Experiment set21IT088 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Alanine 15 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28390 -4.5 -9.6 methionine biosynthesis protein MetW compare
PFLU_RS28385 -4.3 -13.7 homoserine O-acetyltransferase compare
PFLU_RS29385 -4.2 -20.4 AsnC family transcriptional regulator conserved
PFLU_RS10765 -4.2 -20.2 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS20575 -4.1 -6.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28535 -4.0 -16.2 dihydroxy-acid dehydratase compare
PFLU_RS25640 -4.0 -12.2 ketol-acid reductoisomerase compare
PFLU_RS20580 -4.0 -11.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28695 -4.0 -9.3 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.0 -14.4 phosphoserine phosphatase SerB compare
PFLU_RS27370 -3.9 -12.7 anthranilate phosphoribosyltransferase compare
PFLU_RS27365 -3.8 -10.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01610 -3.8 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00180 -3.7 -6.2 tryptophan synthase subunit beta compare
PFLU_RS04470 -3.7 -11.8 histidinol dehydrogenase compare
PFLU_RS25940 -3.7 -28.8 FCD domain-containing protein compare
PFLU_RS20565 -3.7 -14.5 3-isopropylmalate dehydrogenase compare
PFLU_RS29380 -3.6 -14.4 D-amino acid dehydrogenase compare
PFLU_RS24765 -3.6 -20.9 2-isopropylmalate synthase compare
PFLU_RS20540 -3.6 -9.7 phosphoribosylanthranilate isomerase compare
PFLU_RS01620 -3.5 -9.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18410 -3.5 -8.8 response regulator compare
PFLU_RS06055 -3.4 -3.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04465 -3.3 -10.1 ATP phosphoribosyltransferase compare
PFLU_RS25360 -3.3 -9.0 glutamate 5-kinase compare
PFLU_RS05475 -3.2 -12.1 amino acid permease conserved
PFLU_RS02590 -3.2 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS00175 -3.1 -7.0 tryptophan synthase subunit alpha compare
PFLU_RS28645 -3.0 -17.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01605 -2.9 -8.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01645 -2.9 -6.1 S41 family peptidase compare
PFLU_RS20515 -2.8 -5.6 amidophosphoribosyltransferase compare
PFLU_RS29515 -2.8 -12.5 RidA family protein compare
PFLU_RS19015 -2.8 -15.5 anti-sigma factor compare
PFLU_RS03645 -2.7 -4.2 tetratricopeptide repeat protein compare
PFLU_RS01900 -2.7 -8.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23305 -2.7 -10.2 arginine N-succinyltransferase compare
PFLU_RS20510 -2.7 -13.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS03995 -2.6 -2.5 hypothetical protein compare
PFLU_RS01625 -2.6 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25735 -2.6 -4.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02050 -2.6 -16.6 NAD(P)-binding protein compare
PFLU_RS29880 -2.5 -14.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12980 -2.4 -9.2 nitrite/sulfite reductase compare
PFLU_RS25715 -2.4 -8.1 RNA polymerase-binding protein DksA compare
PFLU_RS28165 -2.4 -11.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01895 -2.4 -7.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS09720 -2.3 -3.0 single-stranded DNA-binding protein compare
PFLU_RS02275 -2.3 -3.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS28655 -2.3 -12.7 HAD family hydrolase compare
PFLU_RS29875 -2.2 -14.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23070 -2.2 -1.7 50S ribosomal protein L32 compare
PFLU_RS29095 -2.2 -17.8 polyphosphate kinase 1 compare
PFLU_RS24025 -2.1 -11.3 quinolinate synthase NadA compare
PFLU_RS25730 -2.1 -11.3 PAS domain S-box protein compare
PFLU_RS23310 -2.0 -8.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS18505 -2.0 -8.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22095 -2.0 -12.9 GTP diphosphokinase compare
PFLU_RS00415 -2.0 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29885 -2.0 -10.7 LysR family transcriptional regulator compare
PFLU_RS25755 -2.0 -1.4 pantoate--beta-alanine ligase compare
PFLU_RS26595 -2.0 -2.6 lipoprotein compare
PFLU_RS18640 -1.9 -3.3 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS18670 -1.9 -2.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS03970 -1.9 -8.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25225 -1.9 -6.6 disulfide bond formation protein B compare
