Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1.2 mL volume, Aerobic, at 30 (C), shaken=1200 rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| L-tyrosine degradation I | 5 | 5 | 5 |
| formate oxidation to CO2 | 1 | 1 | 1 |
| anthranilate degradation I (aerobic) | 1 | 1 | 1 |
| 3-(4-hydroxyphenyl)pyruvate biosynthesis | 1 | 1 | 1 |
| acetaldehyde biosynthesis I | 1 | 1 | 1 |
| L-aspartate degradation I | 1 | 1 | 1 |
| L-aspartate biosynthesis | 1 | 1 | 1 |
| ethanol degradation II | 3 | 3 | 2 |
| ketolysis | 3 | 3 | 2 |
| L-phenylalanine degradation II (anaerobic) | 3 | 2 | 2 |
| phenylethylamine degradation I | 2 | 2 | 1 |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 2 | 2 | 1 |
| 3-dehydroquinate biosynthesis I | 2 | 2 | 1 |
| L-glutamate degradation II | 2 | 2 | 1 |
| putrescine degradation V | 2 | 2 | 1 |
| phytol degradation | 4 | 3 | 2 |
| L-tyrosine degradation III | 4 | 2 | 2 |
| L-phenylalanine degradation III | 4 | 2 | 2 |
| putrescine degradation I | 2 | 1 | 1 |
| atromentin biosynthesis | 2 | 1 | 1 |
| acetoacetate degradation (to acetyl CoA) | 2 | 1 | 1 |
| L-tyrosine degradation II | 2 | 1 | 1 |
| phenylethylamine degradation II | 2 | 1 | 1 |
| phenylethanol degradation | 2 | 1 | 1 |
| ethanol degradation I | 2 | 1 | 1 |
| ethylene glycol degradation | 2 | 1 | 1 |
| pyruvate fermentation to ethanol II | 2 | 1 | 1 |
| pseudouridine degradation | 2 | 1 | 1 |
| L-tryptophan degradation IV (via indole-3-lactate) | 2 | 1 | 1 |
| malate/L-aspartate shuttle pathway | 2 | 1 | 1 |
| 5,6-dehydrokavain biosynthesis (engineered) | 10 | 6 | 4 |
| superpathway of plastoquinol biosynthesis | 5 | 2 | 2 |
| L-phenylalanine biosynthesis I | 3 | 3 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| L-tyrosine biosynthesis I | 3 | 3 | 1 |
| benzoyl-CoA biosynthesis | 3 | 3 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| hypotaurine degradation | 3 | 2 | 1 |
| L-leucine degradation III | 3 | 2 | 1 |
| putrescine degradation IV | 3 | 2 | 1 |
| L-valine degradation II | 3 | 2 | 1 |
| L-isoleucine degradation II | 3 | 2 | 1 |
| ethanol degradation III | 3 | 2 | 1 |
| polyhydroxybutanoate biosynthesis | 3 | 2 | 1 |
| L-phenylalanine degradation IV (mammalian, via side chain) | 9 | 5 | 3 |
| L-methionine degradation III | 3 | 1 | 1 |
| indole-3-acetate biosynthesis VI (bacteria) | 3 | 1 | 1 |
| styrene degradation | 3 | 1 | 1 |
| sulfolactate degradation III | 3 | 1 | 1 |
| histamine degradation | 3 | 1 | 1 |
| L-tyrosine degradation IV (to 4-methylphenol) | 3 | 1 | 1 |
| 2-nitrobenzoate degradation II | 3 | 1 | 1 |
| pyruvate fermentation to ethanol I | 3 | 1 | 1 |
| pyruvate fermentation to ethanol III | 3 | 1 | 1 |
| (R)-cysteate degradation | 3 | 1 | 1 |
| plastoquinol-9 biosynthesis I | 3 | 1 | 1 |
| noradrenaline and adrenaline degradation | 13 | 8 | 4 |
| serotonin degradation | 7 | 4 | 2 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 3 | 1 |
| putrescine degradation III | 4 | 3 | 1 |
| D-arabinose degradation II | 4 | 2 | 1 |
| salidroside biosynthesis | 4 | 2 | 1 |
| L-tryptophan degradation X (mammalian, via tryptamine) | 4 | 2 | 1 |
| fatty acid α-oxidation I (plants) | 4 | 2 | 1 |
| oxalate degradation VI | 4 | 1 | 1 |
| (2S)-ethylmalonyl-CoA biosynthesis | 4 | 1 | 1 |
| 4-hydroxy-2-nonenal detoxification | 4 | 1 | 1 |
| cytidine-5'-diphosphate-glycerol biosynthesis | 4 | 1 | 1 |
| L-tryptophan degradation VIII (to tryptophol) | 4 | 1 | 1 |
| oleate β-oxidation | 35 | 33 | 8 |
| valproate β-oxidation | 9 | 6 | 2 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 11 | 3 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 2 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 2 |
| octane oxidation | 5 | 4 | 1 |
| (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered) | 5 | 4 | 1 |
| pyruvate fermentation to isobutanol (engineered) | 5 | 4 | 1 |
| mitochondrial NADPH production (yeast) | 5 | 4 | 1 |
| ethanolamine utilization | 5 | 4 | 1 |
