Experiment set22IT022 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -6.6 -6.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3328 -5.9 -2.9 transcriptional regulator compare
Pf6N2E2_3783 -5.7 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3661 -5.4 -8.9 hypothetical protein compare
Pf6N2E2_5223 -5.2 -4.5 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_939 -4.7 -3.3 hypothetical protein compare
Pf6N2E2_5242 -4.7 -3.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4564 -4.6 -11.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_66 -4.6 -11.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3825 -4.5 -4.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3696 -4.3 -1.3 hypothetical protein compare
Pf6N2E2_2899 -4.2 -5.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_1081 -4.2 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_4187 -4.2 -9.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4279 -4.2 -11.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4048 -4.1 -6.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3264 -4.0 -5.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5316 -4.0 -3.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4638 -3.9 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5086 -3.9 -1.1 hypothetical protein compare
Pf6N2E2_3630 -3.9 -5.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3751 -3.8 -14.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3984 -3.8 -13.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3932 -3.8 -4.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_659 -3.8 -1.9 Transcriptional regulatory protein ompR compare
Pf6N2E2_5527 -3.8 -2.3 Cold shock protein CspC compare
Pf6N2E2_4276 -3.8 -6.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3095 -3.8 -1.1 hypothetical protein compare
Pf6N2E2_3752 -3.8 -18.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1424 -3.8 -1.5 transcriptional regulator, TetR family compare
Pf6N2E2_4596 -3.7 -8.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4278 -3.7 -14.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2318 -3.6 -21.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5177 -3.6 -9.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4153 -3.6 -3.0 Sensory box histidine kinase compare
Pf6N2E2_5160 -3.6 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3842 -3.6 -3.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4825 -3.6 -8.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5291 -3.5 -21.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3072 -3.5 -13.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4277 -3.5 -11.8 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_71 -3.5 -5.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2129 -3.4 -2.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4624 -3.4 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4597 -3.4 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2320 -3.4 -9.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4206 -3.3 -1.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5069 -3.3 -7.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5175 -3.3 -6.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_1283 -3.3 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5339 -3.3 -17.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_96 -3.3 -3.8 FIG011065: hypothetical protein compare
Pf6N2E2_5150 -3.3 -5.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3786 -3.2 -9.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_2317 -3.2 -6.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5494 -3.1 -4.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5338 -3.1 -19.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -3.1 -17.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2825 -3.1 -5.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2823 -3.1 -5.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5392 -3.1 -3.7 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3839 -3.0 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3303 -3.0 -9.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2518 -3.0 -3.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_5068 -3.0 -11.4 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5520 -3.0 -7.4 Sensory box histidine kinase compare
Pf6N2E2_3253 -3.0 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4422 -2.9 -2.3 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_2258 -2.9 -9.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3037 -2.9 -12.7 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2375 -2.9 -2.3 Response regulator NasT compare
Pf6N2E2_2885 -2.9 -7.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3252 -2.9 -6.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4826 -2.9 -6.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_1834 -2.8 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3248 -2.8 -2.6 Probable transmembrane protein compare
Pf6N2E2_2422 -2.8 -8.8 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_3096 -2.8 -0.8 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_1176 -2.8 -3.7 Mll2356 protein compare
Pf6N2E2_3841 -2.7 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2292 -2.7 -3.7 Universal stress protein family COG0589 compare
Pf6N2E2_2962 -2.7 -1.3 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2552 -2.7 -9.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4414 -2.7 -1.6 FIG00953808: hypothetical protein compare
Pf6N2E2_302 -2.7 -6.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2574 -2.7 -1.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_3940 -2.6 -8.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2073 -2.6 -8.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1636 -2.6 -7.5 Ferrichrome-iron receptor compare
Pf6N2E2_3300 -2.6 -2.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2309 -2.6 -5.5 hypothetical protein compare
Pf6N2E2_2509 -2.6 -1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3373 -2.6 -4.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3835 -2.5 -3.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4415 -2.5 -1.6 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5176 -2.5 -5.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1989 -2.5 -1.9 hypothetical protein compare
Pf6N2E2_2904 -2.4 -2.6 Hypothetical protein DUF454 compare
Pf6N2E2_16 -2.4 -0.7 hypothetical protein compare
