Experiment set22IT001 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium pyruvate 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS10765 -7.0 -32.2 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS18410 -7.0 -28.2 response regulator compare
PFLU_RS19015 -6.0 -22.6 anti-sigma factor compare
PFLU_RS06430 -5.2 -37.6 RNA polymerase sigma factor RpoS compare
PFLU_RS20575 -4.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06055 -4.7 -3.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS21530 -4.6 -36.6 transporter substrate-binding domain-containing protein compare
PFLU_RS08660 -4.4 -4.2 heme exporter protein CcmD compare
PFLU_RS28695 -4.1 -6.9 phosphoglycerate dehydrogenase compare
PFLU_RS08675 -4.1 -2.8 DsbE family thiol:disulfide interchange protein compare
PFLU_RS25640 -4.1 -8.7 ketol-acid reductoisomerase compare
PFLU_RS20565 -4.0 -10.9 3-isopropylmalate dehydrogenase compare
PFLU_RS08665 -3.6 -5.9 cytochrome c maturation protein CcmE compare
PFLU_RS20580 -3.6 -10.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS08670 -3.6 -9.1 heme lyase CcmF/NrfE family subunit compare
PFLU_RS24765 -3.5 -19.8 2-isopropylmalate synthase compare
PFLU_RS28390 -3.4 -10.6 methionine biosynthesis protein MetW compare
PFLU_RS01620 -3.4 -6.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28385 -3.3 -13.3 homoserine O-acetyltransferase compare
PFLU_RS28535 -3.2 -14.1 dihydroxy-acid dehydratase compare
PFLU_RS27370 -3.2 -12.2 anthranilate phosphoribosyltransferase compare
PFLU_RS01900 -3.1 -6.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28165 -3.1 -11.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS29480 -3.1 -19.5 exodeoxyribonuclease III compare
PFLU_RS27365 -3.1 -9.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS02275 -3.0 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS25645 -3.0 -2.9 acetolactate synthase small subunit compare
PFLU_RS20510 -3.0 -13.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS14715 -3.0 -14.4 protein-glutamate O-methyltransferase CheR compare
PFLU_RS22600 -3.0 -6.2 RNA polymerase sigma factor SigX compare
PFLU_RS01605 -2.9 -8.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04465 -2.9 -8.9 ATP phosphoribosyltransferase compare
PFLU_RS07690 -2.9 -14.4 helix-turn-helix transcriptional regulator compare
PFLU_RS20515 -2.9 -4.4 amidophosphoribosyltransferase compare
PFLU_RS00175 -2.9 -5.4 tryptophan synthase subunit alpha compare
PFLU_RS00180 -2.8 -6.1 tryptophan synthase subunit beta compare
PFLU_RS20540 -2.7 -10.6 phosphoribosylanthranilate isomerase compare
PFLU_RS12980 -2.7 -9.2 nitrite/sulfite reductase compare
PFLU_RS01610 -2.7 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04470 -2.6 -10.7 histidinol dehydrogenase compare
PFLU_RS02490 -2.6 -12.0 phosphoserine phosphatase SerB compare
PFLU_RS22740 -2.5 -3.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS01625 -2.5 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS23380 -2.5 -2.9 HAD-IB family hydrolase compare
PFLU_RS02590 -2.4 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20290 -2.4 -3.2 integration host factor subunit alpha compare
PFLU_RS29290 -2.4 -6.0 hypothetical protein compare
PFLU_RS08655 -2.3 -5.9 heme ABC transporter permease compare
PFLU_RS18505 -2.3 -8.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS10325 -2.3 -9.7 MFS transporter compare
PFLU_RS08650 -2.2 -3.4 heme exporter protein CcmB compare
PFLU_RS12975 -2.2 -5.2 DUF934 domain-containing protein compare
PFLU_RS25360 -2.0 -7.2 glutamate 5-kinase compare
PFLU_RS10430 -1.9 -4.8 peptidase compare
PFLU_RS03970 -1.9 -8.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS02585 -1.9 -6.1 protease modulator HflC compare
PFLU_RS05630 -1.9 -2.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS08165 -1.8 -2.1 acyl carrier protein compare
PFLU_RS09055 -1.8 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS26210 -1.8 -13.3 carbon starvation protein A conserved
PFLU_RS23235 -1.8 -3.8 Arc family DNA-binding protein compare
PFLU_RS22520 -1.8 -4.4 GntR family transcriptional regulator compare
PFLU_RS24025 -1.8 -9.8 quinolinate synthase NadA compare
PFLU_RS26205 -1.7 -9.3 YbdD/YjiX family protein conserved
