Experiment set21IT034 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.9 -3.7 phosphoglycerate kinase compare
BPHYT_RS24095 -6.1 -3.9 membrane protein compare
BPHYT_RS16835 -5.1 -6.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17945 -4.3 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS17625 -4.3 -15.7 cytochrome B compare
BPHYT_RS17620 -4.0 -8.6 cytochrome C compare
BPHYT_RS16710 -3.8 -1.0 LysR family transcriptional regulator compare
BPHYT_RS02590 -3.8 -6.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS04965 -3.7 -9.0 ATP-binding protein compare
BPHYT_RS08960 -3.7 -1.7 threonine synthase compare
BPHYT_RS17630 -3.6 -6.3 ubiquinol-cytochrome C reductase compare
BPHYT_RS07325 -3.6 -0.9 GntR family transcriptional regulator compare
BPHYT_RS14190 -3.5 -7.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12845 -3.4 -17.3 ATPase compare
BPHYT_RS17095 -3.3 -2.9 proline--tRNA ligase compare
BPHYT_RS17955 -3.3 -5.0 cytochrome C compare
BPHYT_RS31910 -3.3 -1.7 hypothetical protein compare
BPHYT_RS07595 -3.3 -1.7 membrane protein compare
BPHYT_RS26840 -3.2 -6.8 NADH dehydrogenase compare
BPHYT_RS04290 -3.1 -1.6 glycosyl transferase family 2 compare
BPHYT_RS06405 -3.1 -5.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS33580 -3.0 -5.3 geranyltranstransferase compare
BPHYT_RS36385 -3.0 -1.1 TetR family transcriptional regulator compare
BPHYT_RS16340 -3.0 -4.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS27175 -2.9 -1.1 DNA-binding protein compare
BPHYT_RS12055 -2.9 -15.7 phosphoenolpyruvate synthase compare
BPHYT_RS22295 -2.8 -1.3 LysR family transcriptional regulator compare
BPHYT_RS33920 -2.8 -6.9 type II citrate synthase compare
BPHYT_RS04335 -2.8 -1.7 membrane protein compare
BPHYT_RS06685 -2.8 -1.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS15710 -2.8 -1.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17520 -2.8 -4.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12465 -2.7 -2.5 inositol monophosphatase compare
BPHYT_RS15620 -2.7 -2.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02525 -2.7 -6.4 membrane protein compare
BPHYT_RS09480 -2.7 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08850 -2.6 -1.4 transcriptional regulator compare
BPHYT_RS06610 -2.6 -1.0 triosephosphate isomerase compare
BPHYT_RS23445 -2.6 -1.5 hexuronate transporter compare
BPHYT_RS20235 -2.5 -4.1 iron ABC transporter compare
BPHYT_RS18320 -2.4 -7.2 orotate phosphoribosyltransferase compare
BPHYT_RS06375 -2.4 -4.3 ribonuclease compare
BPHYT_RS22940 -2.4 -1.4 pilus assembly protein TadE compare
BPHYT_RS16345 -2.4 -3.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS22360 -2.4 -2.5 response regulator receiver compare
BPHYT_RS07515 -2.4 -1.9 photosystem reaction center subunit H compare
BPHYT_RS04890 -2.3 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS32260 -2.3 -1.4 hypothetical protein compare
BPHYT_RS23265 -2.3 -4.4 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS11705 -2.3 -1.0 hypothetical protein compare
BPHYT_RS14485 -2.3 -3.8 ribonuclease E compare
BPHYT_RS03480 -2.3 -6.3 ferritin compare
BPHYT_RS16255 -2.3 -3.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS27160 -2.2 -1.5 hypothetical protein compare
BPHYT_RS20245 -2.2 -5.2 iron ABC transporter substrate-binding protein compare
BPHYT_RS04385 -2.2 -3.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS16245 -2.2 -4.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS15415 -2.2 -9.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS16815 -2.1 -1.6 ureidoglycolate hydrolase compare
BPHYT_RS34780 -2.1 -3.9 phytoene synthase compare
BPHYT_RS09330 -2.1 -10.2 phytoene synthase compare
BPHYT_RS14245 -2.1 -1.5 membrane protein compare
BPHYT_RS15075 -2.1 -1.4 dihydrokaempferol 4-reductase compare
BPHYT_RS01620 -2.0 -5.2 sensor histidine kinase compare
BPHYT_RS11930 -2.0 -2.1 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS03640 -2.0 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS22355 -2.0 -1.9 HAD family hydrolase compare
BPHYT_RS04370 -2.0 -1.0 glycosyl transferase compare
BPHYT_RS18265 -2.0 -2.3 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS06175 -2.0 -5.1 LPS biosynthesis compare
BPHYT_RS28470 -2.0 -1.2 hypothetical protein compare
BPHYT_RS14755 -2.0 -2.9 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS09515 -2.0 -3.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08245 -2.0 -6.0 anti-sigma factor compare
BPHYT_RS35720 -1.9 -5.1 phosphopantetheinyl transferase compare
BPHYT_RS06710 -1.9 -1.1 hypothetical protein compare
BPHYT_RS17530 -1.9 -3.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS13200 -1.9 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS13645 -1.9 -12.8 threonine--tRNA ligase compare
BPHYT_RS18250 -1.8 -5.9 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS02130 -1.8 -2.7 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS14195 -1.8 -1.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS10850 -1.8 -1.1 LysR family transcriptional regulator compare
BPHYT_RS02595 -1.8 -1.1 sulfurtransferase compare
BPHYT_RS14855 -1.8 -1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06985 -1.8 -6.6 fumarate hydratase compare
BPHYT_RS28485 -1.8 -0.9 GntR family transcriptional regulator compare
BPHYT_RS15320 -1.8 -1.7 hypothetical protein compare
BPHYT_RS19435 -1.8 -2.5 16S rRNA methyltransferase compare
BPHYT_RS25830 -1.7 -3.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS28535 -1.7 -0.9 response regulator receiver compare
BPHYT_RS09825 -1.7 -1.5 Fe-S protein compare
BPHYT_RS18705 -1.7 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS06550 -1.7 -1.5 acetolactate synthase compare
BPHYT_RS04885 -1.7 -1.7 threonine-phosphate decarboxylase compare
BPHYT_RS08235 -1.7 -0.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS21485 -1.7 -1.0 hypothetical protein compare
BPHYT_RS12725 -1.7 -10.5 regulator compare
BPHYT_RS33840 -1.7 -5.1 amidophosphoribosyltransferase compare
BPHYT_RS12615 -1.7 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS33690 -1.7 -1.6 molybdate ABC transporter permease compare
BPHYT_RS33645 -1.7 -5.9 homoserine kinase compare
BPHYT_RS33805 -1.6 -0.8 hypothetical protein compare
BPHYT_RS12280 -1.6 -1.1 RNA helicase compare
BPHYT_RS14490 -1.6 -8.7 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS09160 -1.6 -3.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS34430 -1.6 -1.0 2-keto-4-pentenoate hydratase compare
BPHYT_RS22455 -1.6 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS08975 -1.6 -3.3 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS05155 -1.6 -2.9 acetyltransferase GCN5 compare
BPHYT_RS33695 -1.5 -2.4 molybdenum ABC transporter ATPase compare
BPHYT_RS12990 -1.5 -1.8 iron transporter compare
BPHYT_RS26025 -1.5 -0.8 hypothetical protein compare
BPHYT_RS17760 -1.5 -5.3 ABC transporter permease compare
BPHYT_RS09620 -1.5 -2.0 aminodeoxychorismate lyase compare
BPHYT_RS16905 -1.5 -3.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS18260 -1.5 -4.4 phenylacetic acid degradation protein compare
BPHYT_RS14145 -1.5 -6.0 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS08125 -1.5 -6.5 ATPase compare
BPHYT_RS33150 -1.4 -0.7 beta-lactamase compare
BPHYT_RS33685 -1.4 -4.8 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS06530 -1.4 -1.1 membrane protein compare
BPHYT_RS36400 -1.4 -1.1 hypothetical protein compare
BPHYT_RS06075 -1.4 -3.4 hypothetical protein compare
BPHYT_RS35885 -1.4 -3.9 hypothetical protein compare
BPHYT_RS06600 -1.4 -1.4 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS12590 -1.4 -1.5 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS14865 -1.3 -1.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS11540 -1.3 -1.6 ureidoglycolate hydrolase compare
BPHYT_RS03570 -1.3 -4.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS00770 -1.3 -0.7 conjugal transfer protein TraC compare