PFLU_RS22740 -1.9 -3.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS09055 -1.8 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS04220 -1.8 -7.9 FadR family transcriptional regulator compare
PFLU_RS26545 -1.7 -8.4 sel1 repeat family protein compare
PFLU_RS13540 -1.7 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25800 -1.7 -6.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS07810 -1.7 -12.0 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS22105 -1.7 -3.9 cysteine synthase CysM compare
PFLU_RS00310 -1.7 -2.2 twin transmembrane helix small protein compare
PFLU_RS07665 -1.7 -2.1 type I DNA topoisomerase compare
PFLU_RS02045 -1.6 -14.0 glutamate synthase large subunit compare
PFLU_RS12975 -1.6 -4.5 DUF934 domain-containing protein compare
PFLU_RS24085 -1.6 -2.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS18530 -1.6 -3.3 DNA translocase FtsK compare
PFLU_RS23065 -1.6 -7.9 phosphate acyltransferase PlsX compare
PFLU_RS31275 -1.5 -1.4 hypothetical protein compare
PFLU_RS18645 -1.5 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS15410 -1.5 -2.0 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24090 -1.5 -1.4 Holliday junction branch migration protein RuvA compare
PFLU_RS22070 -1.4 -3.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08505 -1.4 -6.4 protease HtpX compare
PFLU_RS22600 -1.4 -2.7 RNA polymerase sigma factor SigX compare
PFLU_RS06320 -1.4 -3.0 OmpH family outer membrane protein compare
PFLU_RS25595 -1.4 -1.0 exodeoxyribonuclease V subunit gamma compare
PFLU_RS08675 -1.4 -2.8 DsbE family thiol:disulfide interchange protein compare
PFLU_RS29490 -1.4 -5.4 ribonuclease PH compare
PFLU_RS27650 -1.4 -9.8 biotin synthase BioB compare
PFLU_RS05655 -1.4 -2.7 DeoR/GlpR family transcriptional regulator compare
PFLU_RS18655 -1.4 -1.7 NADH-quinone oxidoreductase subunit J compare
PFLU_RS29550 -1.3 -5.4 ATP-dependent DNA helicase RecG compare
PFLU_RS05780 -1.3 -7.0 helix-turn-helix transcriptional regulator compare
PFLU_RS20715 -1.3 -2.1 iron ABC transporter permease compare
PFLU_RS29750 -1.3 -4.4 phosphate signaling complex protein PhoU compare
PFLU_RS04150 -1.3 -5.0 DUF1043 family protein compare
PFLU_RS19165 -1.2 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS09190 -1.2 -2.7 hypothetical protein compare
PFLU_RS18675 -1.2 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS18635 -1.2 -2.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS03770 -1.2 -8.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS15205 -1.2 -2.6 ribose ABC transporter permease compare
PFLU_RS28195 -1.2 -9.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS19170 -1.2 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS27375 -1.2 -4.7 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS18940 -1.2 -6.6 acyl-CoA dehydrogenase compare
PFLU_RS12715 -1.2 -1.7 fumarylacetoacetate hydrolase family protein compare
PFLU_RS31635 -1.2 -2.6 IS21 family transposase compare
PFLU_RS31755 -1.1 -1.7 hypothetical protein compare
PFLU_RS12580 -1.1 -6.1 MurR/RpiR family transcriptional regulator compare
PFLU_RS24095 -1.1 -1.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS08665 -1.1 -3.0 cytochrome c maturation protein CcmE compare
PFLU_RS22630 -1.1 -8.8 phosphoenolpyruvate synthase compare
PFLU_RS24125 -1.1 -1.1 cold-shock protein compare
PFLU_RS30030 -1.1 -1.0 membrane protein compare
PFLU_RS03765 -1.1 -6.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS08670 -1.1 -4.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04140 -1.1 -1.8 response regulator transcription factor compare
PFLU_RS00895 -1.1 -2.9 hypothetical protein compare
PFLU_RS24015 -1.1 -2.1 cold-shock protein compare
PFLU_RS29375 -1.1 -2.7 RidA family protein compare
PFLU_RS14820 -1.1 -3.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS29275 -1.1 -4.0 DUF484 family protein compare
PFLU_RS30165 -1.1 -4.7 ParA family protein compare
PFLU_RS22455 -1.1 -5.2 hypothetical protein compare
PFLU_RS27640 -1.0 -2.1 alpha/beta fold hydrolase compare
PFLU_RS28690 -1.0 -7.6 FAD-binding oxidoreductase compare
PFLU_RS03585 -1.0 -2.2 hypothetical protein compare
PFLU_RS27380 -1.0 -7.2 anthranilate synthase component I compare
