Experiment set21IT092 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid 20 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS14050 +1.7 3.8 hypothetical protein compare
PFLU_RS31010 +1.2 2.2 transposase compare
PFLU_RS13665 +1.2 1.6 MarR family transcriptional regulator compare
PFLU_RS13365 +1.1 2.2 hypothetical protein compare
PFLU_RS24785 +1.0 7.0 outer membrane protein assembly factor BamB compare
PFLU_RS01960 +0.9 1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS13715 +0.8 1.6 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS00195 +0.8 2.1 dodecin domain-containing protein compare
PFLU_RS18705 +0.8 2.0 hypothetical protein compare
PFLU_RS19935 +0.8 1.9 type II secretion system protein GspF compare
PFLU_RS13945 +0.8 2.1 hypothetical protein compare
PFLU_RS18005 +0.8 2.5 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS04530 +0.8 1.6 hypothetical protein compare
PFLU_RS15800 +0.7 2.4 immunity 49 family protein compare
PFLU_RS02790 +0.7 1.9 TetR family transcriptional regulator compare
PFLU_RS27580 +0.7 2.2 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS18585 +0.7 1.5 high frequency lysogenization protein HflD compare
PFLU_RS24535 +0.7 1.6 DUF3509 domain-containing protein compare
PFLU_RS30660 +0.7 1.5 histidine phosphatase family protein compare
PFLU_RS13370 +0.7 0.8 DUF2790 domain-containing protein compare
PFLU_RS15910 +0.7 1.1 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS02215 +0.7 2.1 hypothetical protein compare
PFLU_RS26800 +0.6 2.8 hypothetical protein compare
PFLU_RS07250 +0.6 5.0 M48 family metallopeptidase compare
PFLU_RS20845 +0.6 1.1 hypothetical protein compare
PFLU_RS31800 +0.6 0.8 hypothetical protein compare
PFLU_RS20955 +0.6 0.8 DUF1028 domain-containing protein compare
PFLU_RS02455 +0.6 1.5 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS13975 +0.6 1.7 hypothetical protein compare
PFLU_RS31825 +0.6 2.5 hypothetical protein compare
PFLU_RS08575 +0.6 1.6 hypothetical protein compare
PFLU_RS14545 +0.6 1.5 hypothetical protein compare
PFLU_RS31530 +0.6 0.9 transposase compare
PFLU_RS30485 +0.6 2.4 hypothetical protein compare
PFLU_RS17370 +0.6 2.0 hypothetical protein compare
PFLU_RS14760 +0.6 2.2 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS04075 +0.6 1.2 hypothetical protein compare
PFLU_RS01500 +0.6 1.5 cell division protein FtsQ compare
PFLU_RS08370 +0.6 2.1 hypothetical protein compare
PFLU_RS08615 +0.6 1.7 YgdI/YgdR family lipoprotein compare
PFLU_RS11930 +0.5 1.4 biopolymer transporter ExbD compare
PFLU_RS22610 +0.5 2.4 hypothetical protein compare
PFLU_RS10980 +0.5 2.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS03540 +0.5 2.1 type III secretion protein compare
PFLU_RS20150 +0.5 2.5 response regulator compare
PFLU_RS05105 +0.5 1.6 tetratricopeptide repeat protein compare
PFLU_RS05800 +0.5 2.2 phage baseplate protein compare
PFLU_RS26145 +0.5 0.5 hypothetical protein compare
PFLU_RS24670 +0.5 1.0 HigA family addiction module antidote protein compare
PFLU_RS15035 +0.5 2.6 amino acid synthesis family protein compare
PFLU_RS13065 +0.5 2.6 ser/threonine protein phosphatase compare
PFLU_RS17660 +0.5 2.3 DUF2946 domain-containing protein compare
PFLU_RS20705 +0.5 2.6 hypothetical protein compare
PFLU_RS13215 +0.5 1.3 LysR family transcriptional regulator compare
PFLU_RS04565 +0.5 0.8 TMEM165/GDT1 family protein compare
PFLU_RS22190 +0.5 0.9 hypothetical protein compare
PFLU_RS30500 +0.5 2.0 LapA family protein compare
PFLU_RS24015 +0.5 1.5 cold-shock protein compare
PFLU_RS00390 +0.5 1.9 DUF2782 domain-containing protein compare
PFLU_RS15760 +0.5 2.2 general secretion pathway protein GspL compare
PFLU_RS24980 +0.5 1.4 purine-binding chemotaxis protein CheW compare
PFLU_RS30865 +0.5 1.8 transposase compare
PFLU_RS21795 +0.5 4.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08285 +0.5 1.9 hypothetical protein compare
PFLU_RS22645 +0.5 3.8 EamA family transporter compare
PFLU_RS23175 +0.5 3.2 flagellar basal body rod protein FlgC compare
PFLU_RS31465 +0.4 2.6 hypothetical protein compare
PFLU_RS17815 +0.4 1.2 response regulator compare
PFLU_RS15955 +0.4 2.1 4-hydroxy-2-oxoheptanedioate aldolase compare
PFLU_RS26595 +0.4 1.1 lipoprotein compare
PFLU_RS03930 +0.4 1.8 DNA gyrase inhibitor YacG compare
PFLU_RS06250 +0.4 1.9 ArsC family reductase compare
PFLU_RS30985 +0.4 1.5 hypothetical protein compare
PFLU_RS12455 +0.4 2.6 N(5)-hydroxyornithine transformylase PvdF compare
PFLU_RS26690 +0.4 1.7 hypothetical protein compare
PFLU_RS29315 +0.4 1.6 hypothetical protein compare
PFLU_RS06570 +0.4 1.2 glycine zipper 2TM domain-containing protein compare
PFLU_RS24300 +0.4 1.2 hypothetical protein compare
PFLU_RS31275 +0.4 0.6 hypothetical protein compare
PFLU_RS18515 +0.4 1.1 fluoride efflux transporter CrcB compare
PFLU_RS13350 +0.4 0.7 ParD-like family protein compare
PFLU_RS15200 +0.4 1.1 ABC transporter substrate-binding protein compare
PFLU_RS28270 +0.4 1.1 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS01005 +0.4 0.6 ABC transporter ATP-binding protein compare
PFLU_RS21860 +0.4 2.3 flagellar basal body rod protein FlgF compare
PFLU_RS15880 +0.4 1.9 LysR family transcriptional regulator compare
PFLU_RS11740 +0.4 2.6 NAD(P)-binding protein compare
PFLU_RS03790 +0.4 1.8 peptidylprolyl isomerase compare
PFLU_RS14770 +0.4 2.0 acyl-CoA dehydrogenase compare
PFLU_RS24620 +0.4 1.8 gamma carbonic anhydrase family protein compare
PFLU_RS18400 +0.4 2.4 DNA internalization-related competence protein ComEC/Rec2 compare
PFLU_RS15865 +0.4 1.9 cytochrome P450 compare
PFLU_RS19730 +0.4 1.2 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS17085 +0.4 1.7 GntR family transcriptional regulator compare
PFLU_RS05585 +0.4 1.2 MtnX-like HAD-IB family phosphatase compare
PFLU_RS19915 +0.4 0.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS03425 +0.4 1.8 hypothetical protein compare
PFLU_RS29620 +0.4 2.2 type VI secretion system-associated FHA domain protein TagH compare
PFLU_RS00065 +0.4 1.9 lysophospholipid acyltransferase compare
PFLU_RS28315 +0.4 0.4 response regulator compare
PFLU_RS00750 +0.4 1.8 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
PFLU_RS04605 +0.4 2.5 membrane integrity-associated transporter subunit PqiC compare
PFLU_RS20185 +0.4 1.5 hypothetical protein compare
PFLU_RS27915 +0.4 0.9 DUF3010 family protein compare
PFLU_RS22395 +0.4 1.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS19475 +0.4 1.4 Zn-dependent hydrolase compare
PFLU_RS17580 +0.4 0.9 repressor LexA compare
PFLU_RS08760 +0.4 0.9 phosphonate C-P lyase system protein PhnG compare
PFLU_RS28250 +0.4 1.2 malonate decarboxylase holo-ACP synthase compare
PFLU_RS13995 +0.4 1.7 hypothetical protein compare
PFLU_RS27790 +0.4 1.7 hypothetical protein compare
PFLU_RS21595 +0.4 2.0 sensor histidine kinase compare
PFLU_RS21650 +0.4 2.2 protein phosphatase CheZ compare
PFLU_RS07520 +0.4 0.6 hypothetical protein compare
PFLU_RS09060 +0.4 1.9 DUF4389 domain-containing protein compare
PFLU_RS17355 +0.4 1.3 creatininase family protein compare
PFLU_RS16815 +0.4 1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS25385 +0.4 2.1 alkylphosphonate utilization protein compare
PFLU_RS31645 +0.4 1.2 hypothetical protein compare
PFLU_RS20730 +0.4 0.6 hypothetical protein compare
PFLU_RS16960 +0.4 1.3 LysR family transcriptional regulator compare
PFLU_RS02630 +0.4 1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
PFLU_RS04360 +0.4 1.8 class II fumarate hydratase compare
PFLU_RS23205 +0.4 2.7 flagellar protein FlgN compare
PFLU_RS05230 +0.4 1.6 DNA polymerase III subunit chi compare
PFLU_RS02510 +0.4 2.9 flagellar motor stator protein MotA compare
PFLU_RS11285 +0.3 1.2 hypothetical protein compare
PFLU_RS23005 +0.3 2.6 DUF4823 domain-containing protein compare
PFLU_RS04660 +0.3 1.6 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS07460 +0.3 1.5 class I SAM-dependent methyltransferase compare
PFLU_RS23170 +0.3 2.2 flagellar hook assembly protein FlgD compare
PFLU_RS17595 +0.3 1.8 GDP-mannose pyrophosphatase compare
PFLU_RS31620 +0.3 1.2 integrase compare
PFLU_RS15755 +0.3 0.9 type II secretion system protein M compare
PFLU_RS31255 +0.3 1.8 hypothetical protein compare