BPHYT_RS26310 -1.3 -1.3 ribonuclease R compare
BPHYT_RS04895 -1.3 -2.8 adenosylcobinamide kinase compare
BPHYT_RS01660 -1.3 -2.0 hypothetical protein compare
BPHYT_RS16840 -1.3 -1.7 transketolase compare
BPHYT_RS12840 -1.3 -2.0 pyruvate dehydrogenase compare
BPHYT_RS16880 -1.3 -1.1 malic enzyme compare
BPHYT_RS36360 -1.3 -1.3 hypothetical protein compare
BPHYT_RS15290 -1.3 -1.5 tRNA-Arg compare
BPHYT_RS06990 -1.3 -1.0 membrane protein compare
BPHYT_RS18340 -1.3 -1.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS13000 -1.3 -2.6 phosphodiesterase compare
BPHYT_RS16175 -1.3 -1.4 hemolysin D compare
BPHYT_RS27065 -1.3 -1.0 hypothetical protein compare
BPHYT_RS03400 -1.3 -0.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS02435 -1.3 -1.0 hypothetical protein compare
BPHYT_RS33515 -1.2 -4.8 porin compare
BPHYT_RS13815 -1.2 -1.8 hypothetical protein compare
BPHYT_RS18655 -1.2 -3.1 3-oxoacyl-ACP synthase compare
BPHYT_RS13385 -1.2 -2.6 hypothetical protein compare
BPHYT_RS00115 -1.2 -1.3 acetaldehyde dehydrogenase compare
BPHYT_RS01940 -1.2 -4.7 16S rRNA methyltransferase compare
BPHYT_RS09850 -1.2 -1.3 molybdopterin oxidoreductase compare
BPHYT_RS24965 -1.2 -1.1 hypothetical protein compare
BPHYT_RS33535 -1.2 -8.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS34490 -1.2 -0.7 hypothetical protein compare
BPHYT_RS01240 -1.2 -1.5 hypothetical protein compare
BPHYT_RS16320 -1.2 -2.1 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS20715 -1.2 -1.2 peptidase compare
BPHYT_RS04285 -1.2 -0.8 rhamnosyltransferase compare
BPHYT_RS09000 -1.2 -0.8 competence protein ComE compare
BPHYT_RS29485 -1.2 -1.2 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS08965 -1.2 -3.1 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS21025 -1.2 -0.8 cation-binding protein compare
BPHYT_RS15950 -1.2 -3.3 tyrosine recombinase XerD compare
BPHYT_RS11565 -1.2 -1.7 nitrate reductase compare
BPHYT_RS32475 -1.2 -1.0 dihydroxyacetone kinase compare
BPHYT_RS30995 -1.2 -0.7 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS30020 -1.2 -2.6 arsenic transporter compare
BPHYT_RS23570 -1.2 -2.8 chemotaxis protein CheY compare
BPHYT_RS30150 -1.2 -2.5 methylcitrate synthase compare
BPHYT_RS15920 -1.2 -5.4 argininosuccinate synthase compare
BPHYT_RS03645 -1.2 -1.2 tRNA dimethylallyltransferase compare
BPHYT_RS27800 -1.2 -1.7 esterase compare
BPHYT_RS04015 -1.2 -1.3 glycosyl transferase compare
BPHYT_RS01630 -1.1 -1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS06775 -1.1 -2.7 nucleotide-binding protein compare
BPHYT_RS04695 -1.1 -3.5 ABC transporter substrate-binding protein compare
BPHYT_RS14140 -1.1 -1.6 phosphate transporter permease subunit PstC compare
BPHYT_RS02975 -1.1 -1.2 membrane protein compare
BPHYT_RS13885 -1.1 -1.0 myo-inositol 2-dehydrogenase compare
BPHYT_RS26080 -1.1 -0.8 ABC transporter ATPase compare
BPHYT_RS06790 -1.1 -5.2 hypothetical protein compare
BPHYT_RS25080 -1.1 -1.1 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS12520 -1.1 -2.0 nicotinate phosphoribosyltransferase compare
BPHYT_RS35205 -1.1 -1.1 hypothetical protein compare
BPHYT_RS20240 -1.1 -2.1 iron reductase compare
BPHYT_RS24105 -1.1 -1.5 chloroperoxidase compare
BPHYT_RS27580 -1.1 -1.1 F0F1 ATP synthase subunit alpha compare
BPHYT_RS36090 -1.1 -0.9 hypothetical protein compare
BPHYT_RS04955 -1.1 -1.2 methionyl-tRNA synthetase compare
BPHYT_RS28875 -1.1 -2.7 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase compare
BPHYT_RS12150 -1.1 -5.8 PII uridylyl-transferase compare
BPHYT_RS24210 -1.1 -2.2 urea transporter compare
BPHYT_RS10320 -1.1 -2.5 hypothetical protein compare
BPHYT_RS06155 -1.1 -4.3 DEAD/DEAH box helicase compare
BPHYT_RS05625 -1.1 -2.6 hypothetical protein compare
BPHYT_RS36185 -1.1 -2.2 hypothetical protein compare
BPHYT_RS16740 -1.1 -3.9 transcriptional regulator compare
BPHYT_RS09345 -1.1 -2.0 TetR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment