Experiment set22IT025 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -7.2 -12.0 hypothetical protein compare
Pf6N2E2_3264 -6.5 -6.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4597 -6.2 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4187 -5.9 -8.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3611 -5.8 -2.7 HflC protein compare
Pf6N2E2_4153 -5.5 -4.8 Sensory box histidine kinase compare
Pf6N2E2_2574 -5.3 -2.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_5242 -5.2 -3.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5177 -5.1 -15.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5291 -5.1 -24.5 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3630 -5.0 -7.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4803 -4.8 -2.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4048 -4.8 -5.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2320 -4.7 -10.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2318 -4.7 -26.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3826 -4.7 -8.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3786 -4.6 -10.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_5190 -4.6 -6.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4278 -4.5 -13.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5068 -4.5 -14.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3751 -4.5 -15.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5316 -4.4 -4.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4826 -4.4 -10.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5069 -4.4 -7.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4279 -4.2 -13.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3752 -4.2 -21.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5086 -4.2 -1.2 hypothetical protein compare
Pf6N2E2_77 -4.2 -4.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5339 -4.1 -21.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5338 -4.0 -27.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -4.0 -17.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4638 -4.0 -3.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2825 -3.9 -7.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2823 -3.9 -5.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3932 -3.9 -5.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4596 -3.9 -9.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3984 -3.9 -13.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3782 -3.8 -6.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3842 -3.7 -5.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3303 -3.7 -5.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4564 -3.7 -7.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3825 -3.6 -4.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5150 -3.6 -5.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2552 -3.5 -11.4 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5175 -3.5 -9.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3839 -3.5 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2312 -3.5 -3.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2317 -3.5 -9.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4047 -3.5 -5.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4825 -3.5 -9.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_1776 -3.5 -1.6 Chemotaxis protein CheD compare
Pf6N2E2_2258 -3.4 -12.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5006 -3.4 -4.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3841 -3.4 -6.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2864 -3.4 -2.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2824 -3.4 -11.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3248 -3.4 -3.2 Probable transmembrane protein compare
Pf6N2E2_2755 -3.4 -4.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4277 -3.3 -9.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2073 -3.3 -9.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_66 -3.2 -7.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3252 -3.2 -6.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4305 -3.2 -1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_3940 -3.2 -7.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3610 -3.2 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1834 -3.1 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3096 -3.1 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_71 -3.1 -5.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3253 -3.0 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3783 -3.0 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2863 -2.9 -7.8 Gluconate permease compare
Pf6N2E2_841 -2.9 -2.8 hypothetical protein compare
Pf6N2E2_3072 -2.9 -12.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5560 -2.9 -2.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_1656 -2.8 -1.4 hypothetical protein compare
Pf6N2E2_2899 -2.8 -6.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3778 -2.8 -3.2 FIG00954300: hypothetical protein compare
Pf6N2E2_3763 -2.8 -1.3 hypothetical protein compare
Pf6N2E2_5176 -2.7 -7.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3785 -2.7 -5.6 Twin-arginine translocation protein TatB compare
Pf6N2E2_3037 -2.7 -12.1 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3658 -2.7 -14.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2885 -2.7 -7.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1441 -2.7 -1.4 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3373 -2.7 -2.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5780 -2.6 -6.4 Periplasmic protease compare
Pf6N2E2_1636 -2.6 -9.5 Ferrichrome-iron receptor compare
Pf6N2E2_2225 -2.6 -1.2 FIG00953489: hypothetical protein compare
Pf6N2E2_5494 -2.6 -4.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5534 -2.6 -6.3 FIG000859: hypothetical protein YebC compare
Pf6N2E2_1534 -2.6 -1.0 Probable transmembrane protein compare
Pf6N2E2_3659 -2.5 -9.6 Protein fixF compare
Pf6N2E2_5704 -2.5 -6.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5520 -2.5 -6.4 Sensory box histidine kinase compare
Pf6N2E2_1893 -2.5 -1.7 hypothetical protein compare
Pf6N2E2_3835 -2.5 -5.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_338 -2.5 -0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_5160 -2.5 -2.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4369 -2.4 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4414 -2.4 -2.5 FIG00953808: hypothetical protein compare
Pf6N2E2_2277 -2.4 -1.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2509 -2.4 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2074 -2.4 -0.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_1034 -2.4 -0.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4762 -2.4 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_2189 -2.3 -8.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2646 -2.3 -1.1 FIG00953416: hypothetical protein compare
Pf6N2E2_64 -2.3 -2.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_6063 -2.3 -9.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2465 -2.3 -5.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4918 -2.3 -1.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3664 -2.2 -9.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2506 -2.2 -15.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_63 -2.2 -4.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2938 -2.2 -6.6 Outer membrane lipoprotein compare
Pf6N2E2_3170 -2.2 -6.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3151 -2.2 -4.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_817 -2.2 -7.8 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_3617 -2.2 -8.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5178 -2.2 -6.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2675 -2.2 -1.2 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2753 -2.2 -4.1 HtrA protease/chaperone protein compare
Pf6N2E2_4121 -2.2 -4.2 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_302 -2.1 -3.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3834 -2.1 -6.9 Lipoprotein NlpD compare
Pf6N2E2_2316 -2.1 -7.3 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_5103 -2.1 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3198 -2.1 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3300 -2.1 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3849 -2.1 -0.9 FIG00954739: hypothetical protein compare
Pf6N2E2_5703 -2.1 -4.5 outer membrane protein H1 compare
Pf6N2E2_4394 -2.1 -4.6 Putrescine utilization regulator compare
Pf6N2E2_5394 -2.0 -3.6 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2513 -2.0 -3.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5746 -2.0 -1.2 Cobalamin synthase compare
Pf6N2E2_1404 -2.0 -2.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3587 -2.0 -2.8 Azurin compare
Pf6N2E2_178 -2.0 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3344 -2.0 -4.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_5219 -2.0 -5.4 FIG140336: TPR domain protein compare
Pf6N2E2_4743 -1.9 -0.5 hypothetical protein compare
Pf6N2E2_2447 -1.9 -5.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_659 -1.9 -1.5 Transcriptional regulatory protein ompR compare
Pf6N2E2_2388 -1.9 -3.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3908 -1.9 -2.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5170 -1.9 -10.5 FIG00955330: hypothetical protein compare
Pf6N2E2_5720 -1.9 -5.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2588 -1.9 -2.7 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2835 -1.8 -2.3 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_434 -1.8 -1.6 hypothetical protein compare
Pf6N2E2_2292 -1.8 -4.2 Universal stress protein family COG0589 compare
Pf6N2E2_2281 -1.8 -3.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2017 -1.8 -2.0 DNA-binding protein compare
Pf6N2E2_3941 -1.8 -1.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_813 -1.8 -1.2 Response regulator compare
Pf6N2E2_2706 -1.8 -3.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3969 -1.7 -0.7 Membrane-fusion protein compare
Pf6N2E2_4889 -1.7 -8.9 Putative transport protein compare
Pf6N2E2_5579 -1.7 -4.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3204 -1.7 -2.1 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_4584 -1.7 -4.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3534 -1.7 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5727 -1.7 -4.1 FIG00955360: hypothetical protein compare
Pf6N2E2_4797 -1.7 -0.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3475 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4999 -1.6 -5.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4353 -1.6 -2.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2674 -1.6 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_4372 -1.6 -3.8 FIG00460773: hypothetical protein compare
Pf6N2E2_5156 -1.6 -1.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4416 -1.6 -2.6 Tyrosine recombinase XerC compare
Pf6N2E2_3328 -1.6 -1.0 transcriptional regulator compare
Pf6N2E2_2754 -1.6 -3.1 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5734 -1.6 -7.4 NLP/P60 family protein compare
Pf6N2E2_5902 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_3505 -1.5 -0.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4273 -1.5 -5.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3679 -1.5 -4.4 Protein involved in catabolism of external DNA compare
Pf6N2E2_241 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_3260 -1.5 -3.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3251 -1.5 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_75 -1.5 -4.4 Colicin V production protein compare
Pf6N2E2_4763 -1.5 -5.1 Biotin synthesis protein BioC compare
Pf6N2E2_288 -1.5 -1.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5524 -1.5 -8.3 Outer membrane porin, OprD family compare
Pf6N2E2_3820 -1.5 -2.4 hypothetical protein compare
Pf6N2E2_5523 -1.5 -2.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_4276 -1.5 -3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1258 -1.5 -2.1 FIG00960119: hypothetical protein compare
Pf6N2E2_2321 -1.4 -4.8 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_4160 -1.4 -1.5 Cytochrome c5 compare
Pf6N2E2_5575 -1.4 -1.0 Glycerol uptake facilitator protein compare
Pf6N2E2_5014 -1.4 -0.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2510 -1.4 -2.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4585 -1.4 -7.9 Cell division protein FtsX compare
Pf6N2E2_658 -1.4 -6.9 sensor histidine kinase compare
Pf6N2E2_5252 -1.4 -2.5 FIG00956396: hypothetical protein compare
Pf6N2E2_4824 -1.4 -3.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_4188 -1.4 -2.0 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_5733 -1.4 -3.5 NLP/P60 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms