Experiment set22IT021 for Pseudomonas fluorescens FW300-N2E2

Compare to:

nitrogen source Ammonium chloride 20mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -7.5 -6.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_64 -7.0 -4.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3783 -6.7 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4187 -6.6 -10.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3661 -6.5 -12.7 hypothetical protein compare
Pf6N2E2_2320 -6.4 -10.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_71 -6.3 -4.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5291 -6.1 -25.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3839 -6.1 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4279 -6.0 -15.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2318 -5.8 -25.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3630 -5.8 -4.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4597 -5.7 -5.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -5.6 -3.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5177 -5.5 -13.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5069 -5.5 -7.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3751 -5.5 -9.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2825 -5.5 -3.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3782 -5.3 -9.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_77 -5.3 -3.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5316 -5.2 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_302 -5.1 -3.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3752 -5.1 -19.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4825 -5.0 -10.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5337 -5.0 -20.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3786 -5.0 -11.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_5339 -5.0 -20.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2574 -4.9 -3.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_4826 -4.8 -7.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5338 -4.8 -29.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2823 -4.8 -4.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3932 -4.8 -6.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_66 -4.8 -10.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5242 -4.8 -3.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4048 -4.8 -3.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3252 -4.5 -9.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3303 -4.5 -7.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4278 -4.4 -12.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4153 -4.3 -4.1 Sensory box histidine kinase compare
Pf6N2E2_4564 -4.2 -11.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2317 -4.2 -10.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3253 -4.1 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2073 -4.1 -8.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4762 -4.1 -2.8 Biotin synthesis protein BioH compare
Pf6N2E2_2885 -4.1 -6.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5068 -4.1 -12.4 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5150 -4.0 -3.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3940 -4.0 -10.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5175 -4.0 -4.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4638 -4.0 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2899 -3.9 -4.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_2552 -3.9 -11.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4277 -3.9 -12.2 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5520 -3.8 -9.8 Sensory box histidine kinase compare
Pf6N2E2_4047 -3.6 -2.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3984 -3.6 -14.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2465 -3.5 -7.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2129 -3.5 -2.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3841 -3.5 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2312 -3.5 -3.1 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2824 -3.4 -10.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3610 -3.4 -3.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4596 -3.4 -8.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5176 -3.3 -3.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2189 -3.3 -7.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1776 -3.1 -1.7 Chemotaxis protein CheD compare
Pf6N2E2_3170 -3.0 -8.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4305 -3.0 -1.4 FIG00959590: hypothetical protein compare
Pf6N2E2_2897 -2.9 -10.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5494 -2.8 -5.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2896 -2.8 -6.6 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4121 -2.8 -4.6 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_3096 -2.8 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2892 -2.8 -14.5 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_5160 -2.7 -2.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4584 -2.7 -6.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3785 -2.7 -3.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_5728 -2.7 -5.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5178 -2.6 -7.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_50 -2.6 -8.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2895 -2.6 -9.1 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_5006 -2.6 -6.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3658 -2.6 -15.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2420 -2.5 -2.2 hypothetical protein compare
Pf6N2E2_605 -2.5 -3.1 FIG002465: BNR repeat protein compare
Pf6N2E2_3248 -2.5 -4.4 Probable transmembrane protein compare
Pf6N2E2_4276 -2.5 -5.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2863 -2.5 -7.7 Gluconate permease compare
Pf6N2E2_5523 -2.5 -1.7 Small-conductance mechanosensitive channel compare
Pf6N2E2_1656 -2.5 -1.4 hypothetical protein compare
Pf6N2E2_3763 -2.5 -1.4 hypothetical protein compare
Pf6N2E2_2893 -2.4 -5.6 hypothetical protein compare
Pf6N2E2_16 -2.4 -0.8 hypothetical protein compare
Pf6N2E2_1441 -2.3 -1.5 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_2508 -2.3 -3.8 hypothetical protein compare
Pf6N2E2_96 -2.3 -3.3 FIG011065: hypothetical protein compare
Pf6N2E2_5780 -2.3 -4.7 Periplasmic protease compare
Pf6N2E2_2506 -2.3 -12.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2891 -2.3 -10.6 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_2225 -2.3 -1.3 FIG00953489: hypothetical protein compare
Pf6N2E2_1534 -2.3 -1.1 Probable transmembrane protein compare
Pf6N2E2_2013 -2.3 -0.8 hypothetical protein compare
Pf6N2E2_1636 -2.3 -7.4 Ferrichrome-iron receptor compare
Pf6N2E2_5527 -2.2 -2.6 Cold shock protein CspC compare
Pf6N2E2_2890 -2.2 -6.6 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2316 -2.2 -6.8 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_2755 -2.2 -3.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2074 -2.2 -0.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3340 -2.2 -9.7 Fructose repressor FruR, LacI family compare
Pf6N2E2_4394 -2.2 -3.3 Putrescine utilization regulator compare
Pf6N2E2_3037 -2.2 -12.2 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3617 -2.2 -6.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2258 -2.1 -9.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3373 -2.1 -3.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3251 -2.1 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_817 -2.1 -8.3 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_4759 -2.1 -9.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_855 -2.0 -1.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2864 -2.0 -1.5 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3328 -2.0 -1.5 transcriptional regulator compare
Pf6N2E2_2646 -2.0 -1.1 FIG00953416: hypothetical protein compare
Pf6N2E2_2510 -2.0 -3.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2753 -2.0 -4.9 HtrA protease/chaperone protein compare
Pf6N2E2_2311 -2.0 -9.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4803 -2.0 -2.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_6085 -2.0 -2.8 Aha1 domain superfamily compare
Pf6N2E2_3561 -1.9 -2.3 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_5605 -1.9 -2.5 FxsA protein compare
Pf6N2E2_2889 -1.9 -9.2 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_3477 -1.9 -1.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3659 -1.9 -9.0 Protein fixF compare
Pf6N2E2_2549 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_63 -1.9 -2.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2310 -1.9 -11.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4889 -1.9 -6.8 Putative transport protein compare
Pf6N2E2_5727 -1.9 -5.7 FIG00955360: hypothetical protein compare
Pf6N2E2_4369 -1.8 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2962 -1.8 -1.3 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_3198 -1.8 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4761 -1.8 -5.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4743 -1.8 -0.6 hypothetical protein compare
Pf6N2E2_4159 -1.7 -6.3 Cytochrome c4 compare
Pf6N2E2_5560 -1.7 -1.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_5671 -1.7 -4.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1968 -1.7 -2.7 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_74 -1.7 -2.8 DedD protein compare
Pf6N2E2_924 -1.7 -1.2 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1617 -1.7 -0.8 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3664 -1.7 -7.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2218 -1.7 -3.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5170 -1.6 -10.0 FIG00955330: hypothetical protein compare
Pf6N2E2_3908 -1.6 -2.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1893 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_3969 -1.6 -0.7 Membrane-fusion protein compare
Pf6N2E2_3941 -1.6 -1.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_477 -1.6 -5.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_2281 -1.6 -2.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_813 -1.6 -1.0 Response regulator compare
Pf6N2E2_4499 -1.5 -1.6 protein of unknown function DUF86 compare
Pf6N2E2_4506 -1.5 -2.5 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2507 -1.5 -3.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5172 -1.5 -2.4 FOG: TPR repeat compare
Pf6N2E2_5759 -1.5 -5.3 DNA recombination protein RmuC compare
Pf6N2E2_4797 -1.5 -0.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1705 -1.5 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5666 -1.5 -7.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1320 -1.5 -3.2 Putative response regulator compare
Pf6N2E2_2277 -1.5 -1.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2708 -1.5 -4.8 Lactam utilization protein LamB compare
Pf6N2E2_6082 -1.5 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1136 -1.5 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5219 -1.5 -5.2 FIG140336: TPR domain protein compare
Pf6N2E2_1672 -1.5 -5.9 hypothetical protein compare
Pf6N2E2_751 -1.5 -3.6 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3534 -1.5 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_552 -1.5 -1.0 Uncharacterized protein ImpF compare
Pf6N2E2_4531 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_2292 -1.4 -2.3 Universal stress protein family COG0589 compare
Pf6N2E2_6063 -1.4 -7.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_75 -1.4 -4.4 Colicin V production protein compare
Pf6N2E2_2640 -1.4 -0.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4049 -1.4 -6.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5156 -1.4 -1.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2827 -1.4 -0.7 hypothetical protein compare
Pf6N2E2_2922 -1.4 -4.0 hypothetical protein compare
Pf6N2E2_5746 -1.4 -1.3 Cobalamin synthase compare
Pf6N2E2_3834 -1.4 -5.3 Lipoprotein NlpD compare
Pf6N2E2_4416 -1.4 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_2513 -1.4 -2.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3770 -1.4 -0.9 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1989 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_3505 -1.4 -0.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2181 -1.4 -2.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4014 -1.4 -5.7 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_70 -1.3 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4205 -1.3 -3.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1034 -1.3 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2706 -1.3 -3.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4007 -1.3 -3.6 FIG00956018: hypothetical protein compare
Pf6N2E2_2309 -1.3 -2.4 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Ammonium chloride in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Ammonium chloride across organisms