Experiment set22IT024 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrite 5mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -8.2 -9.7 hypothetical protein compare
Pf6N2E2_5309 -7.3 -5.1 Permease of the drug/metabolite transporter (DMT) superfamily conserved
Pf6N2E2_64 -7.0 -4.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3264 -6.6 -4.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3783 -6.6 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4187 -6.5 -8.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4153 -6.0 -2.8 Sensory box histidine kinase compare
Pf6N2E2_3839 -5.6 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3932 -5.6 -7.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3778 -5.5 -3.2 FIG00954300: hypothetical protein compare
Pf6N2E2_2823 -5.3 -3.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_77 -5.3 -3.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5316 -5.2 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2864 -5.1 -2.1 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3303 -5.1 -7.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5291 -5.0 -23.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2574 -4.9 -2.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3253 -4.9 -3.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2258 -4.8 -5.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5069 -4.8 -8.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_71 -4.8 -7.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2320 -4.8 -9.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5242 -4.7 -3.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3826 -4.7 -6.1 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4048 -4.7 -3.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5177 -4.6 -12.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4279 -4.6 -13.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2675 -4.5 -1.4 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3786 -4.5 -9.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_3842 -4.5 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3752 -4.5 -21.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4803 -4.5 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5337 -4.5 -21.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4826 -4.5 -7.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2318 -4.4 -21.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5339 -4.4 -20.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5338 -4.4 -26.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2863 -4.3 -7.8 Gluconate permease compare
Pf6N2E2_4564 -4.3 -12.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4825 -4.2 -9.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3521 -4.2 -12.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_2073 -4.1 -9.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3984 -4.0 -13.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5520 -4.0 -9.3 Sensory box histidine kinase compare
Pf6N2E2_66 -4.0 -10.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3072 -4.0 -13.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4597 -4.0 -7.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -3.9 -7.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5666 -3.9 -7.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2189 -3.9 -2.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4638 -3.9 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4278 -3.8 -11.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2825 -3.8 -6.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5527 -3.8 -2.4 Cold shock protein CspC compare
Pf6N2E2_1989 -3.8 -2.2 hypothetical protein compare
Pf6N2E2_5068 -3.7 -12.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5571 -3.7 -1.9 hypothetical protein compare
Pf6N2E2_3751 -3.7 -12.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5175 -3.6 -6.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3074 -3.6 -1.2 FIG00960973: hypothetical protein compare
Pf6N2E2_5160 -3.6 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4276 -3.6 -6.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5190 -3.6 -8.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2317 -3.6 -11.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3825 -3.5 -4.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5258 -3.5 -7.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3940 -3.5 -8.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_302 -3.5 -5.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5150 -3.5 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2552 -3.4 -10.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3658 -3.4 -12.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2465 -3.3 -5.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2788 -3.3 -1.9 Transcriptional regulator, AsnC family compare
Pf6N2E2_2885 -3.3 -6.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5178 -3.2 -4.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3252 -3.2 -5.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2824 -3.2 -10.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2201 -3.1 -4.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_96 -3.1 -4.4 FIG011065: hypothetical protein compare
Pf6N2E2_5006 -3.1 -3.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3248 -3.1 -4.5 Probable transmembrane protein compare
Pf6N2E2_4277 -3.0 -10.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_63 -3.0 -3.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_54 -3.0 -3.5 Transcriptional regulator, TetR family compare
Pf6N2E2_5176 -3.0 -4.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3027 -3.0 -0.9 Baseplate assembly protein V compare
Pf6N2E2_924 -3.0 -1.7 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_5308 -2.9 -10.4 Transcriptional regulator, AraC family conserved
Pf6N2E2_4351 -2.9 -11.0 Predicted signal transduction protein compare
Pf6N2E2_3841 -2.9 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2753 -2.9 -4.7 HtrA protease/chaperone protein compare
Pf6N2E2_2506 -2.9 -12.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2509 -2.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4047 -2.8 -5.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2459 -2.8 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_1014 -2.8 -1.9 Nitrate/nitrite transporter compare