PFLU_RS19875 +0.3 1.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS17160 +0.3 1.0 hypothetical protein compare
PFLU_RS18135 +0.3 1.5 ABC transporter substrate-binding protein compare
PFLU_RS03600 +0.3 1.5 hypothetical protein compare
PFLU_RS17045 +0.3 1.2 SDR family oxidoreductase compare
PFLU_RS17525 +0.3 1.0 NUDIX domain-containing protein compare
PFLU_RS05720 +0.3 2.7 OmpA family protein compare
PFLU_RS12945 +0.3 0.9 hypothetical protein compare
PFLU_RS09685 +0.3 1.4 hypothetical protein compare
PFLU_RS00825 +0.3 2.0 DUF4810 domain-containing protein compare
PFLU_RS12365 +0.3 1.6 IclR family transcriptional regulator compare
PFLU_RS13835 +0.3 1.6 phage recombination protein Bet compare
PFLU_RS21845 +0.3 2.4 flagellar basal body P-ring protein FlgI compare
PFLU_RS23195 +0.3 2.8 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS05040 +0.3 1.4 DUF1120 domain-containing protein compare
PFLU_RS06095 +0.3 2.0 alpha/beta hydrolase compare
PFLU_RS19070 +0.3 1.4 LysR family transcriptional regulator compare
PFLU_RS20920 +0.3 1.5 FadR family transcriptional regulator compare
PFLU_RS19900 +0.3 0.8 general secretion pathway protein GspM compare
PFLU_RS24930 +0.3 1.1 hypothetical protein compare
PFLU_RS18110 +0.3 1.7 GlxA family transcriptional regulator compare
PFLU_RS24470 +0.3 1.8 MGMT family protein compare
PFLU_RS28120 +0.3 1.3 DUF1090 domain-containing protein compare
PFLU_RS10070 +0.3 2.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS18885 +0.3 0.8 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS23895 +0.3 0.9 DUF1289 domain-containing protein compare
PFLU_RS15730 +0.3 2.0 ABC transporter ATP-binding protein/permease compare
PFLU_RS09720 +0.3 0.8 single-stranded DNA-binding protein compare
PFLU_RS04570 +0.3 1.3 class I SAM-dependent methyltransferase compare
PFLU_RS00530 +0.3 0.8 DUF2388 domain-containing protein compare
PFLU_RS21835 +0.3 2.8 flagellar hook-associated protein FlgK compare
PFLU_RS06230 +0.3 1.5 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
PFLU_RS17760 +0.3 1.2 HAMP domain-containing protein compare
PFLU_RS01200 +0.3 2.1 hypothetical protein compare
PFLU_RS08260 +0.3 1.3 CHAD domain-containing protein compare
PFLU_RS14630 +0.3 1.9 SDR family oxidoreductase compare
PFLU_RS30390 +0.3 0.9 type III secretion system rspB compare
PFLU_RS19520 +0.3 1.0 substrate-binding domain-containing protein compare
PFLU_RS29295 +0.3 1.2 YjbQ family protein compare
PFLU_RS17135 +0.3 1.7 exonuclease subunit SbcD compare
PFLU_RS14525 +0.3 1.2 c-type cytochrome compare
PFLU_RS15110 +0.3 1.3 aldehyde dehydrogenase family protein compare
PFLU_RS15830 +0.3 0.9 His-Xaa-Ser system protein HxsD compare
PFLU_RS15100 +0.3 1.5 helix-turn-helix domain-containing protein compare
PFLU_RS03270 +0.3 1.7 antibiotic biosynthesis monooxygenase compare
PFLU_RS22280 +0.3 1.5 hypothetical protein compare
PFLU_RS26520 +0.3 2.3 acyl-CoA dehydrogenase compare
PFLU_RS24020 +0.3 1.8 RDD family protein compare
PFLU_RS29360 +0.3 0.6 cytochrome c5 family protein compare
PFLU_RS18350 +0.3 0.7 GIY-YIG nuclease family protein compare
PFLU_RS15020 +0.3 1.6 helix-turn-helix domain-containing protein compare
PFLU_RS14355 +0.3 0.7 DUF2388 domain-containing protein compare
PFLU_RS31005 +0.3 1.1 tyrosine-type recombinase/integrase compare
PFLU_RS29300 +0.3 2.2 ammonium transporter compare
PFLU_RS30855 +0.3 1.2 MerR family transcriptional regulator compare
PFLU_RS11900 +0.3 1.2 type II secretion system protein GspF compare
PFLU_RS15765 +0.3 1.2 general secretion pathway protein GspK compare
PFLU_RS19705 +0.3 1.6 amino acid ABC transporter permease compare
PFLU_RS18015 +0.3 1.1 energy transducer TonB compare
PFLU_RS15575 +0.3 1.1 fumarylacetoacetate hydrolase family protein compare
PFLU_RS13500 +0.3 2.0 CAP domain-containing protein compare
PFLU_RS30725 +0.3 1.1 DUF1652 domain-containing protein compare
PFLU_RS12775 +0.3 1.4 TerC family protein compare
PFLU_RS16665 +0.3 1.1 cysteine hydrolase compare
PFLU_RS01440 +0.3 1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source D,L-Malic Acid across organisms