Experiment set21IT077 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glycerol 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27365 -5.0 -8.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20575 -4.8 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02490 -4.5 -14.2 phosphoserine phosphatase SerB compare
PFLU_RS28535 -4.3 -16.3 dihydroxy-acid dehydratase compare
PFLU_RS25640 -4.2 -13.2 ketol-acid reductoisomerase compare
PFLU_RS20565 -4.2 -14.8 3-isopropylmalate dehydrogenase compare
PFLU_RS28385 -4.2 -15.1 homoserine O-acetyltransferase compare
PFLU_RS27370 -4.1 -13.4 anthranilate phosphoribosyltransferase compare
PFLU_RS04470 -4.1 -11.5 histidinol dehydrogenase compare
PFLU_RS04465 -4.1 -10.5 ATP phosphoribosyltransferase compare
PFLU_RS01605 -4.1 -7.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20580 -4.0 -12.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS12980 -4.0 -7.7 nitrite/sulfite reductase compare
PFLU_RS01900 -4.0 -6.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS00180 -4.0 -5.5 tryptophan synthase subunit beta compare
PFLU_RS24765 -4.0 -22.0 2-isopropylmalate synthase compare
PFLU_RS20540 -3.9 -10.1 phosphoribosylanthranilate isomerase compare
PFLU_RS29095 -3.9 -27.8 polyphosphate kinase 1 compare
PFLU_RS01610 -3.9 -12.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28390 -3.9 -12.0 methionine biosynthesis protein MetW compare
PFLU_RS22070 -3.9 -3.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08065 -3.8 -9.6 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS05660 -3.8 -11.4 glycerol kinase GlpK compare
PFLU_RS01620 -3.8 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01625 -3.7 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS20510 -3.7 -15.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28165 -3.6 -11.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS02590 -3.6 -10.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS06055 -3.6 -3.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS28695 -3.6 -10.3 phosphoglycerate dehydrogenase compare
PFLU_RS22835 -3.6 -9.4 amidotransferase compare
PFLU_RS27440 -3.5 -8.8 nucleotidyltransferase family protein compare
PFLU_RS00175 -3.5 -6.3 tryptophan synthase subunit alpha compare
PFLU_RS28655 -3.5 -13.0 HAD family hydrolase compare
PFLU_RS25360 -3.3 -9.4 glutamate 5-kinase compare
PFLU_RS20515 -3.2 -5.6 amidophosphoribosyltransferase compare
PFLU_RS25940 -3.2 -27.1 FCD domain-containing protein compare
PFLU_RS18505 -3.1 -10.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24025 -3.1 -13.5 quinolinate synthase NadA compare
PFLU_RS03970 -3.0 -12.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS05665 -3.0 -7.6 aquaporin conserved
PFLU_RS02275 -2.9 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS29875 -2.9 -18.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01895 -2.9 -8.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS12975 -2.8 -6.0 DUF934 domain-containing protein compare
PFLU_RS24255 -2.8 -9.5 pyruvate kinase compare
PFLU_RS29880 -2.8 -16.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS27475 -2.7 -4.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS22740 -2.7 -3.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS25750 -2.6 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS10765 -2.6 -14.2 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS25735 -2.6 -4.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23310 -2.6 -9.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS25645 -2.5 -3.0 acetolactate synthase small subunit compare
PFLU_RS03765 -2.5 -12.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS29885 -2.5 -12.4 LysR family transcriptional regulator compare
PFLU_RS24335 -2.5 -15.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS30345 -2.5 -4.6 DUF2559 family protein compare
PFLU_RS13540 -2.3 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS10325 -2.2 -10.7 MFS transporter compare
PFLU_RS23305 -2.2 -10.6 arginine N-succinyltransferase compare
PFLU_RS04220 -2.2 -9.2 FadR family transcriptional regulator compare
PFLU_RS18940 -2.1 -10.2 acyl-CoA dehydrogenase compare
PFLU_RS07225 -2.1 -14.8 L-aspartate oxidase compare
