Experiment set21IT032 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17620 -5.2 -11.2 cytochrome C compare
BPHYT_RS15620 -4.6 -3.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS28485 -4.5 -1.2 GntR family transcriptional regulator compare
BPHYT_RS16270 -4.2 -3.5 phosphoglycerate kinase compare
BPHYT_RS14855 -4.1 -1.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33920 -4.1 -6.2 type II citrate synthase compare
BPHYT_RS13605 -4.1 -1.0 tRNA-Pro compare
BPHYT_RS33765 -4.0 -1.0 membrane protein compare
BPHYT_RS24095 -4.0 -4.3 membrane protein compare
BPHYT_RS04965 -4.0 -8.1 ATP-binding protein compare
BPHYT_RS17630 -3.9 -7.9 ubiquinol-cytochrome C reductase compare
BPHYT_RS17625 -3.7 -13.5 cytochrome B compare
BPHYT_RS17955 -3.5 -6.7 cytochrome C compare
BPHYT_RS02860 -3.5 -0.9 membrane protein compare
BPHYT_RS16835 -3.4 -5.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06405 -3.3 -5.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS20245 -3.2 -5.8 iron ABC transporter substrate-binding protein compare
BPHYT_RS12845 -3.1 -11.7 ATPase compare
BPHYT_RS17095 -3.0 -2.6 proline--tRNA ligase compare
BPHYT_RS26840 -3.0 -4.6 NADH dehydrogenase compare
BPHYT_RS12055 -2.8 -13.8 phosphoenolpyruvate synthase compare
BPHYT_RS20235 -2.8 -7.2 iron ABC transporter compare
BPHYT_RS06685 -2.8 -1.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS03480 -2.7 -9.2 ferritin compare
BPHYT_RS02590 -2.7 -6.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS01455 -2.7 -1.0 peptide deformylase compare
BPHYT_RS16255 -2.6 -2.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS08850 -2.6 -1.3 transcriptional regulator compare
BPHYT_RS03640 -2.6 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02525 -2.6 -7.0 membrane protein compare
BPHYT_RS03725 -2.5 -1.1 serine hydroxymethyltransferase compare
BPHYT_RS08975 -2.5 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS17520 -2.5 -4.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06530 -2.5 -1.5 membrane protein compare
BPHYT_RS17945 -2.5 -1.9 cytochrome C biogenesis protein compare
BPHYT_RS26855 -2.4 -2.8 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS12990 -2.4 -2.1 iron transporter compare
BPHYT_RS08960 -2.4 -1.4 threonine synthase compare
BPHYT_RS09515 -2.4 -2.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16710 -2.4 -0.8 LysR family transcriptional regulator compare
BPHYT_RS33580 -2.4 -4.3 geranyltranstransferase compare
BPHYT_RS16340 -2.4 -5.1 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS04890 -2.4 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS35720 -2.3 -5.7 phosphopantetheinyl transferase compare
BPHYT_RS01620 -2.3 -4.1 sensor histidine kinase compare
BPHYT_RS12465 -2.3 -2.0 inositol monophosphatase compare
BPHYT_RS16840 -2.3 -1.6 transketolase compare
BPHYT_RS30750 -2.3 -1.5 GntR family transcriptional regulator compare
BPHYT_RS30055 -2.3 -2.3 hypothetical protein compare
BPHYT_RS29855 -2.3 -1.0 protein-tyrosine-phosphatase compare
BPHYT_RS08965 -2.2 -3.6 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS33805 -2.2 -1.0 hypothetical protein compare
BPHYT_RS33655 -2.2 -4.6 MarR family transcriptional regulator compare
BPHYT_RS02975 -2.2 -2.4 membrane protein compare
BPHYT_RS15415 -2.2 -8.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06600 -2.1 -1.7 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS14190 -2.1 -6.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16245 -2.1 -2.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS03645 -2.1 -1.7 tRNA dimethylallyltransferase compare
BPHYT_RS06985 -2.1 -5.4 fumarate hydratase compare
BPHYT_RS11705 -2.0 -1.1 hypothetical protein compare
BPHYT_RS03400 -2.0 -0.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS34780 -2.0 -4.0 phytoene synthase compare
BPHYT_RS15710 -2.0 -1.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS33840 -2.0 -5.0 amidophosphoribosyltransferase compare
BPHYT_RS08340 -2.0 -0.5 chemotaxis protein CheY compare
