Experiment set21IT080 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Quinic Acid 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS06765 -5.5 -3.8 4-carboxymuconolactone decarboxylase compare
PFLU_RS28695 -5.1 -6.1 phosphoglycerate dehydrogenase compare
PFLU_RS28535 -4.8 -11.1 dihydroxy-acid dehydratase compare
PFLU_RS28390 -4.6 -8.7 methionine biosynthesis protein MetW compare
PFLU_RS02490 -4.5 -11.7 phosphoserine phosphatase SerB compare
PFLU_RS25640 -4.5 -8.7 ketol-acid reductoisomerase compare
PFLU_RS27365 -4.5 -9.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20565 -4.4 -10.3 3-isopropylmalate dehydrogenase compare
PFLU_RS25360 -4.4 -6.0 glutamate 5-kinase compare
PFLU_RS27370 -4.3 -10.8 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.2 -12.9 homoserine O-acetyltransferase compare
PFLU_RS06760 -4.2 -11.1 3-oxoadipate enol-lactonase compare
PFLU_RS04470 -4.2 -8.9 histidinol dehydrogenase compare
PFLU_RS20580 -4.1 -11.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS02590 -4.1 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS06730 -4.1 -11.7 CoA-transferase subunit beta compare
PFLU_RS24765 -4.1 -19.2 2-isopropylmalate synthase compare
PFLU_RS06735 -4.1 -7.7 3-oxoadipyl-CoA thiolase compare
PFLU_RS20575 -4.0 -6.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01610 -4.0 -8.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS06740 -4.0 -10.2 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS20510 -3.9 -12.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01605 -3.9 -6.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS06755 -3.9 -9.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS01620 -3.9 -7.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS10765 -3.7 -18.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS20540 -3.7 -9.5 phosphoribosylanthranilate isomerase compare
PFLU_RS02045 -3.7 -24.2 glutamate synthase large subunit compare
PFLU_RS18410 -3.6 -7.1 response regulator compare
PFLU_RS02050 -3.6 -17.7 NAD(P)-binding protein compare
PFLU_RS00180 -3.6 -6.4 tryptophan synthase subunit beta compare
PFLU_RS28165 -3.5 -10.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS06725 -3.4 -9.5 CoA transferase subunit A compare
PFLU_RS06715 -3.4 -11.2 IclR family transcriptional regulator compare
PFLU_RS29515 -3.4 -12.5 RidA family protein compare
PFLU_RS25645 -3.4 -2.3 acetolactate synthase small subunit compare
PFLU_RS00175 -3.4 -5.1 tryptophan synthase subunit alpha compare
PFLU_RS12980 -3.4 -8.0 nitrite/sulfite reductase compare
PFLU_RS04465 -3.3 -10.0 ATP phosphoribosyltransferase compare
PFLU_RS12975 -3.2 -3.8 DUF934 domain-containing protein compare
PFLU_RS01895 -3.2 -7.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28655 -3.2 -12.2 HAD family hydrolase compare
PFLU_RS01900 -3.2 -7.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS29095 -3.1 -23.6 polyphosphate kinase 1 compare
PFLU_RS18505 -3.0 -7.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20515 -3.0 -4.6 amidophosphoribosyltransferase compare
PFLU_RS25940 -2.9 -24.1 FCD domain-containing protein compare
PFLU_RS01625 -2.9 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27640 -2.8 -2.6 alpha/beta fold hydrolase compare
PFLU_RS06055 -2.8 -2.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS23310 -2.7 -8.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS06745 -2.6 -6.0 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS27475 -2.6 -3.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS23305 -2.6 -9.8 arginine N-succinyltransferase compare
PFLU_RS15410 -2.5 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS03970 -2.4 -10.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS19015 -2.4 -13.2 anti-sigma factor compare
PFLU_RS22070 -2.4 -4.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08165 -2.3 -3.0 acyl carrier protein compare
PFLU_RS24025 -2.3 -11.3 quinolinate synthase NadA compare
PFLU_RS26375 -2.2 -15.1 MFS transporter conserved
PFLU_RS23065 -2.2 -10.1 phosphate acyltransferase PlsX compare
PFLU_RS26360 -2.1 -7.7 shikimate dehydrogenase conserved
PFLU_RS28645 -2.1 -13.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22600 -2.1 -2.8 RNA polymerase sigma factor SigX compare
