Experiment set22IT025 for Pseudomonas fluorescens SBW25-INTG

Compare to:

trans-aconitic acid 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -7.5 -26.4 response regulator compare
PFLU_RS10765 -7.4 -33.0 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS19015 -7.0 -23.3 anti-sigma factor compare
PFLU_RS21530 -5.1 -39.6 transporter substrate-binding domain-containing protein compare
PFLU_RS22600 -4.8 -5.7 RNA polymerase sigma factor SigX compare
PFLU_RS20575 -4.8 -6.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02490 -4.7 -11.0 phosphoserine phosphatase SerB compare
PFLU_RS28535 -4.6 -12.2 dihydroxy-acid dehydratase compare
PFLU_RS06430 -4.5 -32.6 RNA polymerase sigma factor RpoS compare
PFLU_RS25640 -4.2 -12.6 ketol-acid reductoisomerase compare
PFLU_RS29290 -4.0 -10.0 hypothetical protein compare
PFLU_RS25645 -4.0 -2.8 acetolactate synthase small subunit compare
PFLU_RS24765 -4.0 -21.6 2-isopropylmalate synthase compare
PFLU_RS20565 -4.0 -14.3 3-isopropylmalate dehydrogenase compare
PFLU_RS29515 -3.8 -13.0 RidA family protein compare
PFLU_RS28655 -3.7 -11.3 HAD family hydrolase compare
PFLU_RS00175 -3.7 -4.4 tryptophan synthase subunit alpha compare
PFLU_RS27365 -3.7 -11.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -3.7 -10.0 phosphoribosylanthranilate isomerase compare
PFLU_RS27370 -3.6 -14.5 anthranilate phosphoribosyltransferase compare
PFLU_RS28165 -3.6 -13.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS28695 -3.6 -9.5 phosphoglycerate dehydrogenase compare
PFLU_RS28390 -3.6 -12.8 methionine biosynthesis protein MetW compare
PFLU_RS12975 -3.6 -4.3 DUF934 domain-containing protein compare
PFLU_RS12980 -3.6 -7.6 nitrite/sulfite reductase compare
PFLU_RS20580 -3.5 -12.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01610 -3.5 -11.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS08655 -3.5 -7.0 heme ABC transporter permease compare
PFLU_RS23065 -3.5 -10.0 phosphate acyltransferase PlsX compare
PFLU_RS02275 -3.5 -4.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS00180 -3.4 -7.3 tryptophan synthase subunit beta compare
PFLU_RS01605 -3.4 -9.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28385 -3.4 -15.5 homoserine O-acetyltransferase compare
PFLU_RS06055 -3.4 -3.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS23235 -3.3 -5.1 Arc family DNA-binding protein compare
PFLU_RS18505 -3.3 -6.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01620 -3.2 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20510 -3.1 -14.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20290 -3.0 -3.9 integration host factor subunit alpha compare
PFLU_RS22070 -3.0 -4.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02590 -3.0 -10.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS23310 -2.9 -8.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS08670 -2.9 -9.7 heme lyase CcmF/NrfE family subunit compare
PFLU_RS24025 -2.9 -13.2 quinolinate synthase NadA compare
PFLU_RS03770 -2.8 -14.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS01625 -2.8 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS20515 -2.8 -5.9 amidophosphoribosyltransferase compare
PFLU_RS04465 -2.8 -10.4 ATP phosphoribosyltransferase compare
PFLU_RS22740 -2.8 -4.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS23305 -2.7 -10.8 arginine N-succinyltransferase compare
PFLU_RS21775 -2.7 -18.7 flagellar basal body M-ring protein FliF compare
PFLU_RS04470 -2.7 -12.5 histidinol dehydrogenase compare
PFLU_RS01895 -2.7 -7.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03765 -2.7 -12.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS25360 -2.7 -8.3 glutamate 5-kinase compare
PFLU_RS23070 -2.7 -1.8 50S ribosomal protein L32 compare
PFLU_RS21780 -2.6 -10.3 flagellar hook-basal body complex protein FliE compare
PFLU_RS03970 -2.6 -11.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS22520 -2.6 -5.7 GntR family transcriptional regulator compare
PFLU_RS01900 -2.6 -8.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS05690 -2.5 -3.3 Grx4 family monothiol glutaredoxin compare
PFLU_RS04140 -2.5 -3.7 response regulator transcription factor compare
PFLU_RS08665 -2.4 -6.8 cytochrome c maturation protein CcmE compare
PFLU_RS27650 -2.4 -15.3 biotin synthase BioB compare
PFLU_RS21770 -2.4 -13.3 flagellar motor switch protein FliG compare
PFLU_RS08660 -2.4 -5.3 heme exporter protein CcmD compare