| 4-hydroxybenzoate biosynthesis III (plants) | 5 | 4 | 1 |
| fatty acid β-oxidation II (plant peroxisome) | 5 | 4 | 1 |
| acetylene degradation (anaerobic) | 5 | 3 | 1 |
| glutaryl-CoA degradation | 5 | 3 | 1 |
| ketogenesis | 5 | 3 | 1 |
| trans-4-hydroxy-L-proline degradation I | 5 | 3 | 1 |
| fatty acid β-oxidation VII (yeast peroxisome) | 5 | 3 | 1 |
| 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast) | 10 | 5 | 2 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| (S)-propane-1,2-diol degradation | 5 | 2 | 1 |
| dopamine degradation | 5 | 2 | 1 |
| phenylethanol biosynthesis | 5 | 2 | 1 |
| pentachlorophenol degradation | 10 | 3 | 2 |
| L-phenylalanine degradation VI (reductive Stickland reaction) | 5 | 1 | 1 |
| pyruvate fermentation to acetone | 5 | 1 | 1 |
| L-tryptophan degradation XIII (reductive Stickland reaction) | 5 | 1 | 1 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 5 | 1 | 1 |
| isopropanol biosynthesis (engineered) | 5 | 1 | 1 |
| L-tyrosine degradation V (reductive Stickland reaction) | 5 | 1 | 1 |
| ethylbenzene degradation (anaerobic) | 5 | 1 | 1 |
| oxalate degradation III | 5 | 1 | 1 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 2 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 6 | 2 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 3 |
| superpathway of L-threonine biosynthesis | 6 | 6 | 1 |
| fatty acid salvage | 6 | 6 | 1 |
| TCA cycle VIII (Chlamydia) | 6 | 5 | 1 |
| L-isoleucine degradation I | 6 | 4 | 1 |
| pyruvate fermentation to butanol II (engineered) | 6 | 4 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 1 |
| propanoate fermentation to 2-methylbutanoate | 6 | 3 | 1 |
| 4-ethylphenol degradation (anaerobic) | 6 | 2 | 1 |
| superpathway of sulfolactate degradation | 6 | 2 | 1 |
| 10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast) | 6 | 1 | 1 |
| coenzyme M biosynthesis II | 6 | 1 | 1 |
| alkane oxidation | 6 | 1 | 1 |
| jasmonic acid biosynthesis | 19 | 7 | 3 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 5 | 2 |
| chorismate biosynthesis I | 7 | 7 | 1 |
| fatty acid β-oxidation I (generic) | 7 | 6 | 1 |
| 3-methylbutanol biosynthesis (engineered) | 7 | 6 | 1 |
| fatty acid β-oxidation VI (mammalian peroxisome) | 7 | 5 | 1 |
| superpathway of glycol metabolism and degradation | 7 | 5 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 9 | 2 |
| anaerobic energy metabolism (invertebrates, cytosol) | 7 | 4 | 1 |
| acetyl-CoA fermentation to butanoate | 7 | 3 | 1 |
| pyruvate fermentation to butanoate | 7 | 3 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| mevalonate pathway I (eukaryotes and bacteria) | 7 | 1 | 1 |
| vitamin E biosynthesis (tocopherols) | 7 | 1 | 1 |
| mevalonate pathway II (haloarchaea) | 7 | 1 | 1 |
| limonene degradation IV (anaerobic) | 7 | 1 | 1 |
| superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) | 8 | 7 | 1 |
| 2-deoxy-D-ribose degradation II | 8 | 7 | 1 |
| superpathway of ornithine degradation | 8 | 4 | 1 |
| pyruvate fermentation to butanol I | 8 | 4 | 1 |
| aromatic biogenic amine degradation (bacteria) | 8 | 4 | 1 |
| glutathione-mediated detoxification I | 8 | 3 | 1 |
| butanol and isobutanol biosynthesis (engineered) | 8 | 3 | 1 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| 2-methylpropene degradation | 8 | 2 | 1 |
| isoprene biosynthesis II (engineered) | 8 | 1 | 1 |
| mevalonate pathway III (Thermoplasma) | 8 | 1 | 1 |
| mevalonate pathway IV (archaea) | 8 | 1 | 1 |
| androstenedione degradation I (aerobic) | 25 | 6 | 3 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 7 | 2 |
| TCA cycle VI (Helicobacter) | 9 | 7 | 1 |
| superpathway of L-methionine biosynthesis (transsulfuration) | 9 | 7 | 1 |
| Entner-Doudoroff pathway II (non-phosphorylative) | 9 | 6 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 5 | 1 |
| superpathway of fermentation (Chlamydomonas reinhardtii) | 9 | 4 | 1 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 9 | 3 | 1 |
| gliotoxin biosynthesis | 9 | 2 | 1 |
| 4-oxopentanoate degradation | 9 | 1 | 1 |
| glutathione-mediated detoxification II | 9 | 1 | 1 |
| superpathway of testosterone and androsterone degradation | 28 | 7 | 3 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 6 | 1 |
| 3-phenylpropanoate degradation | 10 | 5 | 1 |
| superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | 10 | 4 | 1 |
| methyl tert-butyl ether degradation | 10 | 4 | 1 |
| L-lysine fermentation to acetate and butanoate | 10 | 3 | 1 |
| rosmarinic acid biosynthesis I | 10 | 1 | 1 |
| superpathway of cholesterol degradation I (cholesterol oxidase) | 42 | 8 | 4 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 7 | 1 |
| (8E,10E)-dodeca-8,10-dienol biosynthesis | 11 | 6 | 1 |
| superpathway of phenylethylamine degradation | 11 | 6 | 1 |
| ethylmalonyl-CoA pathway | 11 | 1 | 1 |
| (S)-reticuline biosynthesis I | 11 | 1 | 1 |
| tropane alkaloids biosynthesis | 11 | 1 | 1 |
| superpathway of cholesterol degradation II (cholesterol dehydrogenase) | 47 | 9 | 4 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 12 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 5 | 1 |
| indole-3-acetate biosynthesis II | 12 | 5 | 1 |
| 10-cis-heptadecenoyl-CoA degradation (yeast) | 12 | 4 | 1 |
| 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast) | 12 | 4 | 1 |
| L-glutamate degradation VII (to butanoate) | 12 | 3 | 1 |
| indole glucosinolate activation (intact plant cell) | 12 | 3 | 1 |
| camalexin biosynthesis | 12 | 2 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 9 | 1 |
| (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | 13 | 3 | 1 |
| L-tryptophan degradation V (side chain pathway) | 13 | 1 | 1 |
| androstenedione degradation II (anaerobic) | 27 | 4 | 2 |
| anaerobic aromatic compound degradation (Thauera aromatica) | 27 | 4 | 2 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 12 | 1 |
| docosahexaenoate biosynthesis III (6-desaturase, mammals) | 14 | 3 | 1 |
| superpathway of rosmarinic acid biosynthesis | 14 | 1 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| L-tryptophan degradation III (eukaryotic) | 15 | 6 | 1 |
| mixed acid fermentation | 16 | 11 | 1 |
| glycerol degradation to butanol | 16 | 10 | 1 |
| superpathway of hyoscyamine (atropine) and scopolamine biosynthesis | 16 | 4 | 1 |
| crotonate fermentation (to acetate and cyclohexane carboxylate) | 16 | 4 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 8 | 1 |
| benzoate fermentation (to acetate and cyclohexane carboxylate) | 17 | 4 | 1 |
| cholesterol degradation to androstenedione I (cholesterol oxidase) | 17 | 2 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| heterolactic fermentation | 18 | 13 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 8 | 1 |
| toluene degradation VI (anaerobic) | 18 | 4 | 1 |
| sitosterol degradation to androstenedione | 18 | 1 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 14 | 1 |
| hexitol fermentation to lactate, formate, ethanol and acetate | 19 | 13 | 1 |
| superpathway of chorismate metabolism | 59 | 42 | 3 |
| superpathway of N-acetylneuraminate degradation | 22 | 14 | 1 |
| cholesterol degradation to androstenedione II (cholesterol dehydrogenase) | 22 | 3 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 1 |
| superpathway of cholesterol degradation III (oxidase) | 49 | 5 | 2 |
| aspartate superpathway | 25 | 22 | 1 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 19 | 1 |
| platensimycin biosynthesis | 26 | 6 | 1 |
| superpathway of ergosterol biosynthesis I | 26 | 3 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 19 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 20 | 2 |
| superpathway of aromatic compound degradation via 3-oxoadipate | 35 | 19 | 1 |
| superpathway of cholesterol biosynthesis | 38 | 3 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 16 | 1 |
| superpathway of aromatic compound degradation via 2-hydroxypentadienoate | 42 | 13 | 1 |
| superpathway of L-lysine degradation | 43 | 17 | 1 |