Experiment set22IT008 for Pseudomonas fluorescens SBW25-INTG

Compare to:

2-Deoxy-D-Ribose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS10765 -11.1 -23.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS18410 -10.8 -11.3 response regulator compare
PFLU_RS19015 -10.4 -15.2 anti-sigma factor compare
PFLU_RS06430 -7.3 -25.1 RNA polymerase sigma factor RpoS compare
PFLU_RS21530 -5.4 -27.6 transporter substrate-binding domain-containing protein compare
PFLU_RS29290 -5.1 -7.1 hypothetical protein compare
PFLU_RS18055 -3.5 -2.4 hydrolase compare
PFLU_RS10340 -3.5 -2.4 hypothetical protein compare
PFLU_RS27690 -3.5 -2.4 response regulator compare
PFLU_RS06055 -3.5 -2.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08660 -3.5 -2.4 heme exporter protein CcmD compare
PFLU_RS18725 -3.4 -2.3 alpha/beta hydrolase compare
PFLU_RS30345 -3.3 -2.3 DUF2559 family protein compare
PFLU_RS25190 -3.2 -2.2 hypothetical protein compare
PFLU_RS20575 -3.0 -4.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS19550 -3.0 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS08675 -2.9 -2.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS22520 -2.9 -3.4 GntR family transcriptional regulator compare
PFLU_RS07690 -2.9 -9.7 helix-turn-helix transcriptional regulator compare
PFLU_RS13150 -2.8 -3.8 hypothetical protein compare
PFLU_RS28645 -2.8 -7.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07355 -2.7 -2.6 SDR family oxidoreductase compare
PFLU_RS08410 -2.7 -8.0 HTH-type transcriptional regulator CysB compare
PFLU_RS04465 -2.6 -4.4 ATP phosphoribosyltransferase compare
PFLU_RS12175 -2.6 -1.5 methyl-accepting chemotaxis protein compare
PFLU_RS13715 -2.5 -1.7 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS03240 -2.5 -8.5 copper-translocating P-type ATPase compare
PFLU_RS13370 -2.5 -1.5 DUF2790 domain-containing protein compare
PFLU_RS08665 -2.5 -3.4 cytochrome c maturation protein CcmE compare
PFLU_RS29505 -2.5 -3.8 DNA-directed RNA polymerase subunit omega compare
PFLU_RS13485 -2.5 -8.8 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS12715 -2.5 -1.4 fumarylacetoacetate hydrolase family protein compare
PFLU_RS12260 -2.5 -1.7 hypothetical protein compare
PFLU_RS31510 -2.5 -2.1 transcriptional regulator compare
PFLU_RS14440 -2.4 -1.4 hypothetical protein compare
PFLU_RS29480 -2.4 -11.8 exodeoxyribonuclease III compare
PFLU_RS11850 -2.4 -2.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS25640 -2.4 -6.7 ketol-acid reductoisomerase compare
PFLU_RS28535 -2.4 -8.2 dihydroxy-acid dehydratase compare
PFLU_RS31010 -2.4 -1.6 transposase compare
PFLU_RS08670 -2.4 -5.2 heme lyase CcmF/NrfE family subunit compare
PFLU_RS30730 -2.4 -1.6 helix-turn-helix domain-containing protein compare
PFLU_RS08655 -2.3 -3.6 heme ABC transporter permease compare
PFLU_RS08650 -2.3 -2.2 heme exporter protein CcmB compare
PFLU_RS20565 -2.3 -8.1 3-isopropylmalate dehydrogenase compare
PFLU_RS22600 -2.3 -3.8 RNA polymerase sigma factor SigX compare
PFLU_RS17750 -2.3 -2.2 pirin family protein compare
PFLU_RS31830 -2.2 -1.3 hypothetical protein compare
PFLU_RS17950 -2.2 -1.5 hypothetical protein compare