PFLU_RS09055 -2.4 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS21705 -2.3 -14.6 flagellar biosynthesis protein FliQ compare
PFLU_RS21700 -2.3 -12.9 flagellar type III secretion system protein FliR compare
PFLU_RS28965 -2.3 -10.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS21725 -2.3 -12.9 flagellar motor switch protein FliM compare
PFLU_RS14945 -2.3 -13.1 LysR family transcriptional regulator conserved
PFLU_RS00415 -2.2 -1.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS21765 -2.1 -12.3 flagellar assembly protein FliH compare
PFLU_RS21760 -2.1 -16.3 flagellar protein export ATPase FliI compare
PFLU_RS08125 -2.1 -3.3 integration host factor subunit beta compare
PFLU_RS14715 -2.1 -12.4 protein-glutamate O-methyltransferase CheR compare
PFLU_RS14935 -2.1 -8.1 dicarboxylate/amino acid:cation symporter compare
PFLU_RS08675 -2.1 -5.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS21675 -2.1 -16.9 flagellar biosynthesis protein FlhA compare
PFLU_RS03240 -2.1 -13.2 copper-translocating P-type ATPase compare
PFLU_RS25735 -2.1 -3.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07690 -2.0 -11.3 helix-turn-helix transcriptional regulator compare
PFLU_RS21710 -2.0 -10.6 flagellar type III secretion system pore protein FliP compare
PFLU_RS21695 -2.0 -10.9 flagellar biosynthesis protein FlhB compare
PFLU_RS08410 -2.0 -8.4 HTH-type transcriptional regulator CysB compare
PFLU_RS04165 -2.0 -7.0 cell division protein ZapE compare
PFLU_RS20660 -2.0 -13.3 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS14940 -2.0 -8.7 4-oxalomesaconate tautomerase conserved
PFLU_RS21755 -2.0 -12.0 flagella biosynthesis chaperone FliJ compare
PFLU_RS13915 -2.0 -4.6 hypothetical protein compare
PFLU_RS07225 -1.9 -13.7 L-aspartate oxidase compare
PFLU_RS18530 -1.9 -3.7 DNA translocase FtsK compare
PFLU_RS31440 -1.9 -1.7 hypothetical protein compare
PFLU_RS21850 -1.9 -15.0 flagellar basal body L-ring protein FlgH compare
PFLU_RS25800 -1.9 -6.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS22105 -1.9 -4.8 cysteine synthase CysM compare
PFLU_RS21855 -1.8 -11.0 flagellar basal-body rod protein FlgG compare
PFLU_RS21835 -1.8 -14.7 flagellar hook-associated protein FlgK compare
PFLU_RS21300 -1.8 -3.9 cysteine hydrolase compare
PFLU_RS21660 -1.8 -13.4 RNA polymerase sigma factor FliA compare
PFLU_RS29480 -1.8 -14.7 exodeoxyribonuclease III compare
PFLU_RS01320 -1.8 -8.4 phosphoenolpyruvate carboxykinase compare
PFLU_RS02050 -1.8 -13.4 NAD(P)-binding protein compare
PFLU_RS08650 -1.8 -3.3 heme exporter protein CcmB compare
PFLU_RS23180 -1.8 -10.7 flagellar basal body rod protein FlgB compare
PFLU_RS21830 -1.8 -15.4 flagellar hook-associated protein 3 compare
PFLU_RS17895 -1.8 -7.0 glycosyltransferase family 2 protein compare
PFLU_RS27630 -1.8 -6.8 dethiobiotin synthase compare
PFLU_RS23205 -1.7 -10.8 flagellar protein FlgN compare
PFLU_RS21860 -1.7 -8.4 flagellar basal body rod protein FlgF compare
PFLU_RS21670 -1.7 -10.0 flagellar biosynthesis protein FlhF compare
PFLU_RS27380 -1.7 -10.2 anthranilate synthase component I compare
PFLU_RS02585 -1.7 -6.9 protease modulator HflC compare
PFLU_RS21735 -1.7 -11.8 flagellar hook-length control protein FliK compare
PFLU_RS23175 -1.7 -8.2 flagellar basal body rod protein FlgC compare
PFLU_RS19170 -1.7 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS27645 -1.7 -11.6 8-amino-7-oxononanoate synthase compare
PFLU_RS21795 -1.7 -15.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07255 -1.7 -4.7 sulfurtransferase TusA family protein compare
PFLU_RS21810 -1.6 -14.0 flagellar filament capping protein FliD compare
PFLU_RS21845 -1.6 -10.2 flagellar basal body P-ring protein FlgI compare
PFLU_RS21805 -1.6 -11.1 flagellar export chaperone FliS compare
PFLU_RS23165 -1.6 -13.9 flagellar hook protein FlgE compare
PFLU_RS07235 -1.6 -3.8 sigma factor AlgU negative regulatory protein compare
PFLU_RS25210 -1.6 -6.1 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS13085 -1.6 -3.4 DUF1315 family protein compare
PFLU_RS25740 -1.6 -4.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS25205 -1.6 -5.5 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS02580 -1.5 -9.0 FtsH protease activity modulator HflK compare
PFLU_RS05720 -1.5 -10.1 OmpA family protein compare
PFLU_RS25215 -1.5 -9.5 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS28665 -1.5 -11.2 threonine ammonia-lyase, biosynthetic compare
PFLU_RS21840 -1.5 -9.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS02045 -1.5 -13.1 glutamate synthase large subunit compare
PFLU_RS25750 -1.5 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23195 -1.5 -11.2 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS16310 -1.5 -1.7 hypothetical protein compare
PFLU_RS21730 -1.5 -7.4 flagellar basal body-associated protein FliL compare
PFLU_RS23130 -1.5 -8.0 response regulator transcription factor compare
PFLU_RS26640 -1.4 -5.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS22095 -1.4 -10.0 GTP diphosphokinase compare
PFLU_RS25755 -1.4 -1.0 pantoate--beta-alanine ligase compare
PFLU_RS02990 -1.4 -4.8 precorrin-3B C(17)-methyltransferase compare
PFLU_RS29505 -1.4 -5.7 DNA-directed RNA polymerase subunit omega compare
PFLU_RS04475 -1.4 -9.0 histidinol-phosphate transaminase compare
PFLU_RS06320 -1.4 -3.3 OmpH family outer membrane protein compare
PFLU_RS24085 -1.4 -1.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS25220 -1.4 -7.5 ubiquinol oxidase subunit II compare
PFLU_RS07275 -1.4 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS08505 -1.4 -5.3 protease HtpX compare
PFLU_RS29105 -1.4 -9.8 DedA family protein compare
PFLU_RS28195 -1.4 -9.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS12175 -1.4 -1.9 methyl-accepting chemotaxis protein compare
PFLU_RS18735 -1.3 -2.1 hypothetical protein compare
PFLU_RS02975 -1.3 -6.4 precorrin-3B synthase compare
PFLU_RS21635 -1.3 -6.3 flagellar motor protein compare
PFLU_RS22310 -1.3 -10.7 methyl-accepting chemotaxis protein compare
PFLU_RS30470 -1.3 -1.4 addiction module antidote protein compare
PFLU_RS18665 -1.3 -2.4 NADH-quinone oxidoreductase subunit L compare
PFLU_RS03665 -1.3 -4.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS13920 -1.3 -3.0 recombination protein NinG compare
PFLU_RS26545 -1.3 -6.6 sel1 repeat family protein compare
PFLU_RS13045 -1.3 -4.6 AAA domain-containing protein compare
PFLU_RS05210 -1.3 -1.6 HU family DNA-binding protein compare
PFLU_RS21630 -1.3 -8.1 flagellar motor protein MotD compare
PFLU_RS27640 -1.3 -1.9 alpha/beta fold hydrolase compare
PFLU_RS24790 -1.3 -3.9 tetratricopeptide repeat protein compare
PFLU_RS28320 -1.3 -2.0 glutathione synthase compare
PFLU_RS21360 -1.2 -0.9 MarR family transcriptional regulator compare
PFLU_RS31755 -1.2 -1.4 hypothetical protein compare
PFLU_RS01615 -1.2 -2.7 DUF2164 domain-containing protein compare
PFLU_RS30160 -1.2 -2.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS02965 -1.2 -6.9 cobalt-precorrin-6A reductase compare
PFLU_RS25200 -1.2 -6.5 protoheme IX farnesyltransferase compare
PFLU_RS27635 -1.2 -6.9 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS25585 -1.2 -1.3 exodeoxyribonuclease V subunit alpha compare
PFLU_RS21820 -1.2 -8.4 flagellin compare
PFLU_RS28420 -1.2 -6.4 thiazole synthase compare
PFLU_RS26535 -1.2 -5.9 thiamine phosphate synthase compare
PFLU_RS26530 -1.2 -8.6 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS14550 -1.2 -4.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS22735 -1.2 -6.9 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS23170 -1.2 -5.1 flagellar hook assembly protein FlgD compare
PFLU_RS18885 -1.1 -2.3 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS13945 -1.1 -1.3 hypothetical protein compare
PFLU_RS27475 -1.1 -5.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS02115 -1.1 -2.2 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS13035 -1.1 -2.6 cobalamin biosynthesis protein CobW compare
PFLU_RS13540 -1.1 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25730 -1.1 -7.1 PAS domain S-box protein compare
PFLU_RS27465 -1.1 -3.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS09535 -1.1 -1.3 TIGR03750 family conjugal transfer protein compare
PFLU_RS30590 -1.1 -1.5 hypothetical protein compare
PFLU_RS24205 -1.1 -1.8 DNA binding protein compare
PFLU_RS31675 -1.1 -2.3 hypothetical protein compare
PFLU_RS26565 -1.1 -1.1 rRNA maturation RNase YbeY compare
PFLU_RS07665 -1.1 -1.6 type I DNA topoisomerase compare
PFLU_RS13000 -1.1 -7.3 methionine synthase compare
PFLU_RS20730 -1.1 -2.1 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source trans-aconitic acid in Pseudomonas fluorescens SBW25-INTG

For carbon source trans-aconitic acid across organisms