Experiment set21IT091 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -4.8 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28535 -4.3 -17.1 dihydroxy-acid dehydratase compare
PFLU_RS25640 -4.2 -13.0 ketol-acid reductoisomerase compare
PFLU_RS20580 -4.2 -13.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23065 -4.2 -10.7 phosphate acyltransferase PlsX compare
PFLU_RS28695 -4.1 -10.1 phosphoglycerate dehydrogenase compare
PFLU_RS28385 -3.9 -16.2 homoserine O-acetyltransferase compare
PFLU_RS20510 -3.9 -15.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20565 -3.9 -16.0 3-isopropylmalate dehydrogenase compare
PFLU_RS24765 -3.9 -22.6 2-isopropylmalate synthase compare
PFLU_RS28390 -3.8 -12.6 methionine biosynthesis protein MetW compare
PFLU_RS01605 -3.8 -9.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS12980 -3.7 -10.1 nitrite/sulfite reductase compare
PFLU_RS01620 -3.6 -10.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01610 -3.6 -13.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28165 -3.5 -12.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04470 -3.5 -13.8 histidinol dehydrogenase compare
PFLU_RS25940 -3.5 -27.5 FCD domain-containing protein compare
PFLU_RS02490 -3.4 -16.0 phosphoserine phosphatase SerB compare
PFLU_RS00180 -3.4 -8.0 tryptophan synthase subunit beta compare
PFLU_RS23070 -3.3 -2.2 50S ribosomal protein L32 compare
PFLU_RS12975 -3.3 -5.0 DUF934 domain-containing protein compare
PFLU_RS20515 -3.3 -5.4 amidophosphoribosyltransferase compare
PFLU_RS01900 -3.2 -8.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28655 -3.2 -14.1 HAD family hydrolase compare
PFLU_RS27365 -3.1 -12.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS18505 -3.1 -10.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS00175 -3.1 -8.1 tryptophan synthase subunit alpha compare
PFLU_RS10765 -3.0 -15.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS02275 -3.0 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS20540 -3.0 -12.1 phosphoribosylanthranilate isomerase compare
PFLU_RS27370 -2.9 -14.3 anthranilate phosphoribosyltransferase compare
PFLU_RS23115 -2.8 -17.0 dicarboxylate/amino acid:cation symporter compare
PFLU_RS29515 -2.8 -13.0 RidA family protein compare
PFLU_RS01625 -2.8 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS22070 -2.8 -5.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS19015 -2.8 -13.3 anti-sigma factor compare
PFLU_RS02590 -2.8 -10.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS04465 -2.7 -10.8 ATP phosphoribosyltransferase compare
PFLU_RS03970 -2.6 -12.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS24205 -2.6 -2.5 DNA binding protein compare
PFLU_RS01895 -2.6 -8.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS18410 -2.5 -7.4 response regulator compare
PFLU_RS23310 -2.5 -9.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS09055 -2.3 -2.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25360 -2.3 -8.9 glutamate 5-kinase compare
PFLU_RS24025 -2.2 -11.3 quinolinate synthase NadA compare
PFLU_RS04165 -2.2 -5.9 cell division protein ZapE compare
PFLU_RS23305 -2.2 -10.6 arginine N-succinyltransferase compare
PFLU_RS25735 -2.2 -5.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08650 -2.2 -2.0 heme exporter protein CcmB compare
PFLU_RS01400 -2.1 -12.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00415 -2.1 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25755 -2.1 -1.4 pantoate--beta-alanine ligase compare
PFLU_RS18670 -2.1 -2.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS22600 -2.1 -3.5 RNA polymerase sigma factor SigX compare
PFLU_RS22740 -2.0 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS08670 -1.8 -6.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS25750 -1.8 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS08410 -1.8 -9.5 HTH-type transcriptional regulator CysB compare
PFLU_RS13540 -1.8 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS21985 -1.7 -4.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS08665 -1.7 -4.3 cytochrome c maturation protein CcmE compare
PFLU_RS05690 -1.7 -1.6 Grx4 family monothiol glutaredoxin compare