PFLU_RS04075 -2.2 -1.2 hypothetical protein compare
PFLU_RS10325 -2.2 -5.4 MFS transporter compare
PFLU_RS20290 -2.2 -2.1 integration host factor subunit alpha compare
PFLU_RS24765 -2.2 -11.6 2-isopropylmalate synthase compare
PFLU_RS03075 -2.2 -1.5 translation initiation factor Sui1 compare
PFLU_RS14995 -2.2 -1.6 response regulator transcription factor compare
PFLU_RS20970 -2.1 -1.2 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS02115 -2.1 -2.0 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS28390 -2.1 -6.0 methionine biosynthesis protein MetW compare
PFLU_RS28695 -2.1 -4.9 phosphoglycerate dehydrogenase compare
PFLU_RS20580 -2.1 -6.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS31310 -2.0 -2.0 phage tail protein compare
PFLU_RS14805 -2.0 -1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS04715 -2.0 -2.7 D-alanine--D-alanine ligase compare
PFLU_RS13035 -2.0 -1.9 cobalamin biosynthesis protein CobW compare
PFLU_RS19935 -2.0 -1.7 type II secretion system protein GspF compare
PFLU_RS13845 -2.0 -2.7 hypothetical protein compare
PFLU_RS16120 -2.0 -3.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS20955 -2.0 -1.4 DUF1028 domain-containing protein compare
PFLU_RS07910 -2.0 -1.4 type 1 fimbrial protein compare
PFLU_RS13915 -2.0 -4.9 hypothetical protein compare
PFLU_RS16710 -2.0 -2.5 nitrite reductase small subunit NirD compare
PFLU_RS02275 -1.9 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS15200 -1.9 -2.2 ABC transporter substrate-binding protein compare
PFLU_RS01605 -1.9 -4.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29095 -1.9 -12.6 polyphosphate kinase 1 compare
PFLU_RS20435 -1.9 -2.9 heavy metal response regulator transcription factor compare
PFLU_RS13945 -1.9 -1.8 hypothetical protein compare
PFLU_RS00465 -1.9 -7.2 spore maturation protein compare
PFLU_RS27370 -1.8 -6.9 anthranilate phosphoribosyltransferase compare
PFLU_RS11525 -1.8 -2.5 GntR family transcriptional regulator compare
PFLU_RS04470 -1.8 -5.9 histidinol dehydrogenase compare
PFLU_RS25645 -1.8 -1.7 acetolactate synthase small subunit compare
PFLU_RS29285 -1.8 -2.7 HAD-IA family hydrolase compare
PFLU_RS01620 -1.8 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29750 -1.8 -2.1 phosphate signaling complex protein PhoU compare
PFLU_RS14300 -1.8 -1.7 response regulator transcription factor compare
PFLU_RS29310 -1.8 -1.0 accessory factor UbiK family protein compare
PFLU_RS00180 -1.7 -3.3 tryptophan synthase subunit beta compare
PFLU_RS02590 -1.7 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS31330 -1.7 -3.1 hypothetical protein compare
PFLU_RS29815 -1.7 -3.3 aspartate ammonia-lyase compare
PFLU_RS00175 -1.7 -3.6 tryptophan synthase subunit alpha compare
PFLU_RS08445 -1.7 -3.8 MarR family transcriptional regulator compare
PFLU_RS07360 -1.7 -5.1 3-keto-5-aminohexanoate cleavage protein conserved
PFLU_RS06235 -1.7 -3.1 SufE family protein compare
PFLU_RS18250 -1.7 -2.2 DUF2160 domain-containing protein compare
PFLU_RS15990 -1.6 -1.5 SDR family oxidoreductase compare
PFLU_RS14645 -1.6 -6.3 glycerate kinase conserved
PFLU_RS07640 -1.6 -4.5 universal stress protein compare