Pf6N2E2_3373 -2.8 -8.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3096 -2.8 -0.8 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3785 -2.8 -4.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_4762 -2.8 -2.1 Biotin synthesis protein BioH compare
Pf6N2E2_4596 -2.8 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2962 -2.7 -1.4 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4584 -2.7 -5.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2447 -2.7 -5.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3782 -2.6 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3664 -2.6 -9.2 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4599 -2.6 -3.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5705 -2.6 -4.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1656 -2.6 -1.3 hypothetical protein compare
Pf6N2E2_4427 -2.5 -2.4 FIG00954215: hypothetical protein compare
Pf6N2E2_971 -2.5 -1.3 hypothetical protein compare
Pf6N2E2_1920 -2.5 -2.2 Rubredoxin compare
Pf6N2E2_3610 -2.5 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2706 -2.5 -4.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5704 -2.5 -6.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_204 -2.5 -1.2 hypothetical protein compare
Pf6N2E2_3659 -2.5 -6.8 Protein fixF compare
Pf6N2E2_2217 -2.4 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3204 -2.4 -2.3 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_5780 -2.4 -3.3 Periplasmic protease compare
Pf6N2E2_4476 -2.4 -5.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_16 -2.4 -0.7 hypothetical protein compare
Pf6N2E2_1534 -2.4 -1.0 Probable transmembrane protein compare
Pf6N2E2_2316 -2.4 -8.1 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_1162 -2.4 -1.3 Transmembrane amino acid efflux protein compare
Pf6N2E2_2442 -2.4 -10.7 sensor histidine kinase/response regulator compare
Pf6N2E2_5317 -2.3 -9.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_2013 -2.3 -0.7 hypothetical protein compare
Pf6N2E2_5728 -2.3 -3.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5816 -2.3 -0.9 Smr domain protein compare
Pf6N2E2_2688 -2.3 -1.5 YD repeat protein compare
Pf6N2E2_895 -2.3 -1.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_2074 -2.2 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3151 -2.2 -5.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3170 -2.2 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5257 -2.2 -6.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5300 -2.2 -9.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3037 -2.2 -9.8 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2292 -2.2 -2.1 Universal stress protein family COG0589 compare
Pf6N2E2_4353 -2.2 -2.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2321 -2.2 -5.8 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_5825 -2.2 -2.9 FIG00958237: hypothetical protein compare
Pf6N2E2_1246 -2.2 -1.4 FIG00961372: hypothetical protein compare
Pf6N2E2_4342 -2.1 -2.8 Protein phosphatase ImpM compare
Pf6N2E2_4454 -2.1 -5.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1636 -2.1 -7.6 Ferrichrome-iron receptor compare
Pf6N2E2_2755 -2.1 -3.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3612 -2.1 -1.5 HflK protein compare
Pf6N2E2_2264 -2.1 -2.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_817 -2.1 -7.0 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_5030 -2.1 -5.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_3835 -2.1 -2.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2897 -2.1 -8.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_6164 -2.1 -1.5 tRNA-Val-TAC compare
Pf6N2E2_2510 -2.1 -2.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3807 -2.1 -3.7 Histidine utilization repressor compare
Pf6N2E2_2312 -2.1 -1.2 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4369 -2.0 -1.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5494 -2.0 -3.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2646 -2.0 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_5320 -2.0 -5.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_1694 -2.0 -1.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5170 -2.0 -10.0 FIG00955330: hypothetical protein compare
Pf6N2E2_521 -2.0 -2.0 hypothetical protein compare
Pf6N2E2_451 -2.0 -3.1 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_2413 -2.0 -1.4 FIG074102: hypothetical protein compare
Pf6N2E2_2120 -2.0 -9.2 Alpha-amylase (EC 3.2.1.1) compare
Pf6N2E2_2218 -1.9 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5103 -1.9 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3132 -1.9 -2.9 FIG00954548: hypothetical protein compare
Pf6N2E2_5219 -1.9 -4.7 FIG140336: TPR domain protein compare
Pf6N2E2_2513 -1.9 -4.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1718 -1.9 -0.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1893 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_4416 -1.9 -2.2 Tyrosine recombinase XerC compare
Pf6N2E2_2967 -1.9 -1.1 Cold shock protein CspA compare
Pf6N2E2_4813 -1.8 -10.8 Probable two-component sensor, near polyamine transporter compare
Pf6N2E2_3908 -1.8 -1.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4928 -1.8 -1.2 Permeases of the major facilitator superfamily compare
Pf6N2E2_4749 -1.8 -2.0 DNA polymerase III epsilon subunit (EC 2.7.7.7) compare
Pf6N2E2_178 -1.8 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4451 -1.8 -6.2 FIG139438: lipoprotein B compare
Pf6N2E2_5579 -1.8 -5.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2810 -1.8 -2.9 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_6057 -1.8 -4.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_50 -1.8 -6.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_6082 -1.8 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4817 -1.8 -10.5 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_3938 -1.8 -7.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_5318 -1.8 -10.8 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2938 -1.8 -4.9 Outer membrane lipoprotein compare
Pf6N2E2_3663 -1.8 -10.7 Glycosyl transferase compare
Pf6N2E2_1652 -1.8 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3198 -1.7 -1.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4824 -1.7 -4.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_4014 -1.7 -5.5 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_5993 -1.7 -1.3 FIG00957412: hypothetical protein compare
Pf6N2E2_5560 -1.7 -1.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_4943 -1.7 -1.4 PspA/IM30 family protein compare
Pf6N2E2_841 -1.7 -1.9 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrite across organisms