.1 -1.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2080 -2.1 -1.8 hypothetical protein compare
Pf6N2E2_2459 -2.1 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_3300 -2.1 -3.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5103 -2.1 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3737 -2.1 -1.9 General secretion pathway protein M compare
Pf6N2E2_2586 -2.0 -1.1 Hpt domain protein compare
Pf6N2E2_4305 -2.0 -1.0 FIG00959590: hypothetical protein compare
Pf6N2E2_3834 -2.0 -5.1 Lipoprotein NlpD compare
Pf6N2E2_2885 -2.0 -6.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3198 -2.0 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4372 -2.0 -3.9 FIG00460773: hypothetical protein compare
Pf6N2E2_2312 -1.9 -1.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2316 -1.9 -6.6 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_4743 -1.9 -0.5 hypothetical protein compare
Pf6N2E2_3170 -1.9 -7.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1636 -1.9 -7.1 Ferrichrome-iron receptor compare
Pf6N2E2_4889 -1.9 -9.6 Putative transport protein compare
Pf6N2E2_855 -1.9 -1.1 Transcriptional regulator, IclR family compare
Pf6N2E2_5160 -1.9 -2.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_827 -1.9 -1.0 probable dioxygenase compare
Pf6N2E2_5579 -1.9 -6.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2350 -1.9 -3.1 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_3151 -1.9 -6.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2447 -1.9 -5.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4638 -1.8 -3.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2706 -1.8 -3.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_63 -1.8 -3.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3021 -1.8 -0.7 hypothetical protein compare
Pf6N2E2_302 -1.8 -4.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5524 -1.8 -8.6 Outer membrane porin, OprD family compare
Pf6N2E2_295 -1.8 -1.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_178 -1.8 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_367 -1.8 -3.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1718 -1.8 -0.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_5219 -1.8 -6.8 FIG140336: TPR domain protein compare
Pf6N2E2_3969 -1.8 -0.7 Membrane-fusion protein compare
Pf6N2E2_3940 -1.7 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4205 -1.7 -4.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4763 -1.7 -6.0 Biotin synthesis protein BioC compare
Pf6N2E2_3941 -1.7 -1.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4025 -1.7 -0.7 hypothetical protein compare
Pf6N2E2_3778 -1.7 -2.4 FIG00954300: hypothetical protein compare
Pf6N2E2_1433 -1.7 -2.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3024 -1.7 -2.4 Phage tail fibers compare
Pf6N2E2_5727 -1.7 -4.9 FIG00955360: hypothetical protein compare
Pf6N2E2_5704 -1.7 -3.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_4272 -1.7 -4.1 putative membrane protein compare
Pf6N2E2_3219 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_945 -1.6 -3.5 Transcriptional regulator, TetR family compare
Pf6N2E2_4999 -1.6 -6.6 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_377 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_2292 -1.6 -3.1 Universal stress protein family COG0589 compare
Pf6N2E2_4548 -1.6 -2.4 hypothetical protein compare
Pf6N2E2_4993 -1.6 -2.3 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5720 -1.6 -6.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2088 -1.6 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_425 -1.6 -2.2 FIG00957304: hypothetical protein compare
Pf6N2E2_3617 -1.6 -7.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2323 -1.6 -1.0 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3534 -1.6 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_939 -1.5 -2.2 hypothetical protein compare
Pf6N2E2_5178 -1.5 -3.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2827 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_2755 -1.5 -2.7 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5499 -1.5 -0.8 hypothetical protein compare
Pf6N2E2_3505 -1.5 -0.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2111 -1.5 -2.5 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_77 -1.5 -2.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5170 -1.5 -8.8 FIG00955330: hypothetical protein compare
Pf6N2E2_4276 -1.5 -3.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5261 -1.5 -1.2 FIG00956983: hypothetical protein compare
Pf6N2E2_2465 -1.5 -5.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3535 -1.5 -4.7 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_2513 -1.5 -3.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4362 -1.5 -1.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2588 -1.5 -2.4 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_817 -1.5 -6.7 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_3587 -1.5 -2.7 Azurin compare
Pf6N2E2_3251 -1.4 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_658 -1.4 -6.5 sensor histidine kinase compare
Pf6N2E2_4160 -1.4 -1.4 Cytochrome c5 compare
Pf6N2E2_4731 -1.4 -2.8 FIG00955037: hypothetical protein compare
Pf6N2E2_2010 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_5494 -1.4 -3.2 Pyruvate kinase (EC 2.7.1.40) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in nitrogen source experiments

For nitrogen source Sodium nitrite across organisms