PFLU_RS09055 -2.1 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS29560 -2.1 -2.5 hypothetical protein compare
PFLU_RS22095 -2.0 -12.6 GTP diphosphokinase compare
PFLU_RS13540 -2.0 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS01320 -2.0 -8.7 phosphoenolpyruvate carboxykinase compare
PFLU_RS26355 -2.0 -6.9 type II 3-dehydroquinate dehydratase conserved
PFLU_RS00415 -1.9 -1.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS07665 -1.9 -1.8 type I DNA topoisomerase compare
PFLU_RS22105 -1.9 -3.9 cysteine synthase CysM compare
PFLU_RS28965 -1.9 -8.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS25735 -1.9 -5.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS26370 -1.8 -11.8 TIM barrel protein conserved
PFLU_RS02365 -1.8 -8.8 glycosyltransferase compare
PFLU_RS06750 -1.8 -11.3 MFS transporter compare
PFLU_RS22740 -1.8 -3.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS13035 -1.7 -3.2 cobalamin biosynthesis protein CobW compare
PFLU_RS07695 -1.7 -3.8 beta-N-acetylhexosaminidase compare
PFLU_RS08650 -1.7 -1.9 heme exporter protein CcmB compare
PFLU_RS08660 -1.7 -2.2 heme exporter protein CcmD compare
PFLU_RS27380 -1.6 -8.8 anthranilate synthase component I compare
PFLU_RS25755 -1.6 -1.5 pantoate--beta-alanine ligase compare
PFLU_RS08655 -1.6 -2.9 heme ABC transporter permease compare
PFLU_RS03770 -1.6 -9.9 sulfate adenylyltransferase subunit CysN compare
PFLU_RS25750 -1.6 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS31630 -1.5 -3.0 hypothetical protein compare
PFLU_RS07225 -1.5 -10.7 L-aspartate oxidase compare
PFLU_RS20290 -1.5 -2.2 integration host factor subunit alpha compare
PFLU_RS26290 -1.5 -1.4 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS08160 -1.5 -5.4 sugar transferase compare
PFLU_RS29400 -1.5 -2.1 DUF1127 domain-containing protein compare
PFLU_RS00870 -1.4 -1.2 hypothetical protein compare
PFLU_RS08410 -1.4 -6.6 HTH-type transcriptional regulator CysB compare
PFLU_RS25760 -1.4 -4.2 glucose-6-phosphate isomerase compare
PFLU_RS02355 -1.4 -4.6 GNAT family N-acetyltransferase compare
PFLU_RS04140 -1.4 -2.0 response regulator transcription factor compare
PFLU_RS13085 -1.4 -3.3 DUF1315 family protein compare
PFLU_RS02205 -1.4 -6.8 potassium/proton antiporter compare
PFLU_RS14810 -1.3 -1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS02370 -1.3 -6.0 glycosyltransferase compare
PFLU_RS13975 -1.3 -2.7 hypothetical protein compare
PFLU_RS18640 -1.3 -2.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS30525 -1.3 -7.4 SDR family oxidoreductase compare
PFLU_RS03765 -1.3 -7.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS08185 -1.3 -6.8 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS24205 -1.3 -1.8 DNA binding protein compare
PFLU_RS06320 -1.3 -2.2 OmpH family outer membrane protein compare
PFLU_RS23070 -1.3 -1.3 50S ribosomal protein L32 compare
PFLU_RS20660 -1.2 -7.9 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS24095 -1.2 -1.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS26595 -1.2 -2.1 lipoprotein compare
PFLU_RS01995 -1.2 -7.7 malate dehydrogenase compare
PFLU_RS02565 -1.2 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS04015 -1.2 -1.8 1-phosphofructokinase compare
PFLU_RS05630 -1.2 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS05750 -1.2 -2.2 methionine--tRNA ligase compare
PFLU_RS01615 -1.2 -2.7 DUF2164 domain-containing protein compare
PFLU_RS07275 -1.2 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS05655 -1.2 -3.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS27375 -1.2 -3.4 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS31185 -1.2 -3.5 hypothetical protein compare
PFLU_RS26735 -1.2 -5.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS18395 -1.2 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS25585 -1.2 -0.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS21740 -1.2 -4.6 Hpt domain-containing protein compare
PFLU_RS02625 -1.1 -7.2 ribonuclease R compare
PFLU_RS25715 -1.1 -5.7 RNA polymerase-binding protein DksA compare
PFLU_RS29875 -1.1 -8.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS11320 -1.1 -8.3 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS08670 -1.1 -4.0 heme lyase CcmF/NrfE family subunit compare
PFLU_RS26535 -1.1 -4.6 thiamine phosphate synthase compare
PFLU_RS23185 -1.1 -7.6 protein-glutamate O-methyltransferase CheR compare
PFLU_RS22835 -1.1 -5.7 amidotransferase compare
PFLU_RS17265 -1.1 -1.8 hypothetical protein compare
PFLU_RS07725 -1.1 -2.2 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS04945 -1.1 -2.4 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS27445 -1.1 -8.1 phosphotransferase compare
PFLU_RS30165 -1.1 -4.7 ParA family protein compare
PFLU_RS30170 -1.1 -3.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS18670 -1.0 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS19170 -1.0 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS08180 -1.0 -3.5 ketoacyl-ACP synthase III compare
PFLU_RS25740 -1.0 -3.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS11525 -1.0 -2.9 GntR family transcriptional regulator compare
PFLU_RS25800 -1.0 -4.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS09305 -1.0 -7.6 hypothetical protein compare
PFLU_RS21645 -1.0 -5.4 chemotaxis protein CheA compare
PFLU_RS03665 -1.0 -3.8 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS01585 -1.0 -4.4 oxidative damage protection protein compare
PFLU_RS29880 -1.0 -6.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS14715 -1.0 -7.0 protein-glutamate O-methyltransferase CheR compare
PFLU_RS24125 -1.0 -1.3 cold-shock protein compare
PFLU_RS13105 -1.0 -2.1 nuclear transport factor 2 family protein compare
PFLU_RS21315 -1.0 -3.8 GTP cyclohydrolase I FolE compare
PFLU_RS23045 -1.0 -1.9 beta-ketoacyl-ACP synthase II compare
PFLU_RS10835 -1.0 -2.2 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS26660 -1.0 -2.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS07520 -1.0 -1.1 hypothetical protein compare
PFLU_RS25120 -1.0 -2.3 response regulator compare
PFLU_RS02790 -1.0 -1.0 TetR family transcriptional regulator compare
PFLU_RS11850 -1.0 -1.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS30530 -1.0 -4.3 acetyltransferase compare
PFLU_RS22520 -1.0 -1.9 GntR family transcriptional regulator compare
PFLU_RS12660 -1.0 -3.9 hypothetical protein compare
PFLU_RS27440 -1.0 -4.5 nucleotidyltransferase family protein compare
PFLU_RS04165 -1.0 -3.5 cell division protein ZapE compare
PFLU_RS25730 -1.0 -6.7 PAS domain S-box protein compare
PFLU_RS08350 -0.9 -2.1 ABC transporter ATP-binding protein compare
PFLU_RS25595 -0.9 -1.1 exodeoxyribonuclease V subunit gamma compare
PFLU_RS28690 -0.9 -6.7 FAD-binding oxidoreductase compare
PFLU_RS24590 -0.9 -2.6 cytochrome c assembly protein compare
PFLU_RS15205 -0.9 -2.2 ribose ABC transporter permease compare
PFLU_RS18740 -0.9 -2.8 Dyp-type peroxidase compare
PFLU_RS21060 -0.9 -2.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS06855 -0.9 -1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS12260 -0.9 -1.3 hypothetical protein compare
PFLU_RS13045 -0.9 -3.1 AAA domain-containing protein compare
PFLU_RS10555 -0.9 -2.8 PhzF family phenazine biosynthesis protein compare
PFLU_RS31425 -0.9 -1.8 hypothetical protein compare
PFLU_RS25925 -0.9 -1.5 RnfH family protein compare
PFLU_RS19935 -0.9 -1.0 type II secretion system protein GspF compare
PFLU_RS01685 -0.9 -2.3 nitrogen regulation protein NR(I) compare
PFLU_RS24475 -0.9 -7.9 AmpG family muropeptide MFS transporter compare
PFLU_RS08505 -0.9 -4.2 protease HtpX compare
PFLU_RS30900 -0.9 -1.3 hypothetical protein compare
PFLU_RS13050 -0.9 -3.3 VWA domain-containing protein compare
PFLU_RS27305 -0.9 -5.4 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS22735 -0.9 -4.9 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS29490 -0.9 -3.8 ribonuclease PH compare
PFLU_RS25210 -0.9 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS13920 -0.9 -4.4 recombination protein NinG compare
PFLU_RS00310 -0.9 -1.0 twin transmembrane helix small protein compare
PFLU_RS23380 -0.9 -1.6 HAD-IB family hydrolase compare
PFLU_RS28665 -0.9 -6.5 threonine ammonia-lyase, biosynthetic compare
PFLU_RS05885 -0.9 -2.0 recombinase RecA compare
PFLU_RS20520 -0.9 -5.0 colicin V production protein CvpA compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Quinic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Quinic Acid across organisms