BPHYT_RS23875 -1.9 -0.8 sugar ABC transporter ATP-binding protein compare
BPHYT_RS23265 -1.9 -4.2 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS19325 -1.9 -2.0 glycine cleavage system H protein compare
BPHYT_RS04895 -1.9 -3.0 adenosylcobinamide kinase compare
BPHYT_RS16905 -1.9 -4.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS02865 -1.9 -1.8 hypothetical protein compare
BPHYT_RS33690 -1.9 -1.4 molybdate ABC transporter permease compare
BPHYT_RS18255 -1.9 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS13645 -1.9 -11.3 threonine--tRNA ligase compare
BPHYT_RS08765 -1.9 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS26300 -1.9 -1.4 ATP-dependent DNA ligase compare
BPHYT_RS30465 -1.9 -1.1 short-chain dehydrogenase compare
BPHYT_RS06610 -1.9 -0.9 triosephosphate isomerase compare
BPHYT_RS14195 -1.8 -1.8 carbamoyl phosphate synthase small subunit compare
BPHYT_RS33630 -1.8 -1.8 chromate transporter compare
BPHYT_RS18265 -1.8 -2.8 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS04955 -1.8 -1.6 methionyl-tRNA synthetase compare
BPHYT_RS03090 -1.8 -1.6 hypothetical protein compare
BPHYT_RS07050 -1.8 -1.3 membrane protein compare
BPHYT_RS05655 -1.8 -2.4 membrane protein compare
BPHYT_RS28595 -1.8 -1.1 glyoxalase compare
BPHYT_RS20180 -1.8 -2.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS26820 -1.8 -1.6 LysR family transcriptional regulator compare
BPHYT_RS17075 -1.7 -2.3 ABC transporter permease compare
BPHYT_RS06075 -1.7 -5.2 hypothetical protein compare
BPHYT_RS06350 -1.7 -1.8 chemotaxis protein CheY compare
BPHYT_RS09480 -1.7 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06325 -1.7 -5.2 ATPase compare
BPHYT_RS16345 -1.7 -2.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS12725 -1.7 -10.8 regulator compare
BPHYT_RS02365 -1.7 -1.1 hypothetical protein compare
BPHYT_RS18660 -1.7 -2.4 hypothetical protein compare
BPHYT_RS14140 -1.7 -2.8 phosphate transporter permease subunit PstC compare
BPHYT_RS26595 -1.7 -2.5 carbonic anhydrase compare
BPHYT_RS10355 -1.7 -1.7 nitrate reductase compare
BPHYT_RS06975 -1.7 -1.6 glutamate racemase compare
BPHYT_RS19985 -1.7 -0.8 CoA-transferase compare
BPHYT_RS04370 -1.7 -0.9 glycosyl transferase compare
BPHYT_RS28575 -1.7 -0.9 transcriptional regulator compare
BPHYT_RS33645 -1.6 -5.4 homoserine kinase compare
BPHYT_RS28365 -1.6 -1.2 Germin subfamily 1 member 15 compare
BPHYT_RS03280 -1.6 -1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS02610 -1.6 -3.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS05155 -1.6 -3.8 acetyltransferase GCN5 compare
BPHYT_RS28470 -1.6 -1.0 hypothetical protein compare
BPHYT_RS31400 -1.6 -0.9 methyl-accepting chemotaxis protein compare
BPHYT_RS33150 -1.6 -0.8 beta-lactamase compare
BPHYT_RS09330 -1.6 -7.4 phytoene synthase compare
BPHYT_RS10830 -1.6 -1.4 carbon monoxide dehydrogenase compare
BPHYT_RS22295 -1.5 -1.0 LysR family transcriptional regulator compare
BPHYT_RS16320 -1.5 -2.7 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS03570 -1.5 -4.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS18270 -1.5 -5.2 phenylacetic acid degradation protein compare
BPHYT_RS09825 -1.5 -1.3 Fe-S protein compare
BPHYT_RS14715 -1.5 -5.8 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS14755 -1.5 -2.4 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS00115 -1.5 -1.3 acetaldehyde dehydrogenase compare
BPHYT_RS23275 -1.5 -2.1 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS23520 -1.5 -1.6 peroxidase compare
BPHYT_RS33515 -1.5 -6.7 porin compare
BPHYT_RS36150 -1.4 -1.8 hypothetical protein compare
BPHYT_RS10945 -1.4 -1.2 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS11235 -1.4 -0.7 hypothetical protein compare
BPHYT_RS34745 -1.4 -1.0 hypothetical protein compare
BPHYT_RS09385 -1.4 -0.8 FAD-dependent oxidoreductase compare
BPHYT_RS20155 -1.4 -0.9 hypothetical protein compare
BPHYT_RS25870 -1.4 -0.7 type III secretion system ATPase compare