PFLU_RS06430 -1.0 -8.0 RNA polymerase sigma factor RpoS compare
PFLU_RS21530 -1.0 -8.5 transporter substrate-binding domain-containing protein compare
PFLU_RS01055 -1.0 -4.5 energy transducer TonB compare
PFLU_RS21645 -1.0 -5.5 chemotaxis protein CheA compare
PFLU_RS23185 -1.0 -7.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS20520 -1.0 -5.3 colicin V production protein CvpA compare
PFLU_RS31800 -1.0 -1.0 hypothetical protein compare
PFLU_RS04325 -1.0 -7.0 ribonuclease G compare
PFLU_RS03075 -1.0 -1.3 translation initiation factor Sui1 compare
PFLU_RS23045 -1.0 -2.2 beta-ketoacyl-ACP synthase II compare
PFLU_RS14805 -1.0 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS27465 -1.0 -2.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS18615 -1.0 -1.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS16390 -1.0 -1.5 DUF411 domain-containing protein compare
PFLU_RS26770 -0.9 -6.2 DedA family protein compare
PFLU_RS31440 -0.9 -1.7 hypothetical protein compare
PFLU_RS24485 -0.9 -4.8 hypothetical protein compare
PFLU_RS26565 -0.9 -1.3 rRNA maturation RNase YbeY compare
PFLU_RS05250 -0.9 -1.8 elongation factor 4 compare
PFLU_RS27630 -0.9 -4.0 dethiobiotin synthase compare
PFLU_RS24205 -0.9 -1.5 DNA binding protein compare
PFLU_RS31710 -0.9 -2.2 hypothetical protein compare
PFLU_RS02115 -0.9 -2.0 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS26145 -0.9 -1.7 hypothetical protein compare
PFLU_RS27645 -0.9 -6.3 8-amino-7-oxononanoate synthase compare
PFLU_RS21240 -0.9 -1.1 hypothetical protein compare
PFLU_RS18665 -0.9 -1.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS09980 -0.9 -6.7 peptidase S41 compare
PFLU_RS02365 -0.9 -5.4 glycosyltransferase compare
PFLU_RS27635 -0.9 -5.1 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS25875 -0.9 -2.5 transcription elongation factor GreA compare
PFLU_RS08660 -0.9 -1.5 heme exporter protein CcmD compare
PFLU_RS12175 -0.9 -1.3 methyl-accepting chemotaxis protein compare
PFLU_RS14430 -0.9 -1.9 arsenate reductase ArsC compare
PFLU_RS19175 -0.8 -3.1 trigger factor compare
PFLU_RS21665 -0.8 -3.5 MinD/ParA family protein compare
PFLU_RS21770 -0.8 -5.4 flagellar motor switch protein FliG compare
PFLU_RS25645 -0.8 -1.6 acetolactate synthase small subunit compare
PFLU_RS04070 -0.8 -1.2 peptide chain release factor 3 compare
PFLU_RS09670 -0.8 -1.9 integrating conjugative element protein compare
PFLU_RS01615 -0.8 -2.3 DUF2164 domain-containing protein compare
PFLU_RS13640 -0.8 -2.1 isochorismatase family protein compare
PFLU_RS05885 -0.8 -2.0 recombinase RecA compare
PFLU_RS31840 -0.8 -1.3 hypothetical protein compare
PFLU_RS17455 -0.8 -3.8 saccharopine dehydrogenase family protein compare
PFLU_RS29400 -0.8 -1.3 DUF1127 domain-containing protein compare
PFLU_RS26175 -0.8 -3.7 NADP-specific glutamate dehydrogenase conserved
PFLU_RS01060 -0.8 -4.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS18755 -0.8 -4.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS01995 -0.8 -5.4 malate dehydrogenase compare
PFLU_RS12135 -0.8 -3.7 hypothetical protein compare
PFLU_RS21965 -0.8 -6.3 transporter compare
PFLU_RS13825 -0.8 -0.9 hypothetical protein compare
PFLU_RS25585 -0.8 -1.0 exodeoxyribonuclease V subunit alpha compare
PFLU_RS19090 -0.8 -3.1 pyridoxal-phosphate dependent enzyme compare
PFLU_RS29340 -0.8 -4.6 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS02690 -0.8 -1.4 hypothetical protein compare
PFLU_RS31425 -0.8 -1.5 hypothetical protein compare
PFLU_RS15610 -0.8 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS21640 -0.8 -3.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS31630 -0.8 -1.3 hypothetical protein compare
PFLU_RS17525 -0.8 -2.0 NUDIX domain-containing protein compare
PFLU_RS13050 -0.7 -2.9 VWA domain-containing protein compare
PFLU_RS07995 -0.7 -3.0 aspartate aminotransferase family protein compare
PFLU_RS13300 -0.7 -1.6 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS18950 -0.7 -3.4 MerR family DNA-binding transcriptional regulator compare
PFLU_RS04315 -0.7 -1.7 rod shape-determining protein MreD compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Alanine in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Alanine across organisms