PFLU_RS22030 -1.7 -3.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS25645 -1.7 -2.8 acetolactate synthase small subunit compare
PFLU_RS29095 -1.7 -14.3 polyphosphate kinase 1 compare
PFLU_RS18530 -1.7 -4.0 DNA translocase FtsK compare
PFLU_RS22105 -1.6 -4.3 cysteine synthase CysM compare
PFLU_RS30160 -1.6 -2.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS01320 -1.5 -8.1 phosphoenolpyruvate carboxykinase compare
PFLU_RS02050 -1.5 -11.3 NAD(P)-binding protein compare
PFLU_RS23920 -1.5 -1.6 septation protein A compare
PFLU_RS02825 -1.5 -2.1 phosphate starvation-inducible protein PsiF compare
PFLU_RS18675 -1.5 -2.7 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS03765 -1.4 -8.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS18420 -1.4 -2.7 hypothetical protein compare
PFLU_RS28965 -1.4 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS24095 -1.4 -1.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS03770 -1.3 -9.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS28690 -1.3 -9.2 FAD-binding oxidoreductase compare
PFLU_RS08655 -1.3 -3.1 heme ABC transporter permease compare
PFLU_RS18665 -1.3 -2.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS02975 -1.3 -6.8 precorrin-3B synthase compare
PFLU_RS01685 -1.3 -4.1 nitrogen regulation protein NR(I) compare
PFLU_RS27380 -1.3 -7.9 anthranilate synthase component I compare
PFLU_RS03075 -1.3 -1.9 translation initiation factor Sui1 compare
PFLU_RS06055 -1.2 -0.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08490 -1.2 -1.9 DEAD/DEAH box helicase compare
PFLU_RS26145 -1.2 -2.1 hypothetical protein compare
PFLU_RS18735 -1.2 -1.2 hypothetical protein compare
PFLU_RS22835 -1.2 -6.6 amidotransferase compare
PFLU_RS04075 -1.2 -1.0 hypothetical protein compare
PFLU_RS02045 -1.2 -10.0 glutamate synthase large subunit compare
PFLU_RS30165 -1.2 -5.3 ParA family protein compare
PFLU_RS02980 -1.2 -1.7 precorrin-8X methylmutase compare
PFLU_RS25740 -1.1 -3.8 polynucleotide adenylyltransferase PcnB compare
PFLU_RS31830 -1.1 -1.1 hypothetical protein compare
PFLU_RS04140 -1.1 -2.3 response regulator transcription factor compare
PFLU_RS07665 -1.1 -1.8 type I DNA topoisomerase compare
PFLU_RS15785 -1.1 -3.2 type II secretion system protein GspH compare
PFLU_RS24125 -1.1 -1.5 cold-shock protein compare
PFLU_RS18625 -1.1 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS18655 -1.1 -1.9 NADH-quinone oxidoreductase subunit J compare
PFLU_RS20660 -1.1 -7.9 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS25875 -1.1 -3.1 transcription elongation factor GreA compare
PFLU_RS04475 -1.1 -6.6 histidinol-phosphate transaminase compare
PFLU_RS24090 -1.1 -2.1 Holliday junction branch migration protein RuvA compare
PFLU_RS22025 -1.1 -8.1 cobyrinate a,c-diamide synthase compare
PFLU_RS13015 -1.1 -3.8 precorrin-4 C(11)-methyltransferase compare
PFLU_RS18640 -1.0 -2.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS13085 -1.0 -3.0 DUF1315 family protein compare
PFLU_RS08660 -1.0 -1.8 heme exporter protein CcmD compare
PFLU_RS22095 -1.0 -8.0 GTP diphosphokinase compare
PFLU_RS01995 -1.0 -7.1 malate dehydrogenase compare
PFLU_RS13000 -1.0 -7.5 methionine synthase compare
PFLU_RS07275 -1.0 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS11885 -1.0 -1.8 type II secretion system protein M compare
PFLU_RS13035 -1.0 -2.5 cobalamin biosynthesis protein CobW compare
PFLU_RS11525 -1.0 -3.0 GntR family transcriptional regulator compare
PFLU_RS25800 -1.0 -4.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS18645 -1.0 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS04505 -1.0 -3.8 hypothetical protein compare
PFLU_RS01315 -1.0 -1.6 Hsp33 family molecular chaperone HslO compare
PFLU_RS13040 -1.0 -6.9 cobaltochelatase subunit CobN compare
PFLU_RS13895 -0.9 -1.5 helix-turn-helix transcriptional regulator compare
PFLU_RS25715 -0.9 -5.5 RNA polymerase-binding protein DksA compare
PFLU_RS27650 -0.9 -7.4 biotin synthase BioB compare
PFLU_RS06855 -0.9 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS12660 -0.9 -4.2 hypothetical protein compare
PFLU_RS07255 -0.9 -2.9 sulfurtransferase TusA family protein compare
PFLU_RS14715 -0.9 -6.1 protein-glutamate O-methyltransferase CheR compare
PFLU_RS28315 -0.9 -1.0 response regulator compare
PFLU_RS13045 -0.9 -3.6 AAA domain-containing protein compare
PFLU_RS06430 -0.9 -7.1 RNA polymerase sigma factor RpoS compare
PFLU_RS05885 -0.9 -2.4 recombinase RecA compare
PFLU_RS02625 -0.9 -6.3 ribonuclease R compare
PFLU_RS24860 -0.9 -2.3 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS21530 -0.9 -7.5 transporter substrate-binding domain-containing protein compare
PFLU_RS03665 -0.9 -3.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS04220 -0.9 -5.0 FadR family transcriptional regulator compare
PFLU_RS28195 -0.8 -6.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS29480 -0.8 -5.9 exodeoxyribonuclease III compare
PFLU_RS22010 -0.8 -4.0 threonine-phosphate decarboxylase compare
PFLU_RS31490 -0.8 -1.4 hypothetical protein compare
PFLU_RS14075 -0.8 -2.8 hypothetical protein compare
PFLU_RS02565 -0.8 -2.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS21925 -0.8 -2.7 YecA family protein compare
PFLU_RS31800 -0.8 -1.5 hypothetical protein compare
PFLU_RS06320 -0.8 -2.4 OmpH family outer membrane protein compare
PFLU_RS27375 -0.8 -2.5 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS27475 -0.8 -4.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS02205 -0.8 -5.2 potassium/proton antiporter compare
PFLU_RS11980 -0.8 -3.8 precorrin-6A synthase (deacetylating) compare
PFLU_RS00070 -0.8 -2.1 tetratricopeptide repeat protein compare
PFLU_RS22015 -0.8 -4.9 cobalamin biosynthesis protein compare
PFLU_RS18125 -0.8 -1.6 ABC transporter ATP-binding protein compare
PFLU_RS28665 -0.8 -6.1 threonine ammonia-lyase, biosynthetic compare
PFLU_RS19170 -0.8 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS04835 -0.8 -1.1 hypothetical protein compare
PFLU_RS02965 -0.8 -4.9 cobalt-precorrin-6A reductase compare
PFLU_RS18755 -0.8 -4.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS15990 -0.8 -1.8 SDR family oxidoreductase compare
PFLU_RS15165 -0.8 -1.6 RidA family protein compare
PFLU_RS27640 -0.8 -1.7 alpha/beta fold hydrolase compare
PFLU_RS22520 -0.8 -1.9 GntR family transcriptional regulator compare
PFLU_RS26535 -0.8 -4.3 thiamine phosphate synthase compare
PFLU_RS01405 -0.8 -4.1 sensor histidine kinase compare
PFLU_RS27840 -0.7 -2.2 hypothetical protein compare
PFLU_RS22000 -0.7 -3.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS21990 -0.7 -3.5 alpha-ribazole phosphatase family protein compare
PFLU_RS27635 -0.7 -4.6 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS13885 -0.7 -1.9 hypothetical protein compare
PFLU_RS13640 -0.7 -2.1 isochorismatase family protein compare
PFLU_RS20290 -0.7 -1.0 integration host factor subunit alpha compare
PFLU_RS14440 -0.7 -1.4 hypothetical protein compare
PFLU_RS28320 -0.7 -1.2 glutathione synthase compare
PFLU_RS01615 -0.7 -2.1 DUF2164 domain-containing protein compare
PFLU_RS15310 -0.7 -1.2 YgdI/YgdR family lipoprotein compare
PFLU_RS04715 -0.7 -3.2 D-alanine--D-alanine ligase compare
PFLU_RS04070 -0.7 -1.4 peptide chain release factor 3 compare
PFLU_RS29255 -0.7 -2.1 iron donor protein CyaY compare
PFLU_RS02985 -0.7 -4.7 precorrin-2 C(20)-methyltransferase compare
PFLU_RS25210 -0.7 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS15205 -0.7 -1.9 ribose ABC transporter permease compare
PFLU_RS02990 -0.7 -2.8 precorrin-3B C(17)-methyltransferase compare
PFLU_RS07690 -0.7 -3.9 helix-turn-helix transcriptional regulator compare
PFLU_RS22005 -0.7 -4.6 cobyric acid synthase compare
PFLU_RS27645 -0.7 -5.2 8-amino-7-oxononanoate synthase compare
PFLU_RS10835 -0.7 -1.6 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS03610 -0.7 -2.3 redox-regulated ATPase YchF compare
PFLU_RS13250 -0.7 -2.9 sugar kinase compare
PFLU_RS16310 -0.7 -1.0 hypothetical protein compare
PFLU_RS24160 -0.7 -3.3 HAMP domain-containing protein compare
PFLU_RS06650 -0.7 -2.0 DUF2288 domain-containing protein compare
PFLU_RS21645 -0.7 -4.5 chemotaxis protein CheA compare
PFLU_RS15420 -0.7 -2.3 hypothetical protein compare
PFLU_RS31510 -0.7 -1.0 transcriptional regulator compare
PFLU_RS23590 -0.7 -1.0 gluconokinase compare
PFLU_RS16445 -0.7 -2.1 PIG-L family deacetylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source D,L-Malic Acid across organisms