PFLU_RS00415 -2.1 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS19015 -2.1 -13.2 anti-sigma factor compare
PFLU_RS03770 -2.1 -12.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS22455 -2.0 -9.5 hypothetical protein compare
PFLU_RS08665 -2.0 -4.7 cytochrome c maturation protein CcmE compare
PFLU_RS29290 -2.0 -4.2 hypothetical protein compare
PFLU_RS25760 -2.0 -2.7 glucose-6-phosphate isomerase compare
PFLU_RS28645 -2.0 -13.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS19170 -2.0 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS03555 -1.9 -1.5 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS08670 -1.9 -6.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS24330 -1.9 -4.3 phosphogluconate dehydratase compare
PFLU_RS29505 -1.9 -5.3 DNA-directed RNA polymerase subunit omega compare
PFLU_RS20660 -1.9 -11.3 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS18410 -1.9 -4.7 response regulator compare
PFLU_RS25755 -1.9 -2.2 pantoate--beta-alanine ligase compare
PFLU_RS27650 -1.9 -12.5 biotin synthase BioB compare
PFLU_RS23725 -1.9 -6.4 glucose-6-phosphate dehydrogenase compare
PFLU_RS27445 -1.8 -14.4 phosphotransferase compare
PFLU_RS05965 -1.8 -1.9 hypothetical protein compare
PFLU_RS28665 -1.8 -12.0 threonine ammonia-lyase, biosynthetic compare
PFLU_RS21665 -1.8 -6.4 MinD/ParA family protein compare
PFLU_RS23920 -1.7 -1.9 septation protein A compare
PFLU_RS18755 -1.7 -8.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS18675 -1.7 -2.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS26545 -1.7 -8.8 sel1 repeat family protein compare
PFLU_RS01875 -1.7 -1.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS07695 -1.6 -4.7 beta-N-acetylhexosaminidase compare
PFLU_RS25715 -1.6 -7.8 RNA polymerase-binding protein DksA compare
PFLU_RS22645 -1.6 -11.9 EamA family transporter compare
PFLU_RS18670 -1.6 -2.0 NADH-quinone oxidoreductase subunit M compare
PFLU_RS29515 -1.6 -9.6 RidA family protein compare
PFLU_RS02365 -1.5 -8.7 glycosyltransferase compare
PFLU_RS31425 -1.5 -2.3 hypothetical protein compare
PFLU_RS26290 -1.5 -1.5 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS21300 -1.5 -4.5 cysteine hydrolase compare
PFLU_RS19165 -1.5 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS22105 -1.5 -4.1 cysteine synthase CysM compare
PFLU_RS30505 -1.5 -4.7 hypothetical protein compare
PFLU_RS28965 -1.4 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29890 -1.4 -7.3 transcriptional regulator HexR compare
PFLU_RS18530 -1.4 -3.7 DNA translocase FtsK compare
PFLU_RS19550 -1.4 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS30165 -1.4 -6.0 ParA family protein compare
PFLU_RS05750 -1.4 -2.1 methionine--tRNA ligase compare
PFLU_RS08650 -1.4 -2.0 heme exporter protein CcmB compare
PFLU_RS08160 -1.4 -5.5 sugar transferase compare
PFLU_RS13035 -1.3 -3.2 cobalamin biosynthesis protein CobW compare
PFLU_RS26735 -1.3 -6.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS01765 -1.3 -7.2 histidine utilization repressor compare
PFLU_RS27630 -1.3 -5.6 dethiobiotin synthase compare
PFLU_RS25730 -1.3 -9.2 PAS domain S-box protein compare
PFLU_RS27645 -1.3 -9.4 8-amino-7-oxononanoate synthase compare
PFLU_RS22520 -1.3 -2.8 GntR family transcriptional regulator compare
PFLU_RS24090 -1.2 -2.1 Holliday junction branch migration protein RuvA compare
PFLU_RS21240 -1.2 -1.6 hypothetical protein compare
PFLU_RS08165 -1.2 -2.1 acyl carrier protein compare
PFLU_RS27380 -1.2 -7.1 anthranilate synthase component I compare
PFLU_RS27635 -1.2 -6.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS28690 -1.2 -8.1 FAD-binding oxidoreductase compare
PFLU_RS24125 -1.2 -1.5 cold-shock protein compare
PFLU_RS01910 -1.2 -1.5 sterol-binding protein compare
PFLU_RS01390 -1.2 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS21740 -1.1 -5.1 Hpt domain-containing protein compare
PFLU_RS02115 -1.1 -2.0 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS03665 -1.1 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS22735 -1.1 -6.9 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS01645 -1.1 -6.1 S41 family peptidase compare
PFLU_RS28195 -1.1 -8.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS22725 -1.1 -2.5 transcriptional regulator compare
PFLU_RS08505 -1.1 -5.6 protease HtpX compare
PFLU_RS25790 -1.1 -3.6 polyribonucleotide nucleotidyltransferase compare
PFLU_RS15065 -1.1 -3.9 IclR family transcriptional regulator compare
PFLU_RS04385 -1.1 -6.5 RNase adapter RapZ compare
PFLU_RS18615 -1.1 -1.8 NADH-quinone oxidoreductase subunit A compare
PFLU_RS04315 -1.0 -3.4 rod shape-determining protein MreD compare
PFLU_RS02980 -1.0 -1.9 precorrin-8X methylmutase compare
PFLU_RS24095 -1.0 -1.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS25225 -1.0 -4.9 disulfide bond formation protein B compare
PFLU_RS04715 -1.0 -3.6 D-alanine--D-alanine ligase compare
PFLU_RS04930 -1.0 -6.7 PhoH family protein compare
PFLU_RS08675 -1.0 -2.3 DsbE family thiol:disulfide interchange protein compare
PFLU_RS29750 -1.0 -4.0 phosphate signaling complex protein PhoU compare
PFLU_RS08125 -1.0 -2.4 integration host factor subunit beta compare
PFLU_RS27265 -1.0 -2.6 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS20870 -1.0 -2.6 hypothetical protein compare
PFLU_RS25585 -1.0 -1.1 exodeoxyribonuclease V subunit alpha compare
PFLU_RS09305 -1.0 -7.2 hypothetical protein compare
PFLU_RS24805 -1.0 -3.3 helix-turn-helix domain-containing protein compare
PFLU_RS02165 -1.0 -3.8 beta-ketoacyl synthase chain length factor compare
PFLU_RS30030 -1.0 -1.0 membrane protein compare
PFLU_RS22195 -1.0 -2.7 DEAD/DEAH box helicase compare
PFLU_RS30525 -1.0 -6.1 SDR family oxidoreductase compare
PFLU_RS26565 -1.0 -1.0 rRNA maturation RNase YbeY compare
PFLU_RS26635 -1.0 -4.8 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS02670 -1.0 -2.5 hypothetical protein compare
PFLU_RS02565 -1.0 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS24860 -1.0 -2.3 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS23240 -0.9 -4.5 magnesium transporter compare
PFLU_RS18620 -0.9 -3.1 NADH-quinone oxidoreductase subunit B compare
PFLU_RS08655 -0.9 -2.3 heme ABC transporter permease compare
PFLU_RS12375 -0.9 -4.0 hypothetical protein compare
PFLU_RS25740 -0.9 -3.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS06735 -0.9 -4.4 3-oxoadipyl-CoA thiolase compare
PFLU_RS02370 -0.9 -5.0 glycosyltransferase compare
PFLU_RS04565 -0.9 -0.9 TMEM165/GDT1 family protein compare
PFLU_RS27375 -0.9 -3.3 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS05960 -0.9 -3.2 NADH:flavin oxidoreductase/NADH oxidase compare
PFLU_RS07665 -0.9 -1.6 type I DNA topoisomerase compare
PFLU_RS27640 -0.9 -2.0 alpha/beta fold hydrolase compare
PFLU_RS24015 -0.9 -2.2 cold-shock protein compare
PFLU_RS18000 -0.9 -1.7 AhpC/TSA family protein compare
PFLU_RS14300 -0.9 -1.3 response regulator transcription factor compare
PFLU_RS31710 -0.9 -2.0 hypothetical protein compare
PFLU_RS08660 -0.9 -1.6 heme exporter protein CcmD compare
PFLU_RS27305 -0.9 -5.2 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS28470 -0.9 -2.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS00155 -0.9 -4.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS25190 -0.9 -2.2 hypothetical protein compare
PFLU_RS29755 -0.9 -6.0 phosphate ABC transporter ATP-binding protein compare
PFLU_RS05210 -0.9 -1.5 HU family DNA-binding protein compare
PFLU_RS24590 -0.9 -2.1 cytochrome c assembly protein compare
PFLU_RS08380 -0.9 -5.7 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS07725 -0.9 -2.3 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS22635 -0.9 -6.9 kinase/pyrophosphorylase compare
PFLU_RS20405 -0.8 -3.1 carbon storage regulator CsrA compare
PFLU_RS18725 -0.8 -1.4 alpha/beta hydrolase compare
PFLU_RS18625 -0.8 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS23185 -0.8 -6.6 protein-glutamate O-methyltransferase CheR compare
PFLU_RS12635 -0.8 -2.1 conjugal transfer protein TraR compare
PFLU_RS31010 -0.8 -1.2 transposase compare
PFLU_RS09980 -0.8 -6.5 peptidase S41 compare
PFLU_RS09575 -0.8 -2.8 FadR family transcriptional regulator compare
PFLU_RS24160 -0.8 -3.7 HAMP domain-containing protein compare
PFLU_RS21670 -0.8 -5.7 flagellar biosynthesis protein FlhF compare
PFLU_RS11475 -0.8 -1.1 histidine kinase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens SBW25-INTG

For carbon source Glycerol across organisms