BPHYT_RS16470 -1.4 -3.0 DeoR faimly transcriptional regulator compare
BPHYT_RS14670 -1.4 -1.0 hypothetical protein compare
BPHYT_RS14865 -1.4 -1.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04455 -1.4 -0.9 glycosyl transferase compare
BPHYT_RS27295 -1.4 -1.3 hypothetical protein compare
BPHYT_RS15290 -1.4 -1.7 tRNA-Arg compare
BPHYT_RS34655 -1.4 -1.3 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS11745 -1.4 -1.0 (2Fe-2S)-binding protein compare
BPHYT_RS21685 -1.3 -2.0 cobalamin biosynthesis protein CobS compare
BPHYT_RS32260 -1.3 -1.3 hypothetical protein compare
BPHYT_RS30610 -1.3 -1.7 major facilitator transporter compare
BPHYT_RS18250 -1.3 -4.1 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS34240 -1.3 -2.4 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS35885 -1.3 -3.1 hypothetical protein compare
BPHYT_RS11825 -1.3 -0.9 cytosine deaminase compare
BPHYT_RS16175 -1.3 -1.2 hemolysin D compare
BPHYT_RS08125 -1.3 -6.1 ATPase compare
BPHYT_RS11285 -1.3 -1.9 LacI family transcription regulator compare
BPHYT_RS32860 -1.3 -0.8 hypothetical protein compare
BPHYT_RS08235 -1.3 -0.6 nucleoprotein, Hfg, host factor I compare
BPHYT_RS06375 -1.3 -2.5 ribonuclease compare
BPHYT_RS14485 -1.3 -2.1 ribonuclease E compare
BPHYT_RS08410 -1.3 -0.8 dehydrogenase compare
BPHYT_RS17530 -1.3 -2.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04220 -1.3 -2.8 hypothetical protein compare
BPHYT_RS12840 -1.2 -2.4 pyruvate dehydrogenase compare
BPHYT_RS09765 -1.2 -1.6 G-D-S-L family lipolytic protein compare
BPHYT_RS23525 -1.2 -0.9 hypothetical protein compare
BPHYT_RS21485 -1.2 -0.8 hypothetical protein compare
BPHYT_RS33060 -1.2 -1.0 hypothetical protein compare
BPHYT_RS31260 -1.2 -1.1 histidine kinase compare
BPHYT_RS33535 -1.2 -8.5 RNA polymerase sigma factor RpoD compare
BPHYT_RS05905 -1.2 -0.7 hypothetical protein compare
BPHYT_RS30065 -1.2 -1.4 shikimate dehydrogenase compare
BPHYT_RS11125 -1.2 -0.9 alkylhydroperoxidase compare
BPHYT_RS09620 -1.2 -1.4 aminodeoxychorismate lyase compare
BPHYT_RS15045 -1.2 -4.1 peptidase C26 compare
BPHYT_RS33685 -1.2 -4.2 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS09690 -1.2 -0.9 phosphate starvation-inducible protein PsiF compare
BPHYT_RS32985 -1.2 -2.5 hypothetical protein compare
BPHYT_RS18260 -1.2 -4.7 phenylacetic acid degradation protein compare
BPHYT_RS07660 -1.2 -1.5 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS33695 -1.2 -2.8 molybdenum ABC transporter ATPase compare
BPHYT_RS01530 -1.2 -1.7 penicillin-binding protein 2 compare
BPHYT_RS24565 -1.2 -1.8 membrane protein compare
BPHYT_RS26555 -1.2 -2.4 multidrug MFS transporter compare
BPHYT_RS23350 -1.2 -1.3 NAD-dependent epimerase/dehydratase compare
BPHYT_RS04255 -1.2 -1.4 diadenosine tetraphosphatase compare
BPHYT_RS16215 -1.2 -1.8 sensor histidine kinase compare
BPHYT_RS25575 -1.2 -0.8 alpha/beta hydrolase compare
BPHYT_RS25270 -1.2 -1.8 multidrug MFS transporter compare
BPHYT_RS10120 -1.1 -2.2 membrane protein compare
BPHYT_RS21715 -1.1 -1.3 taurine ABC transporter permease compare
BPHYT_RS36365 -1.1 -1.5 hypothetical protein compare
BPHYT_RS18630 -1.1 -2.4 allophanate hydrolase compare
BPHYT_RS13460 -1.1 -2.1 chemotaxis protein compare
BPHYT_RS05355 -1.1 -1.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS24630 -1.1 -1.1 (2Fe-2S)-binding protein compare
BPHYT_RS33950 -1.1 -5.5 GntR family transcriptional regulator compare
BPHYT_RS33885 -1.1 -6.8 tRNA pseudouridine synthase A compare
BPHYT_RS32335 -1.1 -1.5 AsnC family transcriptional regulator compare
BPHYT_RS14145 -1.1 -5.2 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS12150 -1.1 -5.5 PII uridylyl-transferase compare
BPHYT_RS28660 -1.1 -0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS14495 -1.1 -3.9 molybdopterin-guanine dinucleotide biosynthesis protein A compare
BPHYT_RS04335 -1.1 -1.0 membrane protein compare
BPHYT_RS10320 -1.1 -3.2 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment