Experiment set21IT085 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Trehalose dihydrate 5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS13665 +1.6 2.4 MarR family transcriptional regulator compare
PFLU_RS24785 +1.5 11.1 outer membrane protein assembly factor BamB compare
PFLU_RS21425 +1.2 3.9 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS28895 +1.2 2.3 DUF2388 domain-containing protein compare
PFLU_RS03575 +1.2 3.6 hypothetical protein compare
PFLU_RS24255 +1.2 8.8 pyruvate kinase compare
PFLU_RS14050 +1.1 2.3 hypothetical protein compare
PFLU_RS24720 +1.0 6.2 trehalose operon repressor compare
PFLU_RS30660 +1.0 2.4 histidine phosphatase family protein compare
PFLU_RS17920 +1.0 2.3 acyltransferase compare
PFLU_RS22635 +1.0 8.6 kinase/pyrophosphorylase compare
PFLU_RS31840 +0.8 2.0 hypothetical protein compare
PFLU_RS00390 +0.8 4.3 DUF2782 domain-containing protein compare
PFLU_RS13365 +0.8 1.5 hypothetical protein compare
PFLU_RS09500 +0.8 1.2 hypothetical protein compare
PFLU_RS00065 +0.8 4.6 lysophospholipid acyltransferase compare
PFLU_RS00195 +0.8 1.3 dodecin domain-containing protein compare
PFLU_RS31100 +0.8 2.8 preprotein translocase subunit SecG compare
PFLU_RS11380 +0.8 1.3 sarcosine oxidase subunit delta compare
PFLU_RS21795 +0.8 7.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS16310 +0.7 2.1 hypothetical protein compare
PFLU_RS07250 +0.7 5.9 M48 family metallopeptidase compare
PFLU_RS23130 +0.7 4.2 response regulator transcription factor compare
PFLU_RS13370 +0.7 1.2 DUF2790 domain-containing protein compare
PFLU_RS00310 +0.7 1.8 twin transmembrane helix small protein compare
PFLU_RS02515 +0.7 3.7 flagellar motor protein MotB compare
PFLU_RS13065 +0.7 3.8 ser/threonine protein phosphatase compare
PFLU_RS21860 +0.7 4.7 flagellar basal body rod protein FlgF compare
PFLU_RS29555 +0.7 5.5 HDOD domain-containing protein compare
PFLU_RS13120 +0.7 1.1 hypothetical protein compare
PFLU_RS08370 +0.7 2.6 hypothetical protein compare
PFLU_RS02130 +0.7 1.9 glycosyl transferase compare
PFLU_RS01500 +0.7 2.5 cell division protein FtsQ compare
PFLU_RS07520 +0.7 1.2 hypothetical protein compare
PFLU_RS08365 +0.7 5.7 L,D-transpeptidase family protein compare
PFLU_RS00850 +0.7 2.2 hypothetical protein compare
PFLU_RS16445 +0.6 1.7 PIG-L family deacetylase compare
PFLU_RS18055 +0.6 1.6 hydrolase compare
PFLU_RS05965 +0.6 1.4 hypothetical protein compare
PFLU_RS13945 +0.6 1.5 hypothetical protein compare
PFLU_RS15005 +0.6 1.5 hypothetical protein compare
PFLU_RS30390 +0.6 2.3 type III secretion system rspB compare
PFLU_RS02510 +0.6 5.3 flagellar motor stator protein MotA compare
PFLU_RS14550 +0.6 3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS12555 +0.6 3.7 SDR family oxidoreductase compare
PFLU_RS31825 +0.6 3.0 hypothetical protein compare
PFLU_RS18700 +0.6 1.2 hypothetical protein compare
PFLU_RS19730 +0.6 1.7 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS16865 +0.6 2.2 hypothetical protein compare
PFLU_RS31830 +0.6 0.6 hypothetical protein compare
PFLU_RS29310 +0.6 0.9 accessory factor UbiK family protein compare
PFLU_RS28265 +0.6 1.7 malonate decarboxylase subunit delta compare
PFLU_RS12260 +0.6 1.3 hypothetical protein compare
PFLU_RS08485 +0.6 1.3 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS29400 +0.6 1.4 DUF1127 domain-containing protein compare
PFLU_RS17370 +0.6 1.6 hypothetical protein compare
PFLU_RS15795 +0.6 1.2 hypothetical protein compare
PFLU_RS14355 +0.6 1.1 DUF2388 domain-containing protein compare
PFLU_RS24670 +0.6 1.2 HigA family addiction module antidote protein compare
PFLU_RS31780 +0.6 1.6 hypothetical protein compare
PFLU_RS19855 +0.6 1.5 DUF4398 domain-containing protein compare
PFLU_RS10865 +0.6 3.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21950 +0.6 2.0 hypothetical protein compare
PFLU_RS11840 +0.5 1.9 RNA polymerase sigma factor compare
PFLU_RS03100 +0.5 1.0 hypothetical protein compare
PFLU_RS23730 +0.5 4.3 MurR/RpiR family transcriptional regulator compare
PFLU_RS17695 +0.5 2.2 hypothetical protein compare
PFLU_RS31010 +0.5 1.0 transposase compare
PFLU_RS19745 +0.5 1.5 acetylornithine deacetylase compare
PFLU_RS00460 +0.5 4.0 glutamate/aspartate:proton symporter GltP compare
PFLU_RS11505 +0.5 1.2 ABC transporter substrate-binding protein compare
PFLU_RS28325 +0.5 2.9 energy transducer TonB compare
PFLU_RS13020 +0.5 1.7 cobalamin biosynthesis protein compare
PFLU_RS20025 +0.5 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24130 +0.5 2.0 protein SlyX compare
PFLU_RS24300 +0.5 2.2 hypothetical protein compare
PFLU_RS23175 +0.5 3.2 flagellar basal body rod protein FlgC compare
PFLU_RS03930 +0.5 1.8 DNA gyrase inhibitor YacG compare
PFLU_RS21845 +0.5 3.6 flagellar basal body P-ring protein FlgI compare
PFLU_RS05040 +0.5 2.0 DUF1120 domain-containing protein compare
PFLU_RS25920 +0.5 1.5 outer membrane protein assembly factor BamE compare
PFLU_RS29890 +0.5 3.3 transcriptional regulator HexR compare
PFLU_RS18275 +0.5 2.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS05585 +0.5 1.6 MtnX-like HAD-IB family phosphatase compare
PFLU_RS18715 +0.5 2.5 MFS transporter compare
PFLU_RS20335 +0.5 1.3 hypothetical protein compare
PFLU_RS27910 +0.5 0.7 helix-turn-helix transcriptional regulator compare
PFLU_RS15025 +0.5 2.2 2-keto-4-pentenoate hydratase compare
PFLU_RS23195 +0.5 4.2 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS16390 +0.5 1.1 DUF411 domain-containing protein compare
PFLU_RS15565 +0.5 1.9 SDR family oxidoreductase compare
PFLU_RS13205 +0.5 1.6 DUF883 family protein compare
PFLU_RS30865 +0.5 1.7 transposase compare
PFLU_RS19440 +0.5 2.9 alpha/beta fold hydrolase compare
PFLU_RS11930 +0.5 1.4 biopolymer transporter ExbD compare
PFLU_RS22250 +0.5 1.3 hypothetical protein compare
PFLU_RS08375 +0.5 3.9 N-acetyltransferase compare
PFLU_RS29745 +0.5 1.4 response regulator compare
PFLU_RS12745 +0.5 2.0 RNA polymerase sigma factor compare
PFLU_RS05780 +0.5 3.3 helix-turn-helix transcriptional regulator compare
PFLU_RS01005 +0.5 1.0 ABC transporter ATP-binding protein compare
PFLU_RS31800 +0.5 1.1 hypothetical protein compare
PFLU_RS09075 +0.5 2.0 hotdog fold thioesterase compare
PFLU_RS05340 +0.5 1.2 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS17685 +0.5 2.1 GNAT family N-acetyltransferase compare
PFLU_RS17570 +0.4 2.0 DNA polymerase Y family protein compare
PFLU_RS12170 +0.4 2.2 transcriptional regulator compare
PFLU_RS29975 +0.4 1.0 ATP-binding cassette domain-containing protein compare
PFLU_RS04165 +0.4 2.4 cell division protein ZapE compare
PFLU_RS29810 +0.4 3.1 LysR family transcriptional regulator compare
PFLU_RS05315 +0.4 1.8 GntR family transcriptional regulator compare
PFLU_RS19905 +0.4 2.2 general secretion pathway protein GspL compare
PFLU_RS14130 +0.4 1.8 hypothetical protein compare
PFLU_RS17425 +0.4 2.0 ABC transporter ATP-binding protein compare
PFLU_RS05500 +0.4 1.7 HigA family addiction module antidote protein compare
PFLU_RS30500 +0.4 1.8 LapA family protein compare
PFLU_RS07935 +0.4 1.8 type 1 fimbrial protein compare
PFLU_RS14420 +0.4 1.6 chemotactic transduction protein ChpE compare
PFLU_RS01475 +0.4 3.9 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS07790 +0.4 1.7 PilZ domain-containing protein compare
PFLU_RS21835 +0.4 3.9 flagellar hook-associated protein FlgK compare
PFLU_RS11835 +0.4 2.2 hypothetical protein compare
PFLU_RS03025 +0.4 2.6 tRNA dihydrouridine synthase DusB compare
PFLU_RS08760 +0.4 1.5 phosphonate C-P lyase system protein PhnG compare
PFLU_RS01490 +0.4 3.9 cellulose biosynthesis protein BcsC compare
PFLU_RS08850 +0.4 2.2 pyruvate kinase compare
PFLU_RS01910 +0.4 0.7 sterol-binding protein compare
PFLU_RS18600 +0.4 1.8 GNAT family N-acetyltransferase compare
PFLU_RS18420 +0.4 0.8 hypothetical protein compare
PFLU_RS06570 +0.4 1.3 glycine zipper 2TM domain-containing protein compare
PFLU_RS08385 +0.4 1.9 PilZ domain-containing protein compare
PFLU_RS23325 +0.4 3.0 GlxA family transcriptional regulator compare
PFLU_RS24140 +0.4 3.7 OprD family porin compare
PFLU_RS15035 +0.4 2.0 amino acid synthesis family protein compare
PFLU_RS02580 +0.4 2.7 FtsH protease activity modulator HflK compare
PFLU_RS21815 +0.4 1.8 flagellar protein FlaG compare
PFLU_RS23590 +0.4 1.2 gluconokinase compare
PFLU_RS17510 +0.4 2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS14990 +0.4 1.4 helix-turn-helix transcriptional regulator compare
PFLU_RS01670 +0.4 2.5 protein-export chaperone SecB compare
PFLU_RS21600 +0.4 1.3 response regulator transcription factor compare
PFLU_RS07640 +0.4 2.9 universal stress protein compare
PFLU_RS23180 +0.4 2.8 flagellar basal body rod protein FlgB compare
PFLU_RS30470 +0.4 1.2 addiction module antidote protein compare
PFLU_RS31305 +0.4 1.6 cell wall hydrolase compare
PFLU_RS11225 +0.4 1.6 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
PFLU_RS31415 +0.4 1.7 hypothetical protein compare
PFLU_RS14290 +0.4 1.5 response regulator compare
PFLU_RS01480 +0.4 3.5 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
PFLU_RS08545 +0.4 1.6 GAF domain-containing protein compare
PFLU_RS20625 +0.4 1.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS19900 +0.4 1.2 general secretion pathway protein GspM compare
PFLU_RS14155 +0.4 1.6 hypothetical protein compare
PFLU_RS30770 +0.4 1.1 thioredoxin family protein compare
PFLU_RS19050 +0.4 1.3 spore coat protein U domain-containing protein compare
PFLU_RS12615 +0.4 1.2 oxidoreductase compare
PFLU_RS19475 +0.4 1.3 Zn-dependent hydrolase compare
PFLU_RS05105 +0.4 1.7 tetratricopeptide repeat protein compare
PFLU_RS31310 +0.4 0.6 phage tail protein compare
PFLU_RS23810 +0.4 1.3 hypothetical protein compare
PFLU_RS17675 +0.4 1.4 hypothetical protein compare
PFLU_RS06880 +0.4 2.7 hypothetical protein compare
PFLU_RS21570 +0.4 1.2 exonuclease compare
PFLU_RS19450 +0.4 2.4 ABC transporter substrate-binding protein compare
PFLU_RS15590 +0.4 1.9 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
PFLU_RS15310 +0.4 0.8 YgdI/YgdR family lipoprotein compare
PFLU_RS19995 +0.4 1.5 Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB compare
PFLU_RS19165 +0.4 1.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS27840 +0.4 1.3 hypothetical protein compare
PFLU_RS22770 +0.4 1.5 DUF2784 domain-containing protein compare
PFLU_RS05520 +0.4 2.7 GGDEF and EAL domain-containing protein compare
PFLU_RS20045 +0.4 1.3 hypothetical protein compare
PFLU_RS17390 +0.4 1.0 DUF4880 domain-containing protein compare
PFLU_RS26170 +0.4 1.7 elongation factor GreAB compare
PFLU_RS00890 +0.4 1.8 hypothetical protein compare
PFLU_RS30590 +0.4 0.6 hypothetical protein compare
PFLU_RS21660 +0.4 3.0 RNA polymerase sigma factor FliA compare
PFLU_RS19305 +0.4 2.3 TRAP transporter large permease compare
PFLU_RS21855 +0.4 2.8 flagellar basal-body rod protein FlgG compare
PFLU_RS24790 +0.4 1.4 tetratricopeptide repeat protein compare
PFLU_RS28990 +0.4 2.9 flagellar basal body-associated protein FliL compare
PFLU_RS16455 +0.4 1.9 glycosyltransferase compare
PFLU_RS21850 +0.3 2.9 flagellar basal body L-ring protein FlgH compare
PFLU_RS26930 +0.3 1.4 DUF2796 domain-containing protein compare
PFLU_RS30460 +0.3 1.8 L-aspartate oxidase compare
PFLU_RS07755 +0.3 2.0 heavy metal sensor histidine kinase compare
PFLU_RS31620 +0.3 1.3 integrase compare
PFLU_RS16055 +0.3 0.8 GntR family transcriptional regulator compare
PFLU_RS07030 +0.3 1.8 methylated-DNA--[protein]-cysteine S-methyltransferase compare
PFLU_RS08100 +0.3 1.6 histidinol-phosphate transaminase compare
PFLU_RS19930 +0.3 1.6 type II secretion system protein GspG compare
PFLU_RS01660 +0.3 1.0 rhodanese-like domain-containing protein compare
PFLU_RS12520 +0.3 1.7 carboxymuconolactone decarboxylase family protein compare
PFLU_RS24650 +0.3 2.5 SIS domain-containing protein compare
PFLU_RS14195 +0.3 0.9 hypothetical protein compare
PFLU_RS21930 +0.3 1.8 DUF454 domain-containing protein compare
PFLU_RS10055 +0.3 1.8 hypothetical protein compare
PFLU_RS20260 +0.3 1.2 terminase compare
PFLU_RS27580 +0.3 1.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS26505 +0.3 1.2 DUF2788 domain-containing protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source D-Trehalose dihydrate across organisms