PFLU_RS17920 -1.7 -2.1 acyltransferase compare
PFLU_RS30790 -1.7 -1.8 hypothetical protein compare
PFLU_RS08920 -1.7 -9.4 DUF485 domain-containing protein conserved
PFLU_RS02580 -1.7 -8.1 FtsH protease activity modulator HflK compare
PFLU_RS13915 -1.7 -4.3 hypothetical protein compare
PFLU_RS23310 -1.7 -7.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01765 -1.6 -8.1 histidine utilization repressor compare
PFLU_RS02455 -1.6 -2.1 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS08925 -1.6 -12.4 cation acetate symporter conserved
PFLU_RS00870 -1.5 -2.0 hypothetical protein compare
PFLU_RS27700 -1.5 -6.2 3'-5' exonuclease conserved
PFLU_RS01910 -1.5 -1.4 sterol-binding protein compare
PFLU_RS23130 -1.5 -7.0 response regulator transcription factor compare
PFLU_RS18735 -1.5 -1.6 hypothetical protein compare
PFLU_RS30160 -1.5 -2.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS24245 -1.4 -7.4 PilZ domain-containing protein compare
PFLU_RS00460 -1.4 -10.0 glutamate/aspartate:proton symporter GltP compare
PFLU_RS22310 -1.4 -10.7 methyl-accepting chemotaxis protein compare
PFLU_RS23305 -1.4 -7.2 arginine N-succinyltransferase compare
PFLU_RS30165 -1.3 -5.1 ParA family protein compare
PFLU_RS24980 -1.3 -2.7 purine-binding chemotaxis protein CheW compare
PFLU_RS21110 -1.3 -2.9 AAA family ATPase compare
PFLU_RS22990 -1.3 -5.4 ADP-ribosylglycohydrolase compare
PFLU_RS18670 -1.3 -1.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS29810 -1.3 -8.1 LysR family transcriptional regulator compare
PFLU_RS12145 -1.2 -1.7 nuclear transport factor 2 family protein compare
PFLU_RS13365 -1.2 -1.4 hypothetical protein compare
PFLU_RS17060 -1.2 -2.1 monooxygenase compare
PFLU_RS28655 -1.2 -7.8 HAD family hydrolase compare
PFLU_RS18755 -1.2 -6.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS19550 -1.2 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS21740 -1.2 -4.6 Hpt domain-containing protein compare
PFLU_RS21725 -1.2 -7.4 flagellar motor switch protein FliM compare
PFLU_RS22105 -1.2 -3.1 cysteine synthase CysM compare
PFLU_RS30420 -1.1 -3.5 hypothetical protein compare
PFLU_RS17130 -1.1 -4.4 protein BatD compare
PFLU_RS21695 -1.1 -5.7 flagellar biosynthesis protein FlhB compare
PFLU_RS25220 -1.1 -5.9 ubiquinol oxidase subunit II compare
PFLU_RS07495 -1.1 -2.4 DUF2892 domain-containing protein compare
PFLU_RS25730 -1.1 -6.4 PAS domain S-box protein compare
PFLU_RS21775 -1.1 -8.4 flagellar basal body M-ring protein FliF compare
PFLU_RS05655 -1.1 -3.2 DeoR/GlpR family transcriptional regulator compare
PFLU_RS22190 -1.1 -1.0 hypothetical protein compare
PFLU_RS25205 -1.1 -3.8 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS00435 -1.1 -8.5 PAS domain-containing protein compare
PFLU_RS29815 -1.0 -3.8 aspartate ammonia-lyase compare
PFLU_RS02670 -1.0 -2.3 hypothetical protein compare
PFLU_RS00415 -1.0 -1.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS00695 -1.0 -1.0 DUF2789 domain-containing protein compare
PFLU_RS29780 -1.0 -4.8 acyl-CoA thioesterase compare
PFLU_RS21935 -1.0 -8.0 sensor histidine kinase compare
PFLU_RS26535 -1.0 -5.0 thiamine phosphate synthase compare
PFLU_RS15200 -1.0 -2.0 ABC transporter substrate-binding protein compare
PFLU_RS29515 -1.0 -5.8 RidA family protein compare
PFLU_RS21770 -1.0 -7.6 flagellar motor switch protein FliG compare
PFLU_RS26200 -1.0 -5.9 GTPase conserved
PFLU_RS21670 -1.0 -6.8 flagellar biosynthesis protein FlhF compare
PFLU_RS06570 -1.0 -2.5 glycine zipper 2TM domain-containing protein compare
PFLU_RS24330 -1.0 -3.6 phosphogluconate dehydratase compare
PFLU_RS22070 -1.0 -2.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS25215 -1.0 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS04660 -1.0 -3.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS21765 -1.0 -6.6 flagellar assembly protein FliH compare
PFLU_RS21900 -1.0 -2.4 hypothetical protein compare
PFLU_RS21700 -1.0 -5.5 flagellar type III secretion system protein FliR compare
PFLU_RS24590 -1.0 -2.5 cytochrome c assembly protein compare
PFLU_RS24205 -1.0 -1.3 DNA binding protein compare
PFLU_RS21675 -1.0 -8.4 flagellar biosynthesis protein FlhA compare
PFLU_RS23065 -1.0 -5.3 phosphate acyltransferase PlsX compare
PFLU_RS03250 -0.9 -1.4 heavy-metal-associated domain-containing protein compare
PFLU_RS07235 -0.9 -3.2 sigma factor AlgU negative regulatory protein compare
PFLU_RS27650 -0.9 -6.8 biotin synthase BioB compare
PFLU_RS07245 -0.9 -4.5 DegQ family serine endoprotease compare
PFLU_RS08125 -0.9 -2.1 integration host factor subunit beta compare
PFLU_RS18000 -0.9 -1.4 AhpC/TSA family protein compare
PFLU_RS19010 -0.9 -3.0 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS18635 -0.9 -1.3 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS13920 -0.9 -2.6 recombination protein NinG compare
PFLU_RS05910 -0.9 -1.1 response regulator transcription factor compare
PFLU_RS11100 -0.9 -3.4 integrase compare
PFLU_RS29505 -0.9 -3.2 DNA-directed RNA polymerase subunit omega compare
PFLU_RS21760 -0.9 -7.0 flagellar protein export ATPase FliI compare
PFLU_RS21520 -0.9 -2.6 thioesterase compare
PFLU_RS18625 -0.9 -2.5 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS13845 -0.9 -2.4 hypothetical protein compare
PFLU_RS24535 -0.9 -1.7 DUF3509 domain-containing protein compare
PFLU_RS22470 -0.9 -2.0 hypothetical protein compare
PFLU_RS03770 -0.9 -6.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS25200 -0.9 -4.8 protoheme IX farnesyltransferase compare
PFLU_RS27465 -0.9 -2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS29875 -0.9 -6.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS08185 -0.9 -5.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS21780 -0.9 -3.2 flagellar hook-basal body complex protein FliE compare
PFLU_RS21705 -0.9 -5.7 flagellar biosynthesis protein FliQ compare
PFLU_RS03765 -0.9 -5.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS15605 -0.8 -5.3 DMT family transporter compare
PFLU_RS19375 -0.8 -5.1 branched-chain amino acid aminotransferase compare
PFLU_RS15990 -0.8 -1.3 SDR family oxidoreductase compare
PFLU_RS21755 -0.8 -6.1 flagella biosynthesis chaperone FliJ compare
PFLU_RS18950 -0.8 -4.0 MerR family DNA-binding transcriptional regulator compare
PFLU_RS16935 -0.8 -1.7 CoA ester lyase compare
PFLU_RS26595 -0.8 -1.1 lipoprotein compare
PFLU_RS22645 -0.8 -6.1 EamA family transporter compare
PFLU_RS12230 -0.8 -2.8 carboxymuconolactone decarboxylase family protein compare
PFLU_RS21630 -0.8 -6.1 flagellar motor protein MotD compare
PFLU_RS01895 -0.8 -3.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21710 -0.8 -5.7 flagellar type III secretion system pore protein FliP compare
PFLU_RS18530 -0.8 -2.1 DNA translocase FtsK compare
PFLU_RS31755 -0.8 -1.2 hypothetical protein compare
PFLU_RS25735 -0.8 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS06310 -0.8 -4.1 sigma E protease regulator RseP compare
PFLU_RS23180 -0.8 -5.9 flagellar basal body rod protein FlgB compare
PFLU_RS29165 -0.8 -2.4 TIGR02444 family protein compare
PFLU_RS30510 -0.8 -2.5 glycosyltransferase family 4 protein compare
PFLU_RS11425 -0.8 -3.0 ammonium transporter compare
PFLU_RS18665 -0.8 -1.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS12945 -0.8 -2.1 hypothetical protein compare
PFLU_RS17265 -0.8 -1.6 hypothetical protein compare
PFLU_RS02115 -0.8 -1.7 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS21860 -0.8 -4.6 flagellar basal body rod protein FlgF compare
PFLU_RS25755 -0.8 -0.5 pantoate--beta-alanine ligase compare
PFLU_RS04715 -0.8 -2.8 D-alanine--D-alanine ligase compare
PFLU_RS17120 -0.8 -4.1 VWA domain-containing protein compare
PFLU_RS28310 -0.8 -1.0 response regulator compare
PFLU_RS25115 -0.8 -2.6 cytochrome c family protein compare
PFLU_RS11470 -0.8 -2.2 hypothetical protein compare
PFLU_RS24085 -0.8 -1.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21840 -0.8 -6.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS21635 -0.8 -4.0 flagellar motor protein compare
PFLU_RS21850 -0.8 -6.4 flagellar basal body L-ring protein FlgH compare
PFLU_RS18700 -0.8 -1.3 hypothetical protein compare
PFLU_RS13910 -0.8 -1.6 hypothetical protein compare
PFLU_RS23920 -0.8 -1.1 septation protein A compare
PFLU_RS31775 -0.8 -2.6 hypothetical protein compare
PFLU_RS29880 -0.8 -5.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS30505 -0.7 -2.6 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium pyruvate across organisms