PFLU_RS01900 -1.6 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS14725 -1.6 -4.5 hybrid sensor histidine kinase/response regulator compare
PFLU_RS05080 -1.6 -2.5 IclR family transcriptional regulator compare
PFLU_RS30215 -1.6 -4.5 KTSC domain-containing protein compare
PFLU_RS12125 -1.6 -4.1 hypothetical protein compare
PFLU_RS10430 -1.6 -2.6 peptidase compare
PFLU_RS31200 -1.6 -2.4 hypothetical protein compare
PFLU_RS20260 -1.6 -2.6 terminase compare
PFLU_RS01765 -1.6 -5.4 histidine utilization repressor compare
PFLU_RS20540 -1.6 -5.7 phosphoribosylanthranilate isomerase compare
PFLU_RS07650 -1.6 -5.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS29880 -1.6 -6.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS31425 -1.6 -1.3 hypothetical protein compare
PFLU_RS27365 -1.5 -4.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS30645 -1.5 -2.0 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS01625 -1.5 -1.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS29875 -1.5 -7.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS04385 -1.5 -3.2 RNase adapter RapZ compare
PFLU_RS10745 -1.5 -3.9 carbon-nitrogen hydrolase family protein compare
PFLU_RS20730 -1.5 -1.3 hypothetical protein compare
PFLU_RS16580 -1.5 -1.7 hypothetical protein compare
PFLU_RS26735 -1.5 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS21700 -1.5 -3.8 flagellar type III secretion system protein FliR compare
PFLU_RS07970 -1.5 -6.4 LOG family protein compare
PFLU_RS28385 -1.5 -6.7 homoserine O-acetyltransferase compare
PFLU_RS30515 -1.5 -2.8 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS04930 -1.5 -6.4 PhoH family protein compare
PFLU_RS06815 -1.5 -4.4 TetR family transcriptional regulator compare
PFLU_RS07655 -1.5 -3.3 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS20510 -1.5 -6.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS05890 -1.5 -0.8 recombination regulator RecX compare
PFLU_RS07350 -1.4 -3.8 GntR family transcriptional regulator compare
PFLU_RS30790 -1.4 -1.6 hypothetical protein compare
PFLU_RS21765 -1.4 -5.3 flagellar assembly protein FliH compare
PFLU_RS10090 -1.4 -1.6 redox-sensitive transcriptional activator SoxR compare
PFLU_RS20405 -1.4 -3.0 carbon storage regulator CsrA compare
PFLU_RS01910 -1.4 -1.0 sterol-binding protein compare
PFLU_RS16785 -1.4 -1.2 GAF domain-containing protein compare
PFLU_RS12660 -1.4 -2.6 hypothetical protein compare
PFLU_RS20185 -1.4 -2.1 hypothetical protein compare
PFLU_RS18295 -1.4 -2.9 helix-turn-helix domain-containing protein compare
PFLU_RS26570 -1.4 -2.9 HlyC/CorC family transporter compare
PFLU_RS14715 -1.4 -7.0 protein-glutamate O-methyltransferase CheR compare
PFLU_RS29360 -1.4 -1.1 cytochrome c5 family protein compare
PFLU_RS13365 -1.4 -1.3 hypothetical protein compare
PFLU_RS21770 -1.4 -5.7 flagellar motor switch protein FliG compare
PFLU_RS14720 -1.4 -3.6 chemotaxis protein CheB compare
PFLU_RS18420 -1.3 -1.3 hypothetical protein compare
PFLU_RS07960 -1.3 -2.6 hypothetical protein compare
PFLU_RS07805 -1.3 -7.1 transaldolase compare
PFLU_RS00310 -1.3 -1.1 twin transmembrane helix small protein compare
PFLU_RS13440 -1.3 -4.2 efflux transporter outer membrane subunit compare
PFLU_RS31590 -1.3 -1.2 hypothetical protein compare
PFLU_RS23620 -1.3 -4.8 MFS transporter compare
PFLU_RS12975 -1.3 -2.6 DUF934 domain-containing protein compare
PFLU_RS19900 -1.3 -1.8 general secretion pathway protein GspM compare
PFLU_RS04140 -1.3 -1.5 response regulator transcription factor compare
PFLU_RS13670 -1.3 -2.3 (2Fe-2S)-binding protein compare
PFLU_RS22310 -1.3 -7.1 methyl-accepting chemotaxis protein compare
PFLU_RS30160 -1.3 -1.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS21775 -1.3 -6.9 flagellar basal body M-ring protein FliF compare
PFLU_RS23920 -1.3 -1.2 septation protein A compare
PFLU_RS12810 -1.3 -2.8 IclR family transcriptional regulator compare
PFLU_RS16300 -1.3 -2.1 hypothetical protein compare
PFLU_RS29550 -1.3 -2.3 ATP-dependent DNA helicase RecG compare
PFLU_RS18865 -1.3 -1.7 Na+/H+ antiporter subunit G compare
PFLU_RS01500 -1.3 -1.6 cell division protein FtsQ compare
PFLU_RS13665 -1.3 -1.0 MarR family transcriptional regulator compare
PFLU_RS16440 -1.3 -2.5 acyl-CoA dehydrogenase compare
PFLU_RS09335 -1.3 -3.1 hypothetical protein compare
PFLU_RS21670 -1.2 -6.7 flagellar biosynthesis protein FlhF compare
PFLU_RS03665 -1.2 -2.6 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS20400 -1.2 -2.4 hypothetical protein compare
PFLU_RS22095 -1.2 -4.8 GTP diphosphokinase compare
PFLU_RS05345 -1.2 -1.4 hypothetical protein compare
PFLU_RS13765 -1.2 -1.1 hypothetical protein compare
PFLU_RS07540 -1.2 -1.4 class II glutamine amidotransferase compare
PFLU_RS26440 -1.2 -1.7 acyl carrier protein compare
PFLU_RS27640 -1.2 -1.2 alpha/beta fold hydrolase compare
PFLU_RS20025 -1.2 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13020 -1.2 -1.8 cobalamin biosynthesis protein compare
PFLU_RS20920 -1.2 -2.1 FadR family transcriptional regulator compare
PFLU_RS12505 -1.2 -3.1 helix-turn-helix transcriptional regulator compare
PFLU_RS21330 -1.2 -2.4 hypothetical protein compare
PFLU_RS14790 -1.2 -3.2 HPP family protein compare
PFLU_RS21725 -1.2 -5.4 flagellar motor switch protein FliM compare
PFLU_RS23130 -1.2 -3.8 response regulator transcription factor compare
PFLU_RS18755 -1.2 -4.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS29885 -1.2 -4.9 LysR family transcriptional regulator compare
PFLU_RS27975 -1.2 -2.7 choline ABC transporter ATP-binding protein compare
PFLU_RS04415 -1.2 -1.9 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS21755 -1.2 -5.2 flagella biosynthesis chaperone FliJ compare
PFLU_RS21300 -1.2 -1.6 cysteine hydrolase compare
PFLU_RS21705 -1.2 -4.2 flagellar biosynthesis protein FliQ compare
PFLU_RS25715 -1.2 -1.8 RNA polymerase-binding protein DksA compare
PFLU_RS17380 -1.2 -3.0 DUF924 family protein compare
PFLU_RS00695 -1.2 -0.9 DUF2789 domain-containing protein compare
PFLU_RS22470 -1.2 -1.2 hypothetical protein compare
PFLU_RS08685 -1.2 -4.7 c-type cytochrome biogenesis protein CcmI compare
PFLU_RS08905 -1.2 -2.9 hypothetical protein compare
PFLU_RS08125 -1.2 -1.8 integration host factor subunit beta compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas fluorescens SBW25-INTG

For carbon source 2-Deoxy-D-Ribose across organisms