Pf6N2E2_5133 -2.4 -2.2 FIG00953980: hypothetical protein compare
Pf6N2E2_3763 -2.4 -1.1 hypothetical protein compare
Pf6N2E2_77 -2.4 -2.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_1656 -2.4 -1.1 hypothetical protein compare
Pf6N2E2_5172 -2.3 -2.0 FOG: TPR repeat compare
Pf6N2E2_2013 -2.3 -0.6 hypothetical protein compare
Pf6N2E2_1162 -2.3 -1.3 Transmembrane amino acid efflux protein compare
Pf6N2E2_1534 -2.3 -0.9 Probable transmembrane protein compare
Pf6N2E2_687 -2.3 -2.2 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_4762 -2.3 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_3610 -2.3 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_63 -2.3 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2074 -2.2 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4160 -2.2 -1.5 Cytochrome c5 compare
Pf6N2E2_1776 -2.2 -1.5 Chemotaxis protein CheD compare
Pf6N2E2_1821 -2.2 -1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4394 -2.2 -3.3 Putrescine utilization regulator compare
Pf6N2E2_2824 -2.2 -6.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1034 -2.1 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3665 -2.1 -1.1 serine/threonine protein kinase compare
Pf6N2E2_5780 -2.1 -5.1 Periplasmic protease compare
Pf6N2E2_2189 -2.1 -6.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3826 -2.1 -4.0 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2423 -2.1 -3.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4121 -2.1 -3.9 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_4353 -2.1 -3.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4047 -2.1 -4.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2510 -2.1 -2.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2143 -2.1 -2.9 Uncharacterized GST-like protein yncG compare
Pf6N2E2_3785 -2.0 -4.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_5727 -2.0 -6.6 FIG00955360: hypothetical protein compare
Pf6N2E2_2378 -2.0 -7.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Pf6N2E2_2646 -2.0 -0.9 FIG00953416: hypothetical protein compare
Pf6N2E2_2374 -2.0 -5.2 Nitrate ABC transporter, nitrate-binding protein conserved
Pf6N2E2_5020 -1.9 -4.0 FIG00955339: hypothetical protein compare
Pf6N2E2_2316 -1.9 -7.5 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_2488 -1.9 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2588 -1.9 -2.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3641 -1.9 -1.7 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_5103 -1.9 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_855 -1.9 -1.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2586 -1.9 -1.0 Hpt domain protein compare
Pf6N2E2_4584 -1.8 -2.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2967 -1.8 -1.0 Cold shock protein CspA compare
Pf6N2E2_163 -1.8 -4.1 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_4556 -1.8 -3.1 FIG00953078: hypothetical protein compare
Pf6N2E2_4392 -1.8 -1.4 Translation initiation inhibitor compare
Pf6N2E2_4369 -1.8 -1.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5705 -1.8 -5.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1136 -1.8 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3849 -1.8 -0.8 FIG00954739: hypothetical protein compare
Pf6N2E2_1040 -1.8 -1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5758 -1.8 -1.6 FIG00957314: hypothetical protein compare
Pf6N2E2_2380 -1.8 -8.5 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf6N2E2_5394 -1.8 -1.8 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_4803 -1.8 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_473 -1.8 -2.9 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_178 -1.8 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5666 -1.8 -6.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2388 -1.8 -3.1 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_4743 -1.8 -0.5 hypothetical protein compare
Pf6N2E2_4607 -1.7 -2.6 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_50 -1.7 -5.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5178 -1.7 -3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5962 -1.7 -5.3 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2384 -1.7 -3.2 CmpX compare
Pf6N2E2_3198 -1.7 -1.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3344 -1.7 -2.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_6093 -1.7 -1.9 hypothetical protein compare
Pf6N2E2_3009 -1.7 -2.7 Phage tail tube protein compare
Pf6N2E2_5993 -1.7 -1.3 FIG00957412: hypothetical protein compare
Pf6N2E2_5560 -1.7 -1.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_2376 -1.7 -6.4 nitrate transporter (from data) conserved
Pf6N2E2_1716 -1.7 -3.6 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) compare
Pf6N2E2_3170 -1.7 -5.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_817 -1.6 -4.7 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_4889 -1.6 -8.6 Putative transport protein compare
Pf6N2E2_3778 -1.6 -2.4 FIG00954300: hypothetical protein compare
Pf6N2E2_3664 -1.6 -7.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2447 -1.6 -5.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1784 -1.6 -2.3 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5579 -1.6 -4.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3969 -1.6 -0.6 Membrane-fusion protein compare
Pf6N2E2_3658 -1.6 -8.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3151 -1.6 -4.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1385 -1.6 -2.0 FIG00956261: hypothetical protein compare
Pf6N2E2_4025 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_2863 -1.6 -4.5 Gluconate permease compare
Pf6N2E2_2324 -1.6 -2.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3251 -1.6 -4.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_6063 -1.6 -5.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3908 -1.6 -2.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2465 -1.6 -4.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5704 -1.6 -4.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2688 -1.5 -1.8 YD repeat protein compare
Pf6N2E2_2367 -1.5 -0.8 hypothetical protein compare
Pf6N2E2_2440 -1.5 -0.9 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5226 -1.5 -0.6 FIG00955589: hypothetical protein compare
Pf6N2E2_4993 -1.5 -1.9 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2513 -1.5 -3.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2310 -1.5 -8